BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23480.2
Length=1577
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905398 jgi|Araly1|905398|Al_scaffold_0003_2526 883 0.0
Ahg930378 jgi|Araly1|930378|scaffold_302835.1 852 0.0
Ahg359447 jgi|Araly1|359447|fgenesh1_pg.C_scaffold_242000003 582 2e-165
> Ahg905398 jgi|Araly1|905398|Al_scaffold_0003_2526
Length=1026
Score = 883 bits (478), Expect = 0.0
Identities = 664/752 (88%), Gaps = 19/752 (3%)
Strand=Plus/Plus
Query 606 TTAAAAACTTC-CAGAATGAGAAAAATACATCTTTTAATCGAAAAGGCGAGGATAAAGAA 664
||||| ||| | || ||||||||||||| ||||| | || || ||| |||||||| ||||
Sbjct 280 TTAAAGACTGCACA-AATGAGAAAAATATATCTTCTCATTGATAAGTCGAGGATAGAGAA 338
Query 665 GAACCATATGAGGTTTTAGAGATAGGATGCGGATGGGGAACTTTAGCCATAGAAGTTGTG 724
||||| ||||||| ||||| || |||||||||||||||||||| |||||||||| ||||
Sbjct 339 GAACC--ATGAGGTCTTAGATATTGGATGCGGATGGGGAACTTTGGCCATAGAAGCTGTG 396
Query 725 AAAAGAACTGGATGCAAATACACTGGCT-TTACTCTATCTATTGAACAACTTAAATATGT 783
| |||||||||||||||||| || || | |||| ||||| |||||||||||||| ||||
Sbjct 397 AGAAGAACTGGATGCAAATATACCGG-TATTACGCTATCAATTGAACAACTTAAGTATGC 455
Query 784 AGAAGAGAAAGTTAAAGAAGCTGGACTTCAGGAGCGGATTACGTTTAAGCTCTGCGATTA 843
|||||| ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 456 AGAAGAAAAAGTGAAACAAGCTGGACTTCAGGACCGGATTACGTTTAAGCTCTGCGATTA 515
Query 844 TCGCCAACTATGTGATACTCAAAAATATGACAGAATTATATCTTGTGAGATGATAGAACA 903
||||||||||| |||| |||||||||||||||||||||||||||| |||| | |||||||
Sbjct 516 TCGCCAACTATCTGATGCTCAAAAATATGACAGAATTATATCTTGCGAGAGGCTAGAACA 575
Query 904 TGTTGGCCACAAATTCATGGAGACATTTTTCAGTCACTGTGAAGCTGCGCTTGCAGAAGA 963
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 576 TGTTGGCCACAAATTCATGGAGACATTTTTCAGTCACTGTGAAGCTGCGCTTGCGGAAGA 635
Query 964 CGGCATTTTTGTCCTCCAGTTCACAGCAATACCTGAGGAGCTTTACGACGAG-AGCAGAC 1022
||||||||||||| | | ||| | | | ||||| || || | |||| | ||| | |||||
Sbjct 636 CGGCATTTTTGTCTTGCTGTTTATATCGATACCCGAAGAACGTTACAATGAGTA-CAGAC 694
Query 1023 TAACTTCAGGTTTCATAACGGAATACATATTCCCTGGTGGATGTCTTCCTTCTTTAGCCA 1082
||| ||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct 695 TAAATTCAGATTTCATAAAAGAATACATATTCCCAGGTGGATGCCTTCCTTCTTTAGCCA 754
Query 1083 GAGTTACTTCAGCCATGGCCTCTTCCTCTAGGCTATGCATTGAAAACGTTGAGAACATTG 1142
||||||||||||||||| ||||||| |||||||||||||||||| | |||||||||||||
Sbjct 755 GAGTTACTTCAGCCATGTCCTCTTCTTCTAGGCTATGCATTGAACATGTTGAGAACATTG 814
Query 1143 GGATTCATTACTATCCTA-CGTTGAGATACTGGAGGAAGAACTTATTGGAGAGACAAAAA 1201
||||||||||||| || | || |||||| ||||||||||| || |||||||||||||||
Sbjct 815 GGATTCATTACTA-CCAAACGCTGAGATTGTGGAGGAAGAATTTCTTGGAGAGACAAAAA 873
Query 1202 CAAATCATTGATCTTGGATTCGACGAGAAATTC-TTAAGGACATGGGAATATTATTTCGA 1260
|||||||| ||||||||||||||||| |||||| ||| ||| ||||||||||||||||||
Sbjct 874 CAAATCATCGATCTTGGATTCGACGATAAATTCATTA-GGATATGGGAATATTATTTCGA 932
Query 1261 CTACTGTGCAGCTGGGTTCAAGACTCTTACCCTTAGA------A-ACTACCAGATAGTTT 1313
||| ||||||||||| |||||||||||||||||| | | ||||||||||| |||
Sbjct 933 CTATTGTGCAGCTGGTTTCAAGACTCTTACCCTTGGTCCTTGGAGACTACCAGATATTTT 992
Query 1314 TCTCACGTCCAGGGAACGTAGCTGCATTCGGT 1345
||||||||||||||||||||| ||||||||||
Sbjct 993 TCTCACGTCCAGGGAACGTAGTTGCATTCGGT 1024
> Ahg930378 jgi|Araly1|930378|scaffold_302835.1
Length=2648
Score = 852 bits (461), Expect = 0.0
Identities = 710/827 (86%), Gaps = 30/827 (4%)
Strand=Plus/Plus
Query 535 TAGCAACGAGTTTTTCGGTCTCTTCATGGATGATACCATGA-TGTACTCCTCTGCAGTAT 593
|||||||||| |||||||| ||||| | ||||||||||||| | ||||||||||||||||
Sbjct 1770 TAGCAACGAGCTTTTCGGTTTCTTCTTAGATGATACCATGACT-TACTCCTCTGCAGTAT 1828
Query 594 T-CA-----A-GGTGACCAT-TAAAAACTTC-CAGAATGAGAAAAATACATCT-TT-TAA 642
| || | | ||| || | | |||| | ||| ||||| ||||| | ||| || | |
Sbjct 1829 TCCAGTCGGATGATGAGGATCTGAGAACTGCACAG-ATGAGGAAAAT-C-TCTCTTCTGA 1885
Query 643 TCGAAAAGGCGAGGATAAAGAAGAACCATATGAGGTTTTAGAGATAGGATGCGGATGGGG 702
| || |||||||| ||| ||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1886 TTGATAAGGCGAGAATAGAGAAGAACC--ATGAGGTTTTAGAGATTGGATGCGGATGGGG 1943
Query 703 AACTTTAGCCATAGAAGTTGTGAAAAGAACTGGATGCAAATACACTGGCTTTACTCTATC 762
|||||| |||||||||||||||| ||||||||||||||||||||| ||| |||| |||||
Sbjct 1944 AACTTTGGCCATAGAAGTTGTGAGAAGAACTGGATGCAAATACACCGGCATTACGCTATC 2003
Query 763 TATTGAACAACTTAAATATG-TAGAAGAGAAAGTTAAAGAAGCTGGACTTCAGGAGCGGA 821
||| ||||| |||||||||| | ||||| ||||| |||||||||||||| ||||| ||||
Sbjct 2004 TATAGAACAGCTTAAATATGCT-GAAGAAAAAGTGAAAGAAGCTGGACTGCAGGACCGGA 2062
Query 822 TTACGTTTAAGCTCTGCGATTATCGCCAACTATGTGATACTCAAAAATATGACAGAATTA 881
|||| ||| ||||| |||||||||||||||||| |||| |||| ||||||||||||||||
Sbjct 2063 TTACTTTTGAGCTCCGCGATTATCGCCAACTATCTGATGCTCACAAATATGACAGAATTA 2122
Query 882 TATCTTGTGAGATGATAGAA-CATGTTGGCCACAAATTCATGGAGACATTTTTCAGTC-A 939
|||||||||||||| ||||| | || || || | |||||||| | |||||||||| |
Sbjct 2123 TATCTTGTGAGATGCTAGAAGC-GGTCGGACATGAGTTCATGGATATGTTTTTCAGTCGA 2181
Query 940 CTGTGAAGCTGCGCTTGCAGAAGACGGCATTTTTGTCCTCCAGTTCACAGCAATACCTGA 999
|||||||| |||||||||||| ||||| | ||||| | ||||||| | | ||||| ||
Sbjct 2182 -TGTGAAGCCGCGCTTGCAGAAAACGGCCTAATTGTCTTGCAGTTCATATCGATACCCGA 2240
Query 1000 GGAGCTTTACGACGAG-AGCAGACTAACTTCAGGTTTCATAACGGAATACATATTCCCTG 1058
|||| |||| | ||| | |||||||| ||||| |||||||| ||||||||||||||||
Sbjct 2241 AGAGCGTTACAATGAGTA-CAGACTAAGTTCAGATTTCATAAAAGAATACATATTCCCTG 2299
Query 1059 GTGGATGTCTTCCTTCTTTAGCCAGAGTTACTTCAGCCATGGCCTCTTCCTCTAGGCTAT 1118
||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 2300 GTGGATGCCTTCCTTCTTTAGCCAGAGTTACTTCAGCCATGTCCTCTTCTTCTAGGCTAT 2359
Query 1119 GCATTGAAAACGTTGAGAACATTGGGATTCATTACTATCCTA-CGTTGAGA-TACTGGAG 1176
|||||||| |||||||||||||||||||||||||||| || | | |||||| | |||||
Sbjct 2360 GCATTGAACACGTTGAGAACATTGGGATTCATTACTA-CCAAACATTGAGAGTG-TGGAG 2417
Query 1177 GAAGAACTTATTGGAGAGACAAAAACAAATCATTGATCTTGGATTCGACGAGAAATTCTT 1236
||||||||| ||||||||||| ||||||||||| | ||||||||| || || |||||| |
Sbjct 2418 GAAGAACTTCTTGGAGAGACAGAAACAAATCATGGCTCTTGGATTTGATGATAAATTCAT 2477
Query 1237 AAGGACATGGGAATATTATTTCGACTACTGTGCAGCTGGGTTCAAGACTCTTACCCTTAG 1296
|||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| |
Sbjct 2478 AAGGACATGGGAATATTATTTCGATTATTGTGCAGCTGGTTTCAAGACTCTTACCCTTGG 2537
Query 1297 AAACTACCAGATAGTTTTCTCACGTCCAGGGAACGTAGCTGCATTCG 1343
|||||||||| | || ||||| || ||||||||||||||||||||||
Sbjct 2538 AAACTACCAGTTGGTGTTCTCGCGCCCAGGGAACGTAGCTGCATTCG 2584
Score = 424 bits (229), Expect = 1e-117
Identities = 385/458 (84%), Gaps = 20/458 (4%)
Strand=Plus/Plus
Query 85 TGCACGAGGTTTGTTAGGGATACAAACAACTCTTGTGAAAAATATGCAACATATGGTATT 144
|||||||||||||||||||| | |||| |||| | || ||| || |||||||||
Sbjct 1266 TGCACGAGGTTTGTTAGGGAAAGAAACCGCTCTCCTCAACAATCCGCTACATATGGTCCC 1325
Query 145 TTCCCTAACCGAAGCAGGGGCTCGACTTTTCGTTACCAGATTCTTTAGACAATTCATATC 204
|||| | || ||| | |||||||| ||||| ||||| |||||||| ||||||| |||||
Sbjct 1326 TTCCTTGACAGAAACCGGGGCTCGGCTTTTTGTTACTAGATTCTTGGGACAATTTATATC 1385
Query 205 GATCGGTTGTGTAACGATACT---AGAAGGA-GACACGATATTCATATTTGG-GGAAAAT 259
| ||| | |||||| ||||| ||||||| || || || |||| ||| || || ||
Sbjct 1386 AACCGGCTCTGTAACAATACTAGAAGAAGGAGGA-ACAATGTTCACATTCGGAGG-GAAG 1443
Query 260 GAATCTACTTGTCCTTTGAAATCTATCCTCAAGATTCACAGTCCTCAGTTTTACTGGAAG 319
|| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1444 GATTCTACATGTCCATTGAAATCTATCCTCAAGATTCACAGTCCTCAATTTTACTGGAAG 1503
Query 320 GTTATGACACTAGCAGATTTAGGACTTGCAGATGCTTATATCAATGGAGATTTTTCTTTC 379
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 GTTATGACACAAGCGGATTTAGGACTTGCAGATGCTTATATCAATGGAGATTTTTCTTTC 1563
Query 380 GTCGATAAAGACTCAGGACTTTTGAATCTGATTATGATTCTCATTGCAAACAGAGACCTG 439
||||||||||||||||||||||||||| | ||||||||||||||||| || ||||| |
Sbjct 1564 GTCGATAAAGACTCAGGACTTTTGAATTTAATTATGATTCTCATTGCTAATAGAGA--T- 1620
Query 440 AACTCACGAAAATCAAACCTTGCCAAGAAAAGGGGATGGTGGACACC-AGTGTTTCTAAC 498
| | | ||| ||||| ||| | ||||||||||||||||||||||| | ||||||||||
Sbjct 1621 A-C--A--AAA-TCAAATCTTACTAAGAAAAGGGGATGGTGGACACCGA-TGTTTCTAAC 1673
Query 499 TGCCAGCTTAGCATCTGCAACA-TATTATCTAAAGCAT 535
|||| | |||||||| |||| | |||| ||||||||||
Sbjct 1674 TGCCGGTTTAGCATCGGCAA-AGTATTTTCTAAAGCAT 1710
> Ahg359447 jgi|Araly1|359447|fgenesh1_pg.C_scaffold_242000003
Length=642
Score = 582 bits (315), Expect = 2e-165
Identities = 406/450 (90%), Gaps = 6/450 (1%)
Strand=Plus/Plus
Query 651 GCGAGGATAAAGAAGAACCATATGAGGTTTTAGAGATAGGATGCGGATGGGGAACTTTAG 710
||||||||| ||||||||| ||||||||||||| || |||||||||||||||||||| |
Sbjct 1 GCGAGGATAGAGAAGAACC--ATGAGGTTTTAGATATTGGATGCGGATGGGGAACTTTGG 58
Query 711 CCATAGAAGTTGTGAAAAGAACTGGATGCAAATACACTGGCT-TTACTCTATCTATTGAA 769
||||||||| ||||| |||||||||||||||||| ||||| | |||| ||||||||||||
Sbjct 59 CCATAGAAGCTGTGAGAAGAACTGGATGCAAATATACTGG-TATTACGCTATCTATTGAA 117
Query 770 CAACTTAAATATGTAGAAGAGAAAGTTAAAGAAGCTGGACTTCAGGAGCGGATTACGTTT 829
|||||||| |||| |||||| ||||| ||| || ||||||||||||| ||||||||||||
Sbjct 118 CAACTTAAGTATGCAGAAGAAAAAGTAAAACAAACTGGACTTCAGGACCGGATTACGTTT 177
Query 830 AAGCTCTGCGATTATCGCCAACTATGTGATACTCAAAAATATGACAGAATTATATCTTGT 889
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 178 AAGCTCTGCGATTATCGCCAACTATCTGATGCTCAAAAATATGACAGAATTATATCTTGC 237
Query 890 GAGATGATAGAACATGTTGGCCACAAATTCATGGAGACATTTTTCAGTCACTGTGAAGCT 949
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GAGATGCTAGAACATGTTGGCCACAAATTCATGGAGACATTTTTCAGTCACTGTGAAGCT 297
Query 950 GCGCTTGCAGAAGACGGCATTTTTGTCCTCCAGTTCACAGCAATACCTGAGGAGCTTTAC 1009
|||||||| |||||||||||||||||| | ||||| | | | ||||| || || | ||||
Sbjct 298 GCGCTTGCGGAAGACGGCATTTTTGTCTTGCAGTTTATATCGATACCCGAAGAACGTTAC 357
Query 1010 GACGAG-AGCAGACTAACTTCAGGTTTCATAACGGAATACATATTCCCTGGTGGATGTCT 1068
| ||| | |||||||| ||||| |||||||| |||||||||||||| |||||||| ||
Sbjct 358 AATGAGTA-CAGACTAAATTCAGATTTCATAAAAGAATACATATTCCCAGGTGGATGCCT 416
Query 1069 TCCTTCTTTAGCCAGAGTTACTTCAGCCAT 1098
||||||||||||||||||||||||||||||
Sbjct 417 TCCTTCTTTAGCCAGAGTTACTTCAGCCAT 446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59077969995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5