BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G23480.2 Length=1577 Score E Sequences producing significant alignments: (Bits) Value Ahg905398 jgi|Araly1|905398|Al_scaffold_0003_2526 883 0.0 Ahg930378 jgi|Araly1|930378|scaffold_302835.1 852 0.0 Ahg359447 jgi|Araly1|359447|fgenesh1_pg.C_scaffold_242000003 582 2e-165 > Ahg905398 jgi|Araly1|905398|Al_scaffold_0003_2526 Length=1026 Score = 883 bits (478), Expect = 0.0 Identities = 664/752 (88%), Gaps = 19/752 (3%) Strand=Plus/Plus Query 606 TTAAAAACTTC-CAGAATGAGAAAAATACATCTTTTAATCGAAAAGGCGAGGATAAAGAA 664 ||||| ||| | || ||||||||||||| ||||| | || || ||| |||||||| |||| Sbjct 280 TTAAAGACTGCACA-AATGAGAAAAATATATCTTCTCATTGATAAGTCGAGGATAGAGAA 338 Query 665 GAACCATATGAGGTTTTAGAGATAGGATGCGGATGGGGAACTTTAGCCATAGAAGTTGTG 724 ||||| ||||||| ||||| || |||||||||||||||||||| |||||||||| |||| Sbjct 339 GAACC--ATGAGGTCTTAGATATTGGATGCGGATGGGGAACTTTGGCCATAGAAGCTGTG 396 Query 725 AAAAGAACTGGATGCAAATACACTGGCT-TTACTCTATCTATTGAACAACTTAAATATGT 783 | |||||||||||||||||| || || | |||| ||||| |||||||||||||| |||| Sbjct 397 AGAAGAACTGGATGCAAATATACCGG-TATTACGCTATCAATTGAACAACTTAAGTATGC 455 Query 784 AGAAGAGAAAGTTAAAGAAGCTGGACTTCAGGAGCGGATTACGTTTAAGCTCTGCGATTA 843 |||||| ||||| ||| |||||||||||||||| |||||||||||||||||||||||||| Sbjct 456 AGAAGAAAAAGTGAAACAAGCTGGACTTCAGGACCGGATTACGTTTAAGCTCTGCGATTA 515 Query 844 TCGCCAACTATGTGATACTCAAAAATATGACAGAATTATATCTTGTGAGATGATAGAACA 903 ||||||||||| |||| |||||||||||||||||||||||||||| |||| | ||||||| Sbjct 516 TCGCCAACTATCTGATGCTCAAAAATATGACAGAATTATATCTTGCGAGAGGCTAGAACA 575 Query 904 TGTTGGCCACAAATTCATGGAGACATTTTTCAGTCACTGTGAAGCTGCGCTTGCAGAAGA 963 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 576 TGTTGGCCACAAATTCATGGAGACATTTTTCAGTCACTGTGAAGCTGCGCTTGCGGAAGA 635 Query 964 CGGCATTTTTGTCCTCCAGTTCACAGCAATACCTGAGGAGCTTTACGACGAG-AGCAGAC 1022 ||||||||||||| | | ||| | | | ||||| || || | |||| | ||| | ||||| Sbjct 636 CGGCATTTTTGTCTTGCTGTTTATATCGATACCCGAAGAACGTTACAATGAGTA-CAGAC 694 Query 1023 TAACTTCAGGTTTCATAACGGAATACATATTCCCTGGTGGATGTCTTCCTTCTTTAGCCA 1082 ||| ||||| |||||||| |||||||||||||| |||||||| |||||||||||||||| Sbjct 695 TAAATTCAGATTTCATAAAAGAATACATATTCCCAGGTGGATGCCTTCCTTCTTTAGCCA 754 Query 1083 GAGTTACTTCAGCCATGGCCTCTTCCTCTAGGCTATGCATTGAAAACGTTGAGAACATTG 1142 ||||||||||||||||| ||||||| |||||||||||||||||| | ||||||||||||| Sbjct 755 GAGTTACTTCAGCCATGTCCTCTTCTTCTAGGCTATGCATTGAACATGTTGAGAACATTG 814 Query 1143 GGATTCATTACTATCCTA-CGTTGAGATACTGGAGGAAGAACTTATTGGAGAGACAAAAA 1201 ||||||||||||| || | || |||||| ||||||||||| || ||||||||||||||| Sbjct 815 GGATTCATTACTA-CCAAACGCTGAGATTGTGGAGGAAGAATTTCTTGGAGAGACAAAAA 873 Query 1202 CAAATCATTGATCTTGGATTCGACGAGAAATTC-TTAAGGACATGGGAATATTATTTCGA 1260 |||||||| ||||||||||||||||| |||||| ||| ||| |||||||||||||||||| Sbjct 874 CAAATCATCGATCTTGGATTCGACGATAAATTCATTA-GGATATGGGAATATTATTTCGA 932 Query 1261 CTACTGTGCAGCTGGGTTCAAGACTCTTACCCTTAGA------A-ACTACCAGATAGTTT 1313 ||| ||||||||||| |||||||||||||||||| | | ||||||||||| ||| Sbjct 933 CTATTGTGCAGCTGGTTTCAAGACTCTTACCCTTGGTCCTTGGAGACTACCAGATATTTT 992 Query 1314 TCTCACGTCCAGGGAACGTAGCTGCATTCGGT 1345 ||||||||||||||||||||| |||||||||| Sbjct 993 TCTCACGTCCAGGGAACGTAGTTGCATTCGGT 1024 > Ahg930378 jgi|Araly1|930378|scaffold_302835.1 Length=2648 Score = 852 bits (461), Expect = 0.0 Identities = 710/827 (86%), Gaps = 30/827 (4%) Strand=Plus/Plus Query 535 TAGCAACGAGTTTTTCGGTCTCTTCATGGATGATACCATGA-TGTACTCCTCTGCAGTAT 593 |||||||||| |||||||| ||||| | ||||||||||||| | |||||||||||||||| Sbjct 1770 TAGCAACGAGCTTTTCGGTTTCTTCTTAGATGATACCATGACT-TACTCCTCTGCAGTAT 1828 Query 594 T-CA-----A-GGTGACCAT-TAAAAACTTC-CAGAATGAGAAAAATACATCT-TT-TAA 642 | || | | ||| || | | |||| | ||| ||||| ||||| | ||| || | | Sbjct 1829 TCCAGTCGGATGATGAGGATCTGAGAACTGCACAG-ATGAGGAAAAT-C-TCTCTTCTGA 1885 Query 643 TCGAAAAGGCGAGGATAAAGAAGAACCATATGAGGTTTTAGAGATAGGATGCGGATGGGG 702 | || |||||||| ||| ||||||||| |||||||||||||||| |||||||||||||| Sbjct 1886 TTGATAAGGCGAGAATAGAGAAGAACC--ATGAGGTTTTAGAGATTGGATGCGGATGGGG 1943 Query 703 AACTTTAGCCATAGAAGTTGTGAAAAGAACTGGATGCAAATACACTGGCTTTACTCTATC 762 |||||| |||||||||||||||| ||||||||||||||||||||| ||| |||| ||||| Sbjct 1944 AACTTTGGCCATAGAAGTTGTGAGAAGAACTGGATGCAAATACACCGGCATTACGCTATC 2003 Query 763 TATTGAACAACTTAAATATG-TAGAAGAGAAAGTTAAAGAAGCTGGACTTCAGGAGCGGA 821 ||| ||||| |||||||||| | ||||| ||||| |||||||||||||| ||||| |||| Sbjct 2004 TATAGAACAGCTTAAATATGCT-GAAGAAAAAGTGAAAGAAGCTGGACTGCAGGACCGGA 2062 Query 822 TTACGTTTAAGCTCTGCGATTATCGCCAACTATGTGATACTCAAAAATATGACAGAATTA 881 |||| ||| ||||| |||||||||||||||||| |||| |||| |||||||||||||||| Sbjct 2063 TTACTTTTGAGCTCCGCGATTATCGCCAACTATCTGATGCTCACAAATATGACAGAATTA 2122 Query 882 TATCTTGTGAGATGATAGAA-CATGTTGGCCACAAATTCATGGAGACATTTTTCAGTC-A 939 |||||||||||||| ||||| | || || || | |||||||| | |||||||||| | Sbjct 2123 TATCTTGTGAGATGCTAGAAGC-GGTCGGACATGAGTTCATGGATATGTTTTTCAGTCGA 2181 Query 940 CTGTGAAGCTGCGCTTGCAGAAGACGGCATTTTTGTCCTCCAGTTCACAGCAATACCTGA 999 |||||||| |||||||||||| ||||| | ||||| | ||||||| | | ||||| || Sbjct 2182 -TGTGAAGCCGCGCTTGCAGAAAACGGCCTAATTGTCTTGCAGTTCATATCGATACCCGA 2240 Query 1000 GGAGCTTTACGACGAG-AGCAGACTAACTTCAGGTTTCATAACGGAATACATATTCCCTG 1058 |||| |||| | ||| | |||||||| ||||| |||||||| |||||||||||||||| Sbjct 2241 AGAGCGTTACAATGAGTA-CAGACTAAGTTCAGATTTCATAAAAGAATACATATTCCCTG 2299 Query 1059 GTGGATGTCTTCCTTCTTTAGCCAGAGTTACTTCAGCCATGGCCTCTTCCTCTAGGCTAT 1118 ||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 2300 GTGGATGCCTTCCTTCTTTAGCCAGAGTTACTTCAGCCATGTCCTCTTCTTCTAGGCTAT 2359 Query 1119 GCATTGAAAACGTTGAGAACATTGGGATTCATTACTATCCTA-CGTTGAGA-TACTGGAG 1176 |||||||| |||||||||||||||||||||||||||| || | | |||||| | ||||| Sbjct 2360 GCATTGAACACGTTGAGAACATTGGGATTCATTACTA-CCAAACATTGAGAGTG-TGGAG 2417 Query 1177 GAAGAACTTATTGGAGAGACAAAAACAAATCATTGATCTTGGATTCGACGAGAAATTCTT 1236 ||||||||| ||||||||||| ||||||||||| | ||||||||| || || |||||| | Sbjct 2418 GAAGAACTTCTTGGAGAGACAGAAACAAATCATGGCTCTTGGATTTGATGATAAATTCAT 2477 Query 1237 AAGGACATGGGAATATTATTTCGACTACTGTGCAGCTGGGTTCAAGACTCTTACCCTTAG 1296 |||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| | Sbjct 2478 AAGGACATGGGAATATTATTTCGATTATTGTGCAGCTGGTTTCAAGACTCTTACCCTTGG 2537 Query 1297 AAACTACCAGATAGTTTTCTCACGTCCAGGGAACGTAGCTGCATTCG 1343 |||||||||| | || ||||| || |||||||||||||||||||||| Sbjct 2538 AAACTACCAGTTGGTGTTCTCGCGCCCAGGGAACGTAGCTGCATTCG 2584 Score = 424 bits (229), Expect = 1e-117 Identities = 385/458 (84%), Gaps = 20/458 (4%) Strand=Plus/Plus Query 85 TGCACGAGGTTTGTTAGGGATACAAACAACTCTTGTGAAAAATATGCAACATATGGTATT 144 |||||||||||||||||||| | |||| |||| | || ||| || ||||||||| Sbjct 1266 TGCACGAGGTTTGTTAGGGAAAGAAACCGCTCTCCTCAACAATCCGCTACATATGGTCCC 1325 Query 145 TTCCCTAACCGAAGCAGGGGCTCGACTTTTCGTTACCAGATTCTTTAGACAATTCATATC 204 |||| | || ||| | |||||||| ||||| ||||| |||||||| ||||||| ||||| Sbjct 1326 TTCCTTGACAGAAACCGGGGCTCGGCTTTTTGTTACTAGATTCTTGGGACAATTTATATC 1385 Query 205 GATCGGTTGTGTAACGATACT---AGAAGGA-GACACGATATTCATATTTGG-GGAAAAT 259 | ||| | |||||| ||||| ||||||| || || || |||| ||| || || || Sbjct 1386 AACCGGCTCTGTAACAATACTAGAAGAAGGAGGA-ACAATGTTCACATTCGGAGG-GAAG 1443 Query 260 GAATCTACTTGTCCTTTGAAATCTATCCTCAAGATTCACAGTCCTCAGTTTTACTGGAAG 319 || ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1444 GATTCTACATGTCCATTGAAATCTATCCTCAAGATTCACAGTCCTCAATTTTACTGGAAG 1503 Query 320 GTTATGACACTAGCAGATTTAGGACTTGCAGATGCTTATATCAATGGAGATTTTTCTTTC 379 |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1504 GTTATGACACAAGCGGATTTAGGACTTGCAGATGCTTATATCAATGGAGATTTTTCTTTC 1563 Query 380 GTCGATAAAGACTCAGGACTTTTGAATCTGATTATGATTCTCATTGCAAACAGAGACCTG 439 ||||||||||||||||||||||||||| | ||||||||||||||||| || ||||| | Sbjct 1564 GTCGATAAAGACTCAGGACTTTTGAATTTAATTATGATTCTCATTGCTAATAGAGA--T- 1620 Query 440 AACTCACGAAAATCAAACCTTGCCAAGAAAAGGGGATGGTGGACACC-AGTGTTTCTAAC 498 | | | ||| ||||| ||| | ||||||||||||||||||||||| | |||||||||| Sbjct 1621 A-C--A--AAA-TCAAATCTTACTAAGAAAAGGGGATGGTGGACACCGA-TGTTTCTAAC 1673 Query 499 TGCCAGCTTAGCATCTGCAACA-TATTATCTAAAGCAT 535 |||| | |||||||| |||| | |||| |||||||||| Sbjct 1674 TGCCGGTTTAGCATCGGCAA-AGTATTTTCTAAAGCAT 1710 > Ahg359447 jgi|Araly1|359447|fgenesh1_pg.C_scaffold_242000003 Length=642 Score = 582 bits (315), Expect = 2e-165 Identities = 406/450 (90%), Gaps = 6/450 (1%) Strand=Plus/Plus Query 651 GCGAGGATAAAGAAGAACCATATGAGGTTTTAGAGATAGGATGCGGATGGGGAACTTTAG 710 ||||||||| ||||||||| ||||||||||||| || |||||||||||||||||||| | Sbjct 1 GCGAGGATAGAGAAGAACC--ATGAGGTTTTAGATATTGGATGCGGATGGGGAACTTTGG 58 Query 711 CCATAGAAGTTGTGAAAAGAACTGGATGCAAATACACTGGCT-TTACTCTATCTATTGAA 769 ||||||||| ||||| |||||||||||||||||| ||||| | |||| |||||||||||| Sbjct 59 CCATAGAAGCTGTGAGAAGAACTGGATGCAAATATACTGG-TATTACGCTATCTATTGAA 117 Query 770 CAACTTAAATATGTAGAAGAGAAAGTTAAAGAAGCTGGACTTCAGGAGCGGATTACGTTT 829 |||||||| |||| |||||| ||||| ||| || ||||||||||||| |||||||||||| Sbjct 118 CAACTTAAGTATGCAGAAGAAAAAGTAAAACAAACTGGACTTCAGGACCGGATTACGTTT 177 Query 830 AAGCTCTGCGATTATCGCCAACTATGTGATACTCAAAAATATGACAGAATTATATCTTGT 889 ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| Sbjct 178 AAGCTCTGCGATTATCGCCAACTATCTGATGCTCAAAAATATGACAGAATTATATCTTGC 237 Query 890 GAGATGATAGAACATGTTGGCCACAAATTCATGGAGACATTTTTCAGTCACTGTGAAGCT 949 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 GAGATGCTAGAACATGTTGGCCACAAATTCATGGAGACATTTTTCAGTCACTGTGAAGCT 297 Query 950 GCGCTTGCAGAAGACGGCATTTTTGTCCTCCAGTTCACAGCAATACCTGAGGAGCTTTAC 1009 |||||||| |||||||||||||||||| | ||||| | | | ||||| || || | |||| Sbjct 298 GCGCTTGCGGAAGACGGCATTTTTGTCTTGCAGTTTATATCGATACCCGAAGAACGTTAC 357 Query 1010 GACGAG-AGCAGACTAACTTCAGGTTTCATAACGGAATACATATTCCCTGGTGGATGTCT 1068 | ||| | |||||||| ||||| |||||||| |||||||||||||| |||||||| || Sbjct 358 AATGAGTA-CAGACTAAATTCAGATTTCATAAAAGAATACATATTCCCAGGTGGATGCCT 416 Query 1069 TCCTTCTTTAGCCAGAGTTACTTCAGCCAT 1098 |||||||||||||||||||||||||||||| Sbjct 417 TCCTTCTTTAGCCAGAGTTACTTCAGCCAT 446 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59077969995 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5