BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23490.1
Length=971
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479859 jgi|Araly1|479859|fgenesh2_kg.3__2560__AT3G23490.1 1168 0.0
Ahg887824 jgi|Araly1|887824|Al_scaffold_0242_2 747 0.0
> Ahg479859 jgi|Araly1|479859|fgenesh2_kg.3__2560__AT3G23490.1
Length=844
Score = 1168 bits (632), Expect = 0.0
Identities = 741/792 (94%), Gaps = 14/792 (2%)
Strand=Plus/Plus
Query 186 TTTCCATTAAAAGAGTGAGGAAGAGACAAAAGTGATTGATTGGTCAG-AAAAAATGGAAG 244
||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 56 TTTCCATAAAAAGAGTGAGGAAGAGACAAAAGTGATTGATTGGTC-GAAAAAAATGGAAG 114
Query 245 CGGCGAAGAAACAGAGTGTTACAAATCAGCTTCTCGCCGTGAAATCAGCTTCCGGCAAGA 304
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 115 CGGCGAAGAAACAGAGTGTTACAAATCAGCTTCTCGCCGTGAAAACAGCTTCCGGCAAGA 174
Query 305 CTTTTAGCCAGTTAGCCGCGGAGACAGGTCTAACCAACGTATACGTAGCTCAGCTTCTCC 364
|||||||||| ||||| |||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 175 CTTTTAGCCAATTAGCGGCGGAGACTGGTCTCACCAACGTCTACGTAGCTCAGCTTCTCC 234
Query 365 GTCGTCAAGCTCAGCTCAAACCGGACACAGTCCCAAAGCTTAAGGAAGCTTTACCAGCTC 424
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 235 GTCGCCAAGCTCAGCTCAAACCGGACACAGTCCCGAAGCTTAAGGAAGCTTTACCAGCTC 294
Query 425 TGACCGATGAACTAATCGGAGATATGATGTCTCCTCCGTGGAGATCCTATGATCCTAATC 484
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 295 TGACCGATGAACTAATCGGAGATATGATGTCTCCGCCGTGGAGATCTTATGATCCTAATC 354
Query 485 TCATCCAAGAACCCACTATCTACAGGTTGAATGAAGCAGTGATGCATTTTGGTGAGAGTA 544
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TCATTCAAGAACCCACTATCTACAGGTTGAATGAAGCAGTGATGCATTTTGGTGAGAGTA 414
Query 545 TAAAGGAGATTATCAATGAAGATTTTGGAGATGGCATCATGTCGGCGATAGATTTCTATT 604
|||||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||
Sbjct 415 TAAAGGAGATTATCAATGAAGATTTTGGCGACGGCATCATGTCGGCAATAGACTTCTATT 474
Query 605 GCTCTGTCGACAAAATCAAAGGAGTGGATGGTAACAATCGCGTGGTTGTGACGCTTGATG 664
||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 475 GCTCTGTGGACAAAATCAAAGGAGTGGATGGTAACAATCGTGTGGTCGTGACGCTTGATG 534
Query 665 GAAAGTATCTTTCGCATTCCGAACAGAGGACGGAGAATATGGTCTCAAGGCTAAATCTCA 724
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 535 GGAAGTATCTTTCGCATTCCGAACAGAGGACGGAGAATATGGTCTCAAGGCTAAACCTCA 594
Query 725 AGGGAGGTACAAGCGAATGATA--A--G-AAAG---CCTTTACGTATCCATGAAGGCCTT 776
||||| ||||||| |||||||| | | |||| ||||| |||| ||||||| ||||
Sbjct 595 AGGGAAGTACAAGTGAATGATATGAATGTAAAGAAGCCTTTTCGTAACCATGAAAGCCTC 654
Query 777 ATTGTAAGTGGTAACGTTGTAATACCTATG-TGTTTGTTTATCTGTAATATATGCAACTT 835
||||||||| ||||||||||||| |||||| |||||||||||||||||| ||||||||||
Sbjct 655 ATTGTAAGTTGTAACGTTGTAATGCCTATGGTGTTTGTTTATCTGTAATCTATGCAACTT 714
Query 836 CAGCAT-CTAGATTAAAAGCTGTTTCAGGTTGAATAACAGTGAATAAACAAAACTTATAA 894
|||||| | ||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 715 CAGCATTCC-GATTAAA-GCTGTTTCAGGTTGAATAACAGTGAATAAATAAAACTTATAA 772
Query 895 AACCTTTCTATGTTTATCTTTAACATCGTAATCGAGTTCCGATTCATGCTTAATATCGAT 954
||||||| ||||||| | ||||||||||||||||||||| |||||||||||||||||| |
Sbjct 773 AACCTTTGTATGTTTGTATTTAACATCGTAATCGAGTTCTGATTCATGCTTAATATCGTT 832
Query 955 TGAATAAAGTTT 966
||||||||||||
Sbjct 833 TGAATAAAGTTT 844
> Ahg887824 jgi|Araly1|887824|Al_scaffold_0242_2
Length=543
Score = 747 bits (404), Expect = 0.0
Identities = 463/492 (94%), Gaps = 1/492 (0%)
Strand=Plus/Plus
Query 238 ATGGAAGCGGCGAAGAAACAGAGTGTTACAAATCAGCTTCTCGCCGTGAAATCAGCTTCC 297
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGGAAGCGGCGAAGAAACAGAGTGTTACAAATCAGCTTCTCGCCGTGAAAACAGCTTCC 60
Query 298 GGCAAGACTTTTAGCCAGTTAGCCGCGGAGACAGGTCTAACCAACGTATACGTAGCTCAG 357
||||||||||||||||| ||||| |||||||| ||||| |||||||| ||||||||||||
Sbjct 61 GGCAAGACTTTTAGCCAATTAGCGGCGGAGACTGGTCTCACCAACGTCTACGTAGCTCAG 120
Query 358 CTTCTCCGTCGTCAAGCTCAGCTCAAACCGGACACAGTCCCAAAGCTTAAGGAAGCTTTA 417
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 CTTCTCCGTCGCCAAGCTCAGCTCAAACCGGACACAGTCCCGAAGCTTAAGGAAGCTTTA 180
Query 418 CCAGCTCTGACCGATGAACTAATCGGAGATATGATGTCTCCTCCGTGGAGATCCTATGAT 477
|| |||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 181 CCGGCTCTGACTGATGAACTTATCGGAGATATGATGTCTCCGCCGTGGAGATCTTATGAT 240
Query 478 CCTAATCTCATCCAAGAACCCACTATCTACAGGTTGAATGAAGCAGTGATGCATTTTGGT 537
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCTAATCTCATTCAAGAACCCACTATCTACAGGTTGAATGAAGCAGTGATGCATTTTGGT 300
Query 538 GAGAGTATAAAGGAGATTATCAATGAAGATTTTGGAGATGGCATCATGTCGGCGATAGAT 597
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 301 GAGAGTATAAAGGAGATTATCAATGAAGATTTTGGCGACGGCATCATGTCGGCGATAGAC 360
Query 598 TTCTATTGCTCTGTCGACAAAATCAAAGGAGTGGATGGTAACAATCGCGTGGTTGTGACG 657
|||||||||||||| |||||| | ||||||||||||||||| ||||| ||||| || ||
Sbjct 361 TTCTATTGCTCTGTGGACAAAGTTAAAGGAGTGGATGGTAATAATCGTGTGGTCGTTACA 420
Query 658 CTTGATGGAAAGTATCTTTCGCATTCCGAACAGAGGACGGAGAATATGGTCTCAAGGCTA 717
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 421 CTTGATGGGAAGTATCTTTCGCATTTCGAACAGAGGACGGAGAATATGGTCTCAAGGCTA 480
Query 718 AATCTCAAGGGA 729
| |||||||||
Sbjct 481 AC-CTCAAGGGA 491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36064279482
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5