BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23510.1
Length=3062
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930378 jgi|Araly1|930378|scaffold_302835.1 4207 0.0
Ahg905398 jgi|Araly1|905398|Al_scaffold_0003_2526 891 0.0
Ahg359447 jgi|Araly1|359447|fgenesh1_pg.C_scaffold_242000003 547 2e-154
Ahg887823 jgi|Araly1|887823|Al_scaffold_0242_1 520 3e-146
> Ahg930378 jgi|Araly1|930378|scaffold_302835.1
Length=2648
Score = 4207 bits (2278), Expect = 0.0
Identities = 2523/2644 (95%), Gaps = 5/2644 (0%)
Strand=Plus/Plus
Query 286 aaaatagagagaagaaaaatgaaaGTGGCAGTTATAGGAAGTGGTATAAGTGGATTAGGA 345
|||| ||| |||| |||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 8 AAAAAAGA-AGAAAAAAAATGAAAGTGGCAGTGATAGGAAGTGGAATAAGTGGATTAGGA 66
Query 346 AGTGCTTACGTACTTGCGAATCAAGGAGTTAAAGAAGTTGTGTTGTACGAGAAAGAAGAG 405
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 AGTGCTTACGTACTTGCAAATCAAGGAGTTAAAGAAGTTGTGTTGTACGAGAAAGAAGAG 126
Query 406 TCATTAGGAGGCCATGCCAAGACGGTGCGTTTCGATGGCGTTGACTTGGATCTTGGTTTC 465
||||||||||| ||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 127 TCATTAGGAGGTCATGCTAAAACGGTGCGTTTTGATGGCGTTGACTTGGATCTTGGTTTC 186
Query 466 ATGGTCTTTAATCGTGTTACATATCCAAACATGATAGAGTTCTTCGAGAACCTTGGAGTA 525
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 187 ATGGTCTTTAATCGTGTTACATATCCAAACATGATGGAGTTCTTCGAGAACCTTGGAGTA 246
Query 526 GAGATGGAGGTTTCAGACATGTCTTTCGCAGTGAGCCTTGACAATGGCAAAGGTTGTGAA 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 GAGATGGAGGTTTCAGACATGTCTTTCGCAGTGAGCCTTGACAATGGCAAAGGTTGTGAA 306
Query 586 TGGGGAAGCCGCAACGGTGTCTCGGGCTTATTTGCTCAAAAGAAGAACGTTTTAAATCCG 645
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 307 TGGGGAAGCCGCAACGGTATCTCGGGCTTATTTGCTCAGAAGAAGAACGTTTTAAATCCG 366
Query 646 TATTTCTGGCAAATGATCAGAGAAATTGTTAGATTTAAAGAAGACGTCTTAAATTACATT 705
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 367 TATTTCTGGCAAATGATCAGAGAAATTGTTAGATTTAAAGAAGACGTTTTAAAATACATT 426
Query 706 GAGAAGCTTGAGGGTAACCCCGATATCGATCGAAAGGAAACCTTAGGAGAATTTCTCAAT 765
||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 427 GAGGAGCTTGAGGGTAACCCCGATATTGATCGAAAGGAAACCTTAGGAGAATTCCTCAAT 486
Query 766 ACACGTGGATACTCTGAGTTGTTTCAGCAAGCTTACTTAGTACCGATATGCGGTTCGATA 825
| || ||||||||||||||||||||| |||||||||| || || |||||||||||||||
Sbjct 487 GCTCGCGGATACTCTGAGTTGTTTCAGAAAGCTTACTTGGTCCCAATATGCGGTTCGATA 546
Query 826 TGGTCATGCCCATCAGATGGTGTCTTAAGCTTCTCTGCTTACTCTGTTCTTTCGTTTTGT 885
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 TGGTCATGCCCATCAGATGGTGTCTTAAGCTTCTCTGCTTACTCTGTTCTTTCGTTTTGC 606
Query 886 TGCAACCACCACCTTCTTCAGATCTTTGGGAGGCCACAGTGGCTAACTGTTGCAGGACGT 945
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 607 TGCAACCACCATCTTCTTCAGATCTTTGGGAGGCCACAGTGGCTAACCGTTGCAGGACGT 666
Query 946 TCTCAGACTTACGTCGCAAAGGTTAGGGCAGAATTGGAGAGACTAGGATGCA-AGATCAG 1004
||||||||||| || || |||||||||||||||||||||||||||||||||| | |||||
Sbjct 667 TCTCAGACTTATGTAGCCAAGGTTAGGGCAGAATTGGAGAGACTAGGATGCACA-ATCAG 725
Query 1005 AACAAGCTGCGACGTAAAATCTGTTTCGACATCCGAAAATGGTTGTGTAACTGTTACAAG 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 AACAAGCTGCGACGTAAAATCTGTTTCGACATCCGAAAATGGTTGTGTAACTGTTACAAG 785
Query 1065 TGGAGATGGGTCTGAAGAAGTATTCGATAGGTGCATATTGGCTATGCACGCCCCAGATGC 1124
||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 TGGTGATGGATCTGAGGAAGTATTCGATAGGTGCATATTGGCTATGCACGCCCCAGATGC 845
Query 1125 TCTGAGATTGCTTGGTGAAGAAGTTACATTTGACGAATCTAGGGTTCTTGGTGCTTTCCA 1184
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 846 TCTGAGATTGCTTGGTGAAGAAGTTACATTTGACGAAAGTAGAGTTCTTGGTGCTTTCCG 905
Query 1185 ATACGTTTACAGCGATATATATCTCCATCATGACATTGATTTGATGCCACGGAACAAAGC 1244
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 906 ATACGTTTACAGCGATATATATCTCCATCACGACATTGATTTGATGCCACGGAACCAAGC 965
Query 1245 AGCGTGGAGTGCGTGGAATTTCTTGGGAAGTACGGAAAAGAAAGTATGTGTAACATACTG 1304
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 AGCGTGGAGCGCATGGAATTTCTTGGGAAGTACGGAAAAGAAAGTATGTGTAACATACTG 1025
Query 1305 GCTCAATATACTTCAGAACCTTGGCGAGAACAGTGAACCATTCTTTGTAACACTTAACCC 1364
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1026 GCTCAATATACTTCAGAACCTTGGCGAGAACCGCGAACCATTCTTTGTAACACTTAACCC 1085
Query 1365 AGACGAGACCCCAAAGAAAGCATTGCTCAAATGGACCACTGGTCACCCTGTACCATCAGT 1424
||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct 1086 AGACGAGACCCCAAAGAAAACATTGCTCAAATGGACCACTGGTCACCCTGTGCCTTCAGT 1145
Query 1425 TGCAGCTTCGATAGCTTCACAAGAGCTTCACCAGATTCAAGGCAAACGTAACATATGGTT 1484
|||||||| || ||||||||||||||||||| ||||||| || ||||||||| |||||||
Sbjct 1146 TGCAGCTTGGACAGCTTCACAAGAGCTTCACAAGATTCAGGGAAAACGTAACCTATGGTT 1205
Query 1485 CTGTGGTGCATATCAGGGCTATGGTTTCCATGAAGACGGGCTAAAGGCCGGTATGGCGGC 1544
||||||||||||||| |||||||| ||||||||||| || |||||||| |||||||||||
Sbjct 1206 CTGTGGTGCATATCAAGGCTATGGCTTCCATGAAGATGGACTAAAGGCTGGTATGGCGGC 1265
Query 1545 TGCACGAGGTTTGTTAGGGAAAGAAACAGCTCTTCTGAACAATCCGCGACATATGGTCCC 1604
||||||||||||||||||||||||||| ||||| || |||||||||| ||||||||||||
Sbjct 1266 TGCACGAGGTTTGTTAGGGAAAGAAACCGCTCTCCTCAACAATCCGCTACATATGGTCCC 1325
Query 1605 TTCCTTGACAGAAACAGGAGCTCGGCTTTTCGTTACTAGATTCTTGGGACAATTTATATC 1664
||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1326 TTCCTTGACAGAAACCGGGGCTCGGCTTTTTGTTACTAGATTCTTGGGACAATTTATATC 1385
Query 1665 AACCGGTTCTGTAACAATACTAGAAGAAGGAGGAACAATGTTCACATTCGGAGGGAAGGA 1724
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 AACCGGCTCTGTAACAATACTAGAAGAAGGAGGAACAATGTTCACATTCGGAGGGAAGGA 1445
Query 1725 TTCTACTTGTCC-TCTGAAATCTATCCTCAAGATTCACAGTCCTCAATTTTACTGGAAGG 1783
|||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446 TTCTACATGTCCAT-TGAAATCTATCCTCAAGATTCACAGTCCTCAATTTTACTGGAAGG 1504
Query 1784 TTATGACACAAGCGGATTTAGGACTTGCAGATGCTTATATCAATGGAGATTTTTCTTTCG 1843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1505 TTATGACACAAGCGGATTTAGGACTTGCAGATGCTTATATCAATGGAGATTTTTCTTTCG 1564
Query 1844 TTGATAAAGAATCAGGACTTTTAAATCTGATTATGATTCTCATTGCTAACAGAGATACAA 1903
| |||||||| ||||||||||| ||| | |||||||||||||||||||| ||||||||||
Sbjct 1565 TCGATAAAGACTCAGGACTTTTGAATTTAATTATGATTCTCATTGCTAATAGAGATACAA 1624
Query 1904 AATCAAATCTTACTAAGAAAAGGGGATGGTGGACACCGATGTTTTTAACTGCGGGTTTAG 1963
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1625 AATCAAATCTTACTAAGAAAAGGGGATGGTGGACACCGATGTTTCTAACTGCCGGTTTAG 1684
Query 1964 CATCTGCAAAGTATTTTCTAAAGCATGTCTCTAGGCAGAACACTCTAACACAAGCTCGTA 2023
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1685 CATCGGCAAAGTATTTTCTAAAGCATGTCTCTAGGCAGAACACTTTAACACAAGCGCGTA 1744
Query 2024 GAAACATTTCTCGTCACTATGACCTTAGCAACGAGCTTTTCGGTTTGTTCTTGGATGATA 2083
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1745 GAAACATTTCTCGTCACTATGACCTTAGCAACGAGCTTTTCGGTTTCTTCTTAGATGATA 1804
Query 2084 CCATGACTTACTCCTCGGCAGTATTCAAGTCGGATGATGAGGATCTGAGAACTGCACAGA 2143
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1805 CCATGACTTACTCCTCTGCAGTATTCCAGTCGGATGATGAGGATCTGAGAACTGCACAGA 1864
Query 2144 TGAGAAAAATATCTCTTCTGATTGATAAGGCGAGAATAGAGAAGGACCATGAGGTTTTAG 2203
|||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1865 TGAGGAAAATCTCTCTTCTGATTGATAAGGCGAGAATAGAGAAGAACCATGAGGTTTTAG 1924
Query 2204 AGATAGGATGTGGATGGGGAACTTTGGCCATAGAAGTTGTGAGAAGAACTGGATGCAAAT 2263
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 AGATTGGATGCGGATGGGGAACTTTGGCCATAGAAGTTGTGAGAAGAACTGGATGCAAAT 1984
Query 2264 ACACCGGCATTACGCTATCTATTGAGCAGCTTAAATATGCTGAAGAAAAAGTGAAAGAAG 2323
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1985 ACACCGGCATTACGCTATCTATAGAACAGCTTAAATATGCTGAAGAAAAAGTGAAAGAAG 2044
Query 2324 CTGGACTTCAGGACCGGATTACTTTTGAGCTCCGCGATTATCGCCAACTATCTGATGCTC 2383
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2045 CTGGACTGCAGGACCGGATTACTTTTGAGCTCCGCGATTATCGCCAACTATCTGATGCTC 2104
Query 2384 ACAAATATGACAGAATTATATCTTGCGAGATGCTAGAAGCGGTCGGACATGAGTTTATGG 2443
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 2105 ACAAATATGACAGAATTATATCTTGTGAGATGCTAGAAGCGGTCGGACATGAGTTCATGG 2164
Query 2444 AGATGTTTTTCAGTCGATGTGAAGCCGCACTTGCTGAAGACGGCCTAATGGTCTTGCAGT 2503
| |||||||||||||||||||||||||| ||||| ||| |||||||||| ||||||||||
Sbjct 2165 ATATGTTTTTCAGTCGATGTGAAGCCGCGCTTGCAGAAAACGGCCTAATTGTCTTGCAGT 2224
Query 2504 TCATATCGACACCCGAAGAGCGTTACAATGAGTACAGACTAAGTTCAGATTTCATTAAAG 2563
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2225 TCATATCGATACCCGAAGAGCGTTACAATGAGTACAGACTAAGTTCAGATTTCATAAAAG 2284
Query 2564 AATACATATTCCCTGGTGCATGCGTTCCTTCTTTAGCCAAAGTCACTTCAGCCATGTCCT 2623
|||||||||||||||||| |||| ||||||||||||||| ||| ||||||||||||||||
Sbjct 2285 AATACATATTCCCTGGTGGATGCCTTCCTTCTTTAGCCAGAGTTACTTCAGCCATGTCCT 2344
Query 2624 CTTCTTCTAGGCTATGCATTGAACATGTTGAGAACATTGGGATTCATTACTACCAAACAT 2683
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2345 CTTCTTCTAGGCTATGCATTGAACACGTTGAGAACATTGGGATTCATTACTACCAAACAT 2404
Query 2684 TGAGATTGTGGAGGAAGAACTTCTTGGAGAGACAGAAACAAATCATGGCTCTTGGATTTG 2743
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2405 TGAGAGTGTGGAGGAAGAACTTCTTGGAGAGACAGAAACAAATCATGGCTCTTGGATTTG 2464
Query 2744 ATGATAAATTCGTAAGGACATGGGAATATTATTTTGATTATTGCGCAGCTGGATTCAAGA 2803
||||||||||| |||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 2465 ATGATAAATTCATAAGGACATGGGAATATTATTTCGATTATTGTGCAGCTGGTTTCAAGA 2524
Query 2804 CTCGTACTCTTGGAGACTACCAGTTGGTGTTCTCGCGTCCAGGGAACGTAGCTGCATTTG 2863
||| ||| |||||| |||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 2525 CTCTTACCCTTGGAAACTACCAGTTGGTGTTCTCGCGCCCAGGGAACGTAGCTGCATTCG 2584
Query 2864 CGGATTCATACCGAGGATTTCCTTCTGCTTATTGTGTCTCTTGAGAGCAACAACATTTGG 2923
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 2585 CGGATTCATACCGAGGATTCCCTTCCGCTTATTGTGTCTCTTGAGAGCAACAACATTTGA 2644
Query 2924 TTGC 2927
||||
Sbjct 2645 TTGC 2648
> Ahg905398 jgi|Araly1|905398|Al_scaffold_0003_2526
Length=1026
Score = 891 bits (482), Expect = 0.0
Identities = 669/759 (88%), Gaps = 13/759 (2%)
Strand=Plus/Plus
Query 2113 TCGGATGATGAGGATCTGAGA-ACTGCACAGATGAGAAAAATATCTCTTCTGATTGATAA 2171
|||| |||||| ||| | | | |||||||| ||||||||||||| |||||| ||||||||
Sbjct 265 TCGGCTGATGAAGAT-TTAAAGACTGCACAAATGAGAAAAATATATCTTCTCATTGATAA 323
Query 2172 GGCGAGAATAGAGAAGGACCATGAGGTTTTAGAGATAGGATGTGGATGGGGAACTTTGGC 2231
| |||| ||||||||| |||||||||| ||||| || ||||| |||||||||||||||||
Sbjct 324 GTCGAGGATAGAGAAGAACCATGAGGTCTTAGATATTGGATGCGGATGGGGAACTTTGGC 383
Query 2232 CATAGAAGTTGTGAGAAGAACTGGATGCAAATACACCGGCATTACGCTATCTATTGAGCA 2291
|||||||| |||||||||||||||||||||||| ||||| ||||||||||| ||||| ||
Sbjct 384 CATAGAAGCTGTGAGAAGAACTGGATGCAAATATACCGGTATTACGCTATCAATTGAACA 443
Query 2292 GCTTAAATATGCTGAAGAAAAAGTGAAAGAAGCTGGACTTCAGGACCGGATTACTTTTGA 2351
||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| ||| |
Sbjct 444 ACTTAAGTATGCAGAAGAAAAAGTGAAACAAGCTGGACTTCAGGACCGGATTACGTTTAA 503
Query 2352 GCTCCGCGATTATCGCCAACTATCTGATGCTCACAAATATGACAGAATTATATCTTGCGA 2411
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 504 GCTCTGCGATTATCGCCAACTATCTGATGCTCAAAAATATGACAGAATTATATCTTGCGA 563
Query 2412 GATGCTAGAAGC-GGTCGGACATGAGTTTATGGAGATGTTTTTCAGTCGA-TGTGAAGCC 2469
|| ||||||| | || || || | || ||||||| |||||||||| | ||||||||
Sbjct 564 GAGGCTAGAA-CATGTTGGCCACAAATTCATGGAGACATTTTTCAGTC-ACTGTGAAGCT 621
Query 2470 GCACTTGCTGAAGACGGCCTAATGGTCTTGCAGTTCATATCGACACCCGAAGAGCGTTAC 2529
|| ||||| ||||||||| | | ||||||| ||| ||||||| ||||||||| ||||||
Sbjct 622 GCGCTTGCGGAAGACGGCATTTTTGTCTTGCTGTTTATATCGATACCCGAAGAACGTTAC 681
Query 2530 AATGAGTACAGACTAAGTTCAGATTTCATTAAAGAATACATATTCCCTGGTGCATGCGTT 2589
|||||||||||||||| |||||||||||| ||||||||||||||||| |||| |||| ||
Sbjct 682 AATGAGTACAGACTAAATTCAGATTTCATAAAAGAATACATATTCCCAGGTGGATGCCTT 741
Query 2590 CCTTCTTTAGCCAAAGTCACTTCAGCCATGTCCTCTTCTTCTAGGCTATGCATTGAACAT 2649
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 CCTTCTTTAGCCAGAGTTACTTCAGCCATGTCCTCTTCTTCTAGGCTATGCATTGAACAT 801
Query 2650 GTTGAGAACATTGGGATTCATTACTACCAAACATTGAGATTGTGGAGGAAGAACTTCTTG 2709
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 802 GTTGAGAACATTGGGATTCATTACTACCAAACGCTGAGATTGTGGAGGAAGAATTTCTTG 861
Query 2710 GAGAGACAGAAACAAATCATGGCTCTTGGATTTGATGATAAATTCGTAAGGACATGGGAA 2769
|||||||| ||||||||||| | ||||||||| || ||||||||| | |||| |||||||
Sbjct 862 GAGAGACAAAAACAAATCATCGATCTTGGATTCGACGATAAATTCATTAGGATATGGGAA 921
Query 2770 TATTATTTTGATTATTGCGCAGCTGGATTCAAGACTCGTAC--T----C-TTGGAGACTA 2822
|||||||| || ||||| |||||||| |||||||||| ||| | | ||||||||||
Sbjct 922 TATTATTTCGACTATTGTGCAGCTGGTTTCAAGACTCTTACCCTTGGTCCTTGGAGACTA 981
Query 2823 CCAGTTGGTGTTCTCGCGTCCAGGGAACGTAGCTGCATT 2861
|||| | | ||||| |||||||||||||||| ||||||
Sbjct 982 CCAGATATTTTTCTCACGTCCAGGGAACGTAGTTGCATT 1020
> Ahg359447 jgi|Araly1|359447|fgenesh1_pg.C_scaffold_242000003
Length=642
Score = 547 bits (296), Expect = 2e-154
Identities = 398/448 (89%), Gaps = 4/448 (1%)
Strand=Plus/Plus
Query 2173 GCGAGAATAGAGAAGGACCATGAGGTTTTAGAGATAGGATGTGGATGGGGAACTTTGGCC 2232
||||| ||||||||| |||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 1 GCGAGGATAGAGAAGAACCATGAGGTTTTAGATATTGGATGCGGATGGGGAACTTTGGCC 60
Query 2233 ATAGAAGTTGTGAGAAGAACTGGATGCAAATACACCGGCATTACGCTATCTATTGAGCAG 2292
||||||| |||||||||||||||||||||||| || || ||||||||||||||||| ||
Sbjct 61 ATAGAAGCTGTGAGAAGAACTGGATGCAAATATACTGGTATTACGCTATCTATTGAACAA 120
Query 2293 CTTAAATATGCTGAAGAAAAAGTGAAAGAAGCTGGACTTCAGGACCGGATTACTTTTGAG 2352
||||| ||||| ||||||||||| ||| || |||||||||||||||||||||| ||| ||
Sbjct 121 CTTAAGTATGCAGAAGAAAAAGTAAAACAAACTGGACTTCAGGACCGGATTACGTTTAAG 180
Query 2353 CTCCGCGATTATCGCCAACTATCTGATGCTCACAAATATGACAGAATTATATCTTGCGAG 2412
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 CTCTGCGATTATCGCCAACTATCTGATGCTCAAAAATATGACAGAATTATATCTTGCGAG 240
Query 2413 ATGCTAGAAGCG-GTCGGACATGAGTTTATGGAGATGTTTTTCAGTCGA-TGTGAAGCCG 2470
||||||||| | || || || | || ||||||| |||||||||| | |||||||| |
Sbjct 241 ATGCTAGAA-CATGTTGGCCACAAATTCATGGAGACATTTTTCAGTC-ACTGTGAAGCTG 298
Query 2471 CACTTGCTGAAGACGGCCTAATGGTCTTGCAGTTCATATCGACACCCGAAGAGCGTTACA 2530
| ||||| ||||||||| | | ||||||||||| ||||||| ||||||||| |||||||
Sbjct 299 CGCTTGCGGAAGACGGCATTTTTGTCTTGCAGTTTATATCGATACCCGAAGAACGTTACA 358
Query 2531 ATGAGTACAGACTAAGTTCAGATTTCATTAAAGAATACATATTCCCTGGTGCATGCGTTC 2590
||||||||||||||| |||||||||||| ||||||||||||||||| |||| |||| |||
Sbjct 359 ATGAGTACAGACTAAATTCAGATTTCATAAAAGAATACATATTCCCAGGTGGATGCCTTC 418
Query 2591 CTTCTTTAGCCAAAGTCACTTCAGCCAT 2618
|||||||||||| ||| |||||||||||
Sbjct 419 CTTCTTTAGCCAGAGTTACTTCAGCCAT 446
> Ahg887823 jgi|Araly1|887823|Al_scaffold_0242_1
Length=543
Score = 520 bits (281), Expect = 3e-146
Identities = 309/323 (96%), Gaps = 0/323 (0%)
Strand=Plus/Plus
Query 481 GTTACATATCCAAACATGATAGAGTTCTTCGAGAACCTTGGAGTAGAGATGGAGGTTTCA 540
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 160 GTTACATATCCAAACATGATGGAGTTCTTCGAGAACCTTGGAGTAGACATGGAGGTTTCA 219
Query 541 GACATGTCTTTCGCAGTGAGCCTTGACAATGGCAAAGGTTGTGAATGGGGAAGCCGCAAC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 GACATGTCTTTCGCAGTGAGCCTTGACAATGGCAAAGGTTGTGAATGGGGAAGCCGCAAC 279
Query 601 GGTGTCTCGGGCTTATTTGCTCAAAAGAAGAACGTTTTAAATCCGTATTTCTGGCAAATG 660
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 280 GGTGTCTCGGGCTTATTTGCTCAGAAGAAGAACGTTTTAAATCCGTATTTCTGGCAAATG 339
Query 661 ATCAGAGAAATTGTTAGATTTAAAGAAGACGTCTTAAATTACATTGAGAAGCTTGAGGGT 720
||||||||||||||||||||||||||||| || ||||| ||||| ||| |||||||||||
Sbjct 340 ATCAGAGAAATTGTTAGATTTAAAGAAGAGGTTTTAAAATACATCGAGGAGCTTGAGGGT 399
Query 721 AACCCCGATATCGATCGAAAGGAAACCTTAGGAGAATTTCTCAATACACGTGGATACTCT 780
||||||||||| |||||||||||||||||||||||||| |||||| | || |||||||||
Sbjct 400 AACCCCGATATTGATCGAAAGGAAACCTTAGGAGAATTCCTCAATGCTCGCGGATACTCT 459
Query 781 GAGTTGTTTCAGCAAGCTTACTT 803
|||||||||||| ||||||||||
Sbjct 460 GAGTTGTTTCAGAAAGCTTACTT 482
Score = 165 bits (89), Expect = 2e-39
Identities = 101/107 (94%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 325 AGTGGTATAAGTGGATTAGGAAGTGCTTACGTACTTGCGAATCAAGGAGTTAAAGAAGTT 384
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 55 AGTGGAATAAGTGGATTAGGGAGTGCTTACGTACTTGCAAATCAAGGAGTTAAAGAAGTT 114
Query 385 GTGTTGTACGAGAAAGAAGAGTCATTAGGAGGCCATGCCAAGACGGT 431
|||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 115 GTGTTGTACGAGAAAGAAGAGTCATTAGGAGGTCATGCTAAAACGGT 161
Score = 99.0 bits (53), Expect = 2e-19
Identities = 56/57 (98%), Gaps = 1/57 (2%)
Strand=Plus/Plus
Query 4 ATGTGGCTTGGCTTATCT-CTCAGCACAAGTGTTTCCTCTTAAACTCATCCAATAGT 59
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTGGCTTGGCTTATCTCCTCAGCACAAGTGTTTCCTCTTAAACTCATCCAATAGT 57
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115641983820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5