BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23540.1
Length=1921
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930379 jgi|Araly1|930379|scaffold_302836.1 2712 0.0
Ahg929406 jgi|Araly1|929406|scaffold_301863.1 427 1e-118
> Ahg930379 jgi|Araly1|930379|scaffold_302836.1
Length=1744
Score = 2712 bits (1468), Expect = 0.0
Identities = 1641/1724 (95%), Gaps = 13/1724 (1%)
Strand=Plus/Plus
Query 203 TTTCTGTGAGTTTCTATAATGGATCAGCTCGTTAACTTCATCATTCGACCTCCAAGAGCT 262
|||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 7 TTTCTGTGAGATTCTATAATGGAACAGCTTGTTAACTTCATCATTCGACCTCCAAGAGCT 66
Query 263 GAGTATGACCCGGAACATGATCTCTTGGAAAAGAAGTTTATGATGAAAGGTAGATGGTAT 322
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 67 GAGTATGACGCGGAACATGATCTCTTGGAAAAGGAGTTTATGATGAAAGGTAGATGGTAT 126
Query 323 CAGAGAAAAGATTTAGAGGTTAAAAACAGTAGGGGAGATGTTCTCCAGTGTAGTCATTAT 382
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 127 CAGAGAAAGGATTTAGAGGTTAAAAACAGTAGAGGAGATGTTCTCCAGTGTAGTCATTAT 186
Query 383 ATGCCAGTTGAACGCCCTGAAGGAAAGCCTTTACCCTGTGTAATATACTGCCACGGAAAC 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 ATGCCAGTTGAACGCCCTGAAGGAAAGCCTTTACCCTGTGTAATATACTGCCACGGAAAC 246
Query 443 AGTGGATGTAGAGCGGATGGTAGTGAAGCCGCAATTGTGTTGCTGCCTTCGAACATCACA 502
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 247 AGTGGATGTAGAGCGGATGGTAGTGAAGCCGCAATTGTGTTGCTGCCTTCAAACATCACA 306
Query 503 GTTTTTACCCTTGACTTTTCGGGATCGGGTCTCTCAGGCGGGGAACATGTCACCTTAGGC 562
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 307 GTTTTCACCCTTGACTTTTCGGGATCGGGTCTCTCAGGCGGGGAATATGTCACCTTAGGC 366
Query 563 TGGAACGAAAAGGATGATCTGAAGGCTGTGGTTGAGTTTTTGCGGCAGGATGGAAACATA 622
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 367 TGGAACGAAAAGGATGATCTGAAGGCTGTGGTCGAGTTTTTGCGGCAGGATGGAAATATA 426
Query 623 TCCTTGATTGGGCTATGGGGGCGGTCAATGGGTGCTGTTACTAGCTTGATGTATGGAGTC 682
||| | |||||| |||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 427 TCCCTAATTGGGTTATGGGGGCGTTCAATGGGTGCTGTTACTAGCTTGATGTATGGAGCC 486
Query 683 GAGGATCCTTCGATTGCAGGAATGATTCTAGACAGCCCCTTCTCCGATTTAGTTGATCTG 742
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 487 GAGGATCCTTCGATTGCAGGAATGATTCTAGACAGCCCCTTCTCCGATTTGGTTGATCTG 546
Query 743 ATGATGGAACTTGTTGATACATATAAGTTTCGTCTGCCAAAGTTTACTGTAAAATTTGCT 802
||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 547 ATGATGGAACTTGTTGATACATATAAGTTTCGTCTACCCAAGTTTACTGTGAAATTTGCA 606
Query 803 ATACAGTTTATGCGGAGAGCTATTCAGAAAAAAGCAAAGTTTGATATAATGGAAT-TGAA 861
|||||||| |||||||||||||||| |||||||||||||||||| ||||||| | ||||
Sbjct 607 ATACAGTTCATGCGGAGAGCTATTCTGAAAAAAGCAAAGTTTGACATAATGGC-TCTGAA 665
Query 862 CACCATTAAGGTGGCAAAGGCTAGTTTTGTTCCGGTTTTATTTGGACATGCCTTAGATGA 921
||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 666 CACCATTAAGGTGGCGAAGTCTAGTTTTGTTCCAGTTTTATTTGGACATGCCTTAGATGA 725
Query 922 TGACTTTATCCGCCCTCATCATTCAGATCGTATATATGAAGCTTACGTAGGTGACAAAAA 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 TGACTTTATCCGCCCTCATCATTCAGATCGTATATATGAAGCTTACGTAGGTGACAAAAA 785
Query 982 TATCATCAAATTTCCGGGAGACCACAACTCCCCAAGGCCTCCATTCTATTTTGATTCGAT 1041
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 TATCATCAAGTTTCCGGGAGACCACAACTCCCCAAGGCCTCCATTCTATTTTGATTCGAT 845
Query 1042 CAATATCTTTTTCCATAACGTTCTTCAACCCCCAGAGGTGGTGGGGCCGACATTTTATGA 1101
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 CAATATCTTTTTCCACAACGTTCTTCAACCCCCAGAGGTGGTGGGGCCGACATTTTATGA 905
Query 1102 CCCATTGGATGATTACTTTGCAAATGGCAGTTGGGGAACTATGAATGACACAAATATTCC 1161
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 906 CCCATTGGATGATTACTTTGCAAATGGCAGTTGGGGCACTATGCATGACACAAATATTCC 965
Query 1162 ACAATCCTCTGTACAGAAAAGTTTAGCCGCAGGTAGCATCTCTGAGGCAATTAATGAAGT 1221
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 966 ACAATCCTCAGTACAGAAAAGTTTAGCCGCGGGTAGCATCTCTGAGGCAATTAATGAAGT 1025
Query 1222 CCGCAAGAAACGACCCATGAGTCGCACAGATGTTCCTTCAAATGTCACACTCACATCTAA 1281
||||||||||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 1026 CCGCAAGAAACGACCCATGAGTCGCACAGATGTTCCTTCAAATGTCACA-TC---T--AA 1079
Query 1282 CGGTTCTCCATCAGAAACTAAGGAAAAAGAGAATCCTGATGGCCGTGGCAGTTCATCGTC 1341
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1080 CGGTTCTCCATCAGAATCTAAGGAAAAAGAAAATCCTGATGGCCGTGGCAGTTCATCTTC 1139
Query 1342 TCCTGATATGATAAGCTTTGATTTGTCAGA-CGGCAATCAATACCCTCCTCACCTTAGGA 1400
|||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||
Sbjct 1140 TCCTGATATGATAAGCTTTGATTTGTCA-ATCGGCAATCAACACCCTCCTCACCTTAGGA 1198
Query 1401 TGGCTTTAGATGATGATCAATATGTTGAGTATCAGATGGAGGACATGGCTGATTTCCCAT 1460
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 1199 TGGCTTTAGATGATGATCAATATGTGGAGTATCAGATGGAGGACATGGCAGATTTTCCAT 1258
Query 1461 CTAATGCAGAGGAAGAAGAAAGAATGCTTATGAAAGCGGTGATGGAATCGTTGAAAGACT 1520
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1259 CTAATGCAGAGGAAGAAGAAAGGATGCTTATGAAAGCGGTGATGGAATCGTTGAAAGACT 1318
Query 1521 TGGAAGTGCAAAGTCAACAGAAAAAAGAACCTCCTGAGACGAGAATTCATGGCGGCTCTG 1580
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1319 TGGAAGTGCAAAGTCAACAGAAAAAAGAACCTCCTGAGACGAGAGTTCATGGCAGCTCTG 1378
Query 1581 CTTTTTTAAATGCAGTTCAATGCATTTCATCCAGGGAAGAATCAACTTCAACTCGAGCAA 1640
||||||||| ||||| |||| || |||| |||||||||||||||||||||||||||||||
Sbjct 1379 CTTTTTTAACTGCAGCTCAAAGCCTTTCTTCCAGGGAAGAATCAACTTCAACTCGAGCAA 1438
Query 1641 ATCAATCAGAGACTGATTCTGCTTCCAGTCCAGTAACACGTAGCCAGGATCAACTACCGT 1700
|||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1439 ATCAATCAGAGAGTGATTCTGCTTCCAGTCCAGTAATAGGTAGCCAGGATCAACTACCGT 1498
Query 1701 CATCTTCTGAGTCCAATCCTCCTAGTGAGACCTCGAGTTCTCTGGCGAGAACCGTAACCT 1760
|||||||||||||||||||||| || |||||||| | |||||||||| || || ||| |
Sbjct 1499 CATCTTCTGAGTCCAATCCTCCAAGAGAGACCTCAACTTCTCTGGCGGGACCCATAAACG 1558
Query 1761 CTTCTGTTCCCGGCTCTTTAAGCCAGAAGGAAAGCGAGACTGGTGACGTGCCAGG--T-A 1817
|||||||||||||||||||||||||||||||||||||||| |||||| || |||| | |
Sbjct 1559 CTTCTGTTCCCGGCTCTTTAAGCCAGAAGGAAAGCGAGACCGGTGACATGTCAGGAGTTA 1618
Query 1818 CAAAGGCCACCGTGACAGTGGAACGTAGTAGTAGTGCACCGGGGAAAGTCTTAGACGGGT 1877
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1619 CAAAGGCCACAGTGACAGTGGAACGTAGTAGTAGTGCACCAGGGAAAGTCTTAGACGGGT 1678
Query 1878 TAATACGCAGGTGGGATCTTAACTTTTTCAAAAACAACAAATAA 1921
||||||||| ||||||||| ||||| ||||||||||||||||||
Sbjct 1679 TAATACGCAAGTGGGATCTAAACTTCTTCAAAAACAACAAATAA 1722
> Ahg929406 jgi|Araly1|929406|scaffold_301863.1
Length=463
Score = 427 bits (231), Expect = 1e-118
Identities = 291/317 (92%), Gaps = 16/317 (5%)
Strand=Plus/Plus
Query 257 AGAGCTGAGTATGACCCGGAACATGATCTCTTGGAAAA-GAAGTTTATGATGAAAGGTAG 315
||||||||||||||| |||||||||||||||||||||| | |||||||||||| ||||||
Sbjct 95 AGAGCTGAGTATGACGCGGAACATGATCTCTTGGAAAAGGGAGTTTATGATGAGAGGTAG 154
Query 316 ATGGTATCAGAGAAAAGATTTAGAGGTTAAAAACAGTAGGGGAGATGTTCTCCAGTGTAG 375
||||||||||||||| ||||| | | || | ||||||| ||||||||||||
Sbjct 155 ATGGTATCAGAGAAAGGATTT--A-G--------AG-A--GGAGATG-TCTCCAGTGTAG 199
Query 376 TCATTATATGCCAGTTGAACGCCCTGAAGGAAAGCCTTTACCCTGTGTAATATACTGCCA 435
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 200 TCATTATATGCCAGTTGAACGCCCTGAAGGAAAGCCTTTACCATGTGTAATATACTGTCA 259
Query 436 CGGAAACAGTGGATGTAGAGCGGATGGTAGTGAAGCCGCAATTGTGTTGCTGCCTTCGAA 495
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 260 CGGAAACAGTGGATGTAGAGCGGATGGTAGTGAAGCCGCAATTGTCTTGCTGCCTTCAAA 319
Query 496 CATCACAGTTTTTACCCTTGACTTTTCGGGATCGGGTCTCTCAGGCGGGGAACATGTCAC 555
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 320 CATCACAGTTTTCACCCTTGACTTTTCGGGATCGGGTCTCTCAGGCGGGGAATATGTCAC 379
Query 556 CTTAGGCTGGAACGAAA 572
|||||||||||||||||
Sbjct 380 CTTAGGCTGGAACGAAA 396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72181014275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5