BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G23550.1 Length=1620 Score E Sequences producing significant alignments: (Bits) Value Ahg479864 jgi|Araly1|479864|fgenesh2_kg.3__2565__AT3G23550.1 2237 0.0 Ahg479865 jgi|Araly1|479865|fgenesh2_kg.3__2566__AT3G23560.1 1696 0.0 > Ahg479864 jgi|Araly1|479864|fgenesh2_kg.3__2565__AT3G23550.1 Length=1557 Score = 2237 bits (1211), Expect = 0.0 Identities = 1379/1462 (94%), Gaps = 3/1462 (0%) Strand=Plus/Plus Query 1 GTCTAGCTTCTCCTACTCTTCGCC-AGATCCAAATTCCTTGAAGATACAATGGCTGATCC 59 |||||||||||||||||||| || | ||||||| ||||||||||||||||||||| ||| Sbjct 1 GTCTAGCTTCTCCTACTCTTAACCAAAATCCAAAGTCCTTGAAGATACAATGGCTGCTCC 60 Query 60 CACGTCCAAAGATGACCATGATGGTGAAGGAGGAAGAGACAAATCATCAACTTTTGTTCA 119 |||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||| Sbjct 61 TACGTCCAAAGATGACCATGAAGGTGAAGGAGGAAGAGAAAAATCATCAACTTATGTTCA 120 Query 120 AAAACTTATTGACGTTGAAGAAGCAAAGACTCAAATCATTTACTCTCTACCAATGATATT 179 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ACAACTTATTGACGTTGAAGAAGCAAAGACTCAAATCATTTACTCTCTACCAATGATATT 180 Query 180 CACCAATCTTTTCTATTATTGTATCCCTTTAACCTCTGTGATGTTCGCTTCTCAACTCGG 239 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 181 CACCAATCTTTTCTATTATTGTATCCCTTTAACCTCTGTGATGTTTGCTTCTCACCTCGG 240 Query 240 CCAACTCGAGCTCGCCGGTGCTACCCTAGCCAATTCTTGGGCTACCGTCACCGGTTTTGC 299 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 241 CCAACTCGAGCTCGCCGGTGCTACCCTCGCCAATTCTTGGGCTACCGTCACCGGTTTTGC 300 Query 300 CTTCATGACAGGGTTAAGTGGAGCACTTGAGACATTGTGTGGACAAGGCTTTGGTGCAAA 359 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 301 CTTCATGACAGGGTTAAGTGGAGCACTTGAGACATTATGTGGACAAGGCTTTGGTGCAAA 360 Query 360 AAGCTATAGAATGTTGGGGATTCATCTACAATCATCTTGCATTGTTTCATTAGTCTTCAC 419 ||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||| Sbjct 361 AAGCTATAGGATGTTGGGGATTCATCTTCAATCATCTTGCATCGTCTCATTAGTCTTCAG 420 Query 420 CATTCTCATCACCATCTTATGGTTCTTCACGGAATCGGTTTTCTTACTTCTTAGACAAGA 479 ||| |||| ||||||||||||||||||||| |||||| ||||| |||||| |||||||| Sbjct 421 CATCCTCACCACCATCTTATGGTTCTTCACAGAATCGATTTTCGGACTTCTCAGACAAGA 480 Query 480 TCCTAGCATCTCAAAACAAGCTGCACTCTACATGAAGTACCTAGCTCCCGGTTTACTCGC 539 |||||||||||||||||||||||||||||| |||||||||||||||||||||||| | || Sbjct 481 TCCTAGCATCTCAAAACAAGCTGCACTCTATATGAAGTACCTAGCTCCCGGTTTATTTGC 540 Query 540 TTACGGGTTCTTACAAAACATTTTGAGATTTTGCCAAACACAAT-GCATCGTTACTCCGC 598 ||| |||||||||||||||||||||||||||||||||||||||| | ||| ||||||| | Sbjct 541 TTATGGGTTCTTACAAAACATTTTGAGATTTTGCCAAACACAATCG-ATCATTACTCCAC 599 Query 599 TAGTTTTATTCTCGTTTCTTCCCTTGGTGATTAATATCGGTACTACATATGCTCTGGTGC 658 |||| | ||||||||| ||||||||||||| |||||||||||||| ||||||||||||| Sbjct 600 TAGTCATCTTCTCGTTTGTTCCCTTGGTGATAAATATCGGTACTACGTATGCTCTGGTGC 659 Query 659 ATTTAGCTGGGCTTGGATTCATCGGTGCTCCAATAGCTACATCTATTTCATTGTGGATAG 718 |||||||||| || |||||||| || ||||| |||||||||||||||||| ||||||||| Sbjct 660 ATTTAGCTGGCCTCGGATTCATTGGAGCTCCCATAGCTACATCTATTTCAATGTGGATAG 719 Query 719 CTTTCGTTTCTCTCGGGTTTTATGTGATTTGTTCGGACAAGTTTAAGGAAACATGGACCG 778 |||||||||||||||| |||| |||||||| || ||||||||||||||||||||||||| Sbjct 720 CTTTCGTTTCTCTCGGAATTTACGTGATTTGGTCAGACAAGTTTAAGGAAACATGGACCG 779 Query 779 GATTTTCGATGGAATCATTTCATCATGTAGTACTAAACTTGACATTAAGCATCCCTTCTG 838 ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 780 GATTTTCGATGGAATCATTTCGTTATGTAGTACTAAACTTGACATTAAGCATCCCTTCTG 839 Query 839 CTGCTATGGTATGTTTGGAATATTGGGCGTTCGAGATTCTAGTGTTCTTAGCAGGATTGA 898 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| | | Sbjct 840 CTGCTATGGTATGTTTGGAATATTGGGCGTTCGAGATTCTAGTATTCTTGGCAGGACTCA 899 Query 899 TGCGAAATCCGGAAATCACCACTTCTTTGGTAGCTATATGCGTCAACACGGAATCAATAA 958 ||| |||||||||||||||||| |||||||||||||||||||||||||| ||||| || | Sbjct 900 TGCCAAATCCGGAAATCACCACCTCTTTGGTAGCTATATGCGTCAACACCGAATCGATTA 959 Query 959 GTTACATGTTAACATGCGGACTTAGTGCAGCTACAAGTACGCGTGTGTCCAACGAACTTG 1018 | ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||| Sbjct 960 GCTACATGTTAACATGCGGACTTAGCGCAGCTACAAGTACTCGTGTGTCGAACGAACTTG 1019 Query 1019 GAGCAGGAAATGTAAAAGGCGCAAAGAAGGCGACTTCGGTCTCCGTTAAGTTGTCTTTAG 1078 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1020 GAGCAGGAAATGTAAAAGGCGCAAAGAAGGCGACTTCGGTGTCCGTTAAGTTGTCTTTAG 1079 Query 1079 TTCTAGCTCTCGGTGTAGTCATTGCTATACTTGTAGGTCATGATGCCTGGGTTGGTTTAT 1138 ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 1080 TTCTAGCTCTCGGTGTAGTGATTGCTATACTTGTAGGTCATGATGCTTGGGTTGGTTTAT 1139 Query 1139 TCAGCAATAGCCATGTGATTAAAGAGGGATTTGCATCACTAAGGTTTTTCCTTGCTGCAT 1198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 TCAGCAATAGCCATGTGATTAAAGAGGGATTTGCATCACTAAGGTTTTTCCTTGCTGCAT 1199 Query 1199 CTATAACACTTGATTCAATCCAAGGTGTTTTATCAGGAGTTGCGAGAGGATGCGGATGGC 1258 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1200 CTATAACACTTGATTCCATCCAAGGTGTTTTATCAGGAGTTGCGAGAGGATGTGGATGGC 1259 Query 1259 AGCGGTTAGCCACGGTTATAAATTTGGGAACATTCTACTTAATCGGAATGCCTATTTCAG 1318 ||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||| Sbjct 1260 AGCGGTTAGCCACGGTTATAAATTTGGGAACATTCTATTTAATTGGAATGCCGATTTCAG 1319 Query 1319 TCCTTTGTGGTTTCAAGTTGAAGCTTCATGCCAAGGGTTTATGGATCGGTCTGATATGTG 1378 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1320 TCCTTTGTGGTTTCAAGTTGAAGCTTCATGCCAAGGGTTTGTGGATCGGTCTGATATGTG 1379 Query 1379 GGATGTTTTGCCAGTCCGCATCTCTTTTGCTTATGACAATTTTCCGGAAGTGGACAAAGC 1438 ||||||||||||| ||| | |||||| ||||||||||||||||||||||||||| ||||| Sbjct 1380 GGATGTTTTGCCAATCCTCGTCTCTTCTGCTTATGACAATTTTCCGGAAGTGGATAAAGC 1439 Query 1439 TGACTGCTGCCACTGTCTGAAA 1460 ||| |||||| ||||||||||| Sbjct 1440 TGAATGCTGCTACTGTCTGAAA 1461 > Ahg479865 jgi|Araly1|479865|fgenesh2_kg.3__2566__AT3G23560.1 Length=1629 Score = 1696 bits (918), Expect = 0.0 Identities = 1235/1391 (89%), Gaps = 10/1391 (1%) Strand=Plus/Plus Query 84 TGAAGGAGGAA-GAGACAAATCATCAACTTTTGTTCAAAAACTTATTGACGTTGAAGAAG 142 |||| |||||| |||| |||||||||||| |||||||| || || ||||| ||||||| Sbjct 151 TGAAAGAGGAAGGAGA-GGATCATCAACTTTGGTTCAAAAGCTAATCGACGTGGAAGAAG 209 Query 143 C-AAAGACTCAAATCATTTACTCTCTACCAATGATATTCACCAATCTTTTCTATTATTGT 201 | |||| ||||||| ||||||||| | ||||||||| |||||||| ||||||| || ||| Sbjct 210 CTAAAG-CTCAAATGATTTACTCTTTGCCAATGATACTCACCAATGTTTTCTACTACTGT 268 Query 202 ATCCCTTTAACCTCTGTGATGTTCGCTTCTCAACTCGGCCAACTCGAGCTCGCCGGTGCT 261 |||||| |||| ||||||||||| |||||||| ||||| |||||||||||||||| ||| Sbjct 269 ATCCCTATAACTTCTGTGATGTTTGCTTCTCACCTCGGTCAACTCGAGCTCGCCGCTGCC 328 Query 262 ACCCTAGCCAATTCTTGGGCTACCGTCACCGGTTTTGCCTTCATGACAGGGTTAAGTGGA 321 || || |||||||||||||| |||||| ||||||||||||||||| ||||||||||||| Sbjct 329 ACTCTTGCCAATTCTTGGGCCACCGTCTCCGGTTTTGCCTTCATGGTAGGGTTAAGTGGA 388 Query 322 GCACTTGAGACATTGTGTGGACAAGGCTTTGGTGCAAAAAGCTATAGAATGTTGGGGATT 381 ||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||| || Sbjct 389 TCACTTGAGACATTATGTGGACAAGGCTTTGGTGCAAAAAACTATAGGATGTTGGGGGTT 448 Query 382 CATCTACAATCATCTTGCATTGTTTCATTAGTCTTCACCATTCTCATCACCATCTTATGG 441 |||||||||||||||||||| || ||||||||||||| ||| |||||||||||||| ||| Sbjct 449 CATCTACAATCATCTTGCATAGTCTCATTAGTCTTCAGCATCCTCATCACCATCTTCTGG 508 Query 442 TTCTTCACGGAATCGGTTTTCTTACTTCTTAGACAAGATCCTAGCATCTCAAAACAAGCT 501 |||||||| |||||| ||||| |||||| ||||||||||||||||| |||||||||||| Sbjct 509 TTCTTCACAGAATCGATTTTCGGACTTCTCAGACAAGATCCTAGCATTTCAAAACAAGCT 568 Query 502 GCACTCTACATGAAGTACCTAGCTCCCGGTTTACTCGCTTACGGGTTCTTACAAAACATT 561 |||||||| |||||||||| ||||||||||||||||||||||||||||||||| || || Sbjct 569 GCACTCTATATGAAGTACCAAGCTCCCGGTTTACTCGCTTACGGGTTCTTACAGAATATC 628 Query 562 TTGAGATTTTGCCAAACACAATGC-ATCGTTACTCCGCTAGTTTTATTCTCGTTTCTTCC 620 |||||||||||||||||||||| | ||| ||||||| ||||| || ||||||||| |||| Sbjct 629 TTGAGATTTTGCCAAACACAAT-CGATCATTACTCCACTAGTATTCTTCTCGTTTGTTCC 687 Query 621 CTTGGTGATTAATATCGGTACTACATATGCTCTGGTGCATTTAGCTGGGCTTGGATTCAT 680 ||||||||| ||||||||||| |||||| ||| || ||||| |||| || |||||||| Sbjct 688 CTTGGTGATAAATATCGGTACCGCATATGTTCTTGTTTATTTATCTGGCCTCGGATTCAT 747 Query 681 CGGTGCTCCAATAGCTACATCTATTTCATTGTGGATAGCTTTCGTTTCTCTCGGGTTTTA 740 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 748 TGGTGCTCCAATAGCTACATCTATTTCATTGTGGATAGCTTTCCTTTCTCTCGGGACTTA 807 Query 741 TGTGATTTGTTCGGACAAGTTTAAGGAAACATGGACCGGATTTTCGATGGAATCATTTCA 800 |||||| ||||| || |||||||| ||||||||||| ||||||||| |||||||||| | Sbjct 808 TGTGATCTGTTCAGAAAAGTTTAAAGAAACATGGACTGGATTTTCGTTGGAATCATTCCG 867 Query 801 TCATGTAGTACTAAACTTGACATTAAGCATCCCTTCTGCTGCTATGGTATGTTTGGAATA 860 | || | ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 868 TTATATCGTAATAAACTTGACATTAAGCATCCCTTCTGCTGCTATGGTATGTTTGGAATA 927 Query 861 TTGGGCGTTCGAGATTCTAGTGTTCTTAGCAGGATTGATGCGAAATCCGGAAATCACCAC 920 |||||| ||||||||||| |||||||| |||||| |||||| ||| |||||||||| || Sbjct 928 TTGGGCATTCGAGATTCTTGTGTTCTTGGCAGGAGTGATGCCAAACCCGGAAATCAATAC 987 Query 921 TTCTTTGGTAGCTATATGCGTCAACACGGAATCAATAAGTTACATGTTAACATGCGGACT 980 ||||||||| |||||||||||||||||||| | || || ||||||||||||| |||||| Sbjct 988 TTCTTTGGTTGCTATATGCGTCAACACGGAGGCGATTAGCTACATGTTAACATACGGACT 1047 Query 981 TAGTGCAGCTACAAGTACGCGTGTGTCCAACGAACTTGGAGCAGGAAATGTAAAAGGCGC 1040 ||| |||||| |||||||||||||||| |||||||||||||| |||||||||| |||||| Sbjct 1048 TAGCGCAGCTGCAAGTACGCGTGTGTCGAACGAACTTGGAGCTGGAAATGTAACAGGCGC 1107 Query 1041 AAAGAAGGCGACTTCGGTCTCCGTTAAGTTGTCTTTAGTTCTAGCTCTCGGTGTAGTCAT 1100 |||||||||||| || || ||||| ||||||||||||||||| |||||||| || || || Sbjct 1108 AAAGAAGGCGACCTCAGTGTCCGTAAAGTTGTCTTTAGTTCTTGCTCTCGGCGTTGTAAT 1167 Query 1101 TGCTATACTTGTAGGTCATGATGCCTGGGTTGGTTTATTCAGCAATAGCCATGTGATTAA 1160 || | |||||||||||||||||| |||||||| ||||| || |||| ||||||||||| Sbjct 1168 TGTTTTACTTGTAGGTCATGATGGTTGGGTTGGGTTATTTAGTGATAGTCATGTGATTAA 1227 Query 1161 AGAGG-GATTTGCATCACTAAGGTTTTTCCTTGCTGCATCTATAACACTTGATTCAATCC 1219 ||||| | ||||||||| | |||||||| ||||||||||||||||| ||||||||||||| Sbjct 1228 AGAGGAG-TTTGCATCATTGAGGTTTTTTCTTGCTGCATCTATAACTCTTGATTCAATCC 1286 Query 1220 AAGGTGTTTTATCAGGAGTTGCGAGAGGATGCGGATGGCAGCGGTTAGCCACGGTTATAA 1279 |||| ||||||||||||||||| |||||||||||||||||||| |||| ||||||||||| Sbjct 1287 AAGGAGTTTTATCAGGAGTTGCTAGAGGATGCGGATGGCAGCGTTTAGTCACGGTTATAA 1346 Query 1280 ATTTGGGAACATTCTACTTAATCGGAATGCCTATTTCAGTCCTTT-GTGGTTTCAAGTTG 1338 |||||| ||||||||||||||| |||||||| || ||| ||||| |||||||||||||| Sbjct 1347 ATTTGGCAACATTCTACTTAATAGGAATGCCGATCGCAG-CCTTTTGTGGTTTCAAGTTG 1405 Query 1339 AAGCTTCATGCCAAGGGTTTATGGATCGGTCTGATATGTGGGATGTTTTGCCAGTCCGCA 1398 ||| || ||||||||||||||||||| ||||| || |||||||| |||||||| || || Sbjct 1406 AAGTTTTATGCCAAGGGTTTATGGATTGGTCTCATTTGTGGGATATTTTGCCAATCTTCA 1465 Query 1399 TCTCTTTTGCTTATGACAATTTTCCGGAAGTGGACAAAGCTGACTGCTGCCACTGTCTGA 1458 |||||||||||||||||||| |||||||||||||||||||| | |||||| || |||||| Sbjct 1466 TCTCTTTTGCTTATGACAATCTTCCGGAAGTGGACAAAGCTTAATGCTGCTACGGTCTGA 1525 Query 1459 AACCTATAGTT 1469 || || ||||| Sbjct 1526 AAACTCTAGTT 1536 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60715850530 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5