BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23550.1
Length=1620
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479864 jgi|Araly1|479864|fgenesh2_kg.3__2565__AT3G23550.1 2237 0.0
Ahg479865 jgi|Araly1|479865|fgenesh2_kg.3__2566__AT3G23560.1 1696 0.0
> Ahg479864 jgi|Araly1|479864|fgenesh2_kg.3__2565__AT3G23550.1
Length=1557
Score = 2237 bits (1211), Expect = 0.0
Identities = 1379/1462 (94%), Gaps = 3/1462 (0%)
Strand=Plus/Plus
Query 1 GTCTAGCTTCTCCTACTCTTCGCC-AGATCCAAATTCCTTGAAGATACAATGGCTGATCC 59
|||||||||||||||||||| || | ||||||| ||||||||||||||||||||| |||
Sbjct 1 GTCTAGCTTCTCCTACTCTTAACCAAAATCCAAAGTCCTTGAAGATACAATGGCTGCTCC 60
Query 60 CACGTCCAAAGATGACCATGATGGTGAAGGAGGAAGAGACAAATCATCAACTTTTGTTCA 119
|||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||
Sbjct 61 TACGTCCAAAGATGACCATGAAGGTGAAGGAGGAAGAGAAAAATCATCAACTTATGTTCA 120
Query 120 AAAACTTATTGACGTTGAAGAAGCAAAGACTCAAATCATTTACTCTCTACCAATGATATT 179
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACAACTTATTGACGTTGAAGAAGCAAAGACTCAAATCATTTACTCTCTACCAATGATATT 180
Query 180 CACCAATCTTTTCTATTATTGTATCCCTTTAACCTCTGTGATGTTCGCTTCTCAACTCGG 239
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 181 CACCAATCTTTTCTATTATTGTATCCCTTTAACCTCTGTGATGTTTGCTTCTCACCTCGG 240
Query 240 CCAACTCGAGCTCGCCGGTGCTACCCTAGCCAATTCTTGGGCTACCGTCACCGGTTTTGC 299
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 CCAACTCGAGCTCGCCGGTGCTACCCTCGCCAATTCTTGGGCTACCGTCACCGGTTTTGC 300
Query 300 CTTCATGACAGGGTTAAGTGGAGCACTTGAGACATTGTGTGGACAAGGCTTTGGTGCAAA 359
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 CTTCATGACAGGGTTAAGTGGAGCACTTGAGACATTATGTGGACAAGGCTTTGGTGCAAA 360
Query 360 AAGCTATAGAATGTTGGGGATTCATCTACAATCATCTTGCATTGTTTCATTAGTCTTCAC 419
||||||||| ||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 361 AAGCTATAGGATGTTGGGGATTCATCTTCAATCATCTTGCATCGTCTCATTAGTCTTCAG 420
Query 420 CATTCTCATCACCATCTTATGGTTCTTCACGGAATCGGTTTTCTTACTTCTTAGACAAGA 479
||| |||| ||||||||||||||||||||| |||||| ||||| |||||| ||||||||
Sbjct 421 CATCCTCACCACCATCTTATGGTTCTTCACAGAATCGATTTTCGGACTTCTCAGACAAGA 480
Query 480 TCCTAGCATCTCAAAACAAGCTGCACTCTACATGAAGTACCTAGCTCCCGGTTTACTCGC 539
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||
Sbjct 481 TCCTAGCATCTCAAAACAAGCTGCACTCTATATGAAGTACCTAGCTCCCGGTTTATTTGC 540
Query 540 TTACGGGTTCTTACAAAACATTTTGAGATTTTGCCAAACACAAT-GCATCGTTACTCCGC 598
||| |||||||||||||||||||||||||||||||||||||||| | ||| ||||||| |
Sbjct 541 TTATGGGTTCTTACAAAACATTTTGAGATTTTGCCAAACACAATCG-ATCATTACTCCAC 599
Query 599 TAGTTTTATTCTCGTTTCTTCCCTTGGTGATTAATATCGGTACTACATATGCTCTGGTGC 658
|||| | ||||||||| ||||||||||||| |||||||||||||| |||||||||||||
Sbjct 600 TAGTCATCTTCTCGTTTGTTCCCTTGGTGATAAATATCGGTACTACGTATGCTCTGGTGC 659
Query 659 ATTTAGCTGGGCTTGGATTCATCGGTGCTCCAATAGCTACATCTATTTCATTGTGGATAG 718
|||||||||| || |||||||| || ||||| |||||||||||||||||| |||||||||
Sbjct 660 ATTTAGCTGGCCTCGGATTCATTGGAGCTCCCATAGCTACATCTATTTCAATGTGGATAG 719
Query 719 CTTTCGTTTCTCTCGGGTTTTATGTGATTTGTTCGGACAAGTTTAAGGAAACATGGACCG 778
|||||||||||||||| |||| |||||||| || |||||||||||||||||||||||||
Sbjct 720 CTTTCGTTTCTCTCGGAATTTACGTGATTTGGTCAGACAAGTTTAAGGAAACATGGACCG 779
Query 779 GATTTTCGATGGAATCATTTCATCATGTAGTACTAAACTTGACATTAAGCATCCCTTCTG 838
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 780 GATTTTCGATGGAATCATTTCGTTATGTAGTACTAAACTTGACATTAAGCATCCCTTCTG 839
Query 839 CTGCTATGGTATGTTTGGAATATTGGGCGTTCGAGATTCTAGTGTTCTTAGCAGGATTGA 898
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| | |
Sbjct 840 CTGCTATGGTATGTTTGGAATATTGGGCGTTCGAGATTCTAGTATTCTTGGCAGGACTCA 899
Query 899 TGCGAAATCCGGAAATCACCACTTCTTTGGTAGCTATATGCGTCAACACGGAATCAATAA 958
||| |||||||||||||||||| |||||||||||||||||||||||||| ||||| || |
Sbjct 900 TGCCAAATCCGGAAATCACCACCTCTTTGGTAGCTATATGCGTCAACACCGAATCGATTA 959
Query 959 GTTACATGTTAACATGCGGACTTAGTGCAGCTACAAGTACGCGTGTGTCCAACGAACTTG 1018
| ||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct 960 GCTACATGTTAACATGCGGACTTAGCGCAGCTACAAGTACTCGTGTGTCGAACGAACTTG 1019
Query 1019 GAGCAGGAAATGTAAAAGGCGCAAAGAAGGCGACTTCGGTCTCCGTTAAGTTGTCTTTAG 1078
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1020 GAGCAGGAAATGTAAAAGGCGCAAAGAAGGCGACTTCGGTGTCCGTTAAGTTGTCTTTAG 1079
Query 1079 TTCTAGCTCTCGGTGTAGTCATTGCTATACTTGTAGGTCATGATGCCTGGGTTGGTTTAT 1138
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1080 TTCTAGCTCTCGGTGTAGTGATTGCTATACTTGTAGGTCATGATGCTTGGGTTGGTTTAT 1139
Query 1139 TCAGCAATAGCCATGTGATTAAAGAGGGATTTGCATCACTAAGGTTTTTCCTTGCTGCAT 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TCAGCAATAGCCATGTGATTAAAGAGGGATTTGCATCACTAAGGTTTTTCCTTGCTGCAT 1199
Query 1199 CTATAACACTTGATTCAATCCAAGGTGTTTTATCAGGAGTTGCGAGAGGATGCGGATGGC 1258
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1200 CTATAACACTTGATTCCATCCAAGGTGTTTTATCAGGAGTTGCGAGAGGATGTGGATGGC 1259
Query 1259 AGCGGTTAGCCACGGTTATAAATTTGGGAACATTCTACTTAATCGGAATGCCTATTTCAG 1318
||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 1260 AGCGGTTAGCCACGGTTATAAATTTGGGAACATTCTATTTAATTGGAATGCCGATTTCAG 1319
Query 1319 TCCTTTGTGGTTTCAAGTTGAAGCTTCATGCCAAGGGTTTATGGATCGGTCTGATATGTG 1378
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1320 TCCTTTGTGGTTTCAAGTTGAAGCTTCATGCCAAGGGTTTGTGGATCGGTCTGATATGTG 1379
Query 1379 GGATGTTTTGCCAGTCCGCATCTCTTTTGCTTATGACAATTTTCCGGAAGTGGACAAAGC 1438
||||||||||||| ||| | |||||| ||||||||||||||||||||||||||| |||||
Sbjct 1380 GGATGTTTTGCCAATCCTCGTCTCTTCTGCTTATGACAATTTTCCGGAAGTGGATAAAGC 1439
Query 1439 TGACTGCTGCCACTGTCTGAAA 1460
||| |||||| |||||||||||
Sbjct 1440 TGAATGCTGCTACTGTCTGAAA 1461
> Ahg479865 jgi|Araly1|479865|fgenesh2_kg.3__2566__AT3G23560.1
Length=1629
Score = 1696 bits (918), Expect = 0.0
Identities = 1235/1391 (89%), Gaps = 10/1391 (1%)
Strand=Plus/Plus
Query 84 TGAAGGAGGAA-GAGACAAATCATCAACTTTTGTTCAAAAACTTATTGACGTTGAAGAAG 142
|||| |||||| |||| |||||||||||| |||||||| || || ||||| |||||||
Sbjct 151 TGAAAGAGGAAGGAGA-GGATCATCAACTTTGGTTCAAAAGCTAATCGACGTGGAAGAAG 209
Query 143 C-AAAGACTCAAATCATTTACTCTCTACCAATGATATTCACCAATCTTTTCTATTATTGT 201
| |||| ||||||| ||||||||| | ||||||||| |||||||| ||||||| || |||
Sbjct 210 CTAAAG-CTCAAATGATTTACTCTTTGCCAATGATACTCACCAATGTTTTCTACTACTGT 268
Query 202 ATCCCTTTAACCTCTGTGATGTTCGCTTCTCAACTCGGCCAACTCGAGCTCGCCGGTGCT 261
|||||| |||| ||||||||||| |||||||| ||||| |||||||||||||||| |||
Sbjct 269 ATCCCTATAACTTCTGTGATGTTTGCTTCTCACCTCGGTCAACTCGAGCTCGCCGCTGCC 328
Query 262 ACCCTAGCCAATTCTTGGGCTACCGTCACCGGTTTTGCCTTCATGACAGGGTTAAGTGGA 321
|| || |||||||||||||| |||||| ||||||||||||||||| |||||||||||||
Sbjct 329 ACTCTTGCCAATTCTTGGGCCACCGTCTCCGGTTTTGCCTTCATGGTAGGGTTAAGTGGA 388
Query 322 GCACTTGAGACATTGTGTGGACAAGGCTTTGGTGCAAAAAGCTATAGAATGTTGGGGATT 381
||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||| ||
Sbjct 389 TCACTTGAGACATTATGTGGACAAGGCTTTGGTGCAAAAAACTATAGGATGTTGGGGGTT 448
Query 382 CATCTACAATCATCTTGCATTGTTTCATTAGTCTTCACCATTCTCATCACCATCTTATGG 441
|||||||||||||||||||| || ||||||||||||| ||| |||||||||||||| |||
Sbjct 449 CATCTACAATCATCTTGCATAGTCTCATTAGTCTTCAGCATCCTCATCACCATCTTCTGG 508
Query 442 TTCTTCACGGAATCGGTTTTCTTACTTCTTAGACAAGATCCTAGCATCTCAAAACAAGCT 501
|||||||| |||||| ||||| |||||| ||||||||||||||||| ||||||||||||
Sbjct 509 TTCTTCACAGAATCGATTTTCGGACTTCTCAGACAAGATCCTAGCATTTCAAAACAAGCT 568
Query 502 GCACTCTACATGAAGTACCTAGCTCCCGGTTTACTCGCTTACGGGTTCTTACAAAACATT 561
|||||||| |||||||||| ||||||||||||||||||||||||||||||||| || ||
Sbjct 569 GCACTCTATATGAAGTACCAAGCTCCCGGTTTACTCGCTTACGGGTTCTTACAGAATATC 628
Query 562 TTGAGATTTTGCCAAACACAATGC-ATCGTTACTCCGCTAGTTTTATTCTCGTTTCTTCC 620
|||||||||||||||||||||| | ||| ||||||| ||||| || ||||||||| ||||
Sbjct 629 TTGAGATTTTGCCAAACACAAT-CGATCATTACTCCACTAGTATTCTTCTCGTTTGTTCC 687
Query 621 CTTGGTGATTAATATCGGTACTACATATGCTCTGGTGCATTTAGCTGGGCTTGGATTCAT 680
||||||||| ||||||||||| |||||| ||| || ||||| |||| || ||||||||
Sbjct 688 CTTGGTGATAAATATCGGTACCGCATATGTTCTTGTTTATTTATCTGGCCTCGGATTCAT 747
Query 681 CGGTGCTCCAATAGCTACATCTATTTCATTGTGGATAGCTTTCGTTTCTCTCGGGTTTTA 740
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 748 TGGTGCTCCAATAGCTACATCTATTTCATTGTGGATAGCTTTCCTTTCTCTCGGGACTTA 807
Query 741 TGTGATTTGTTCGGACAAGTTTAAGGAAACATGGACCGGATTTTCGATGGAATCATTTCA 800
|||||| ||||| || |||||||| ||||||||||| ||||||||| |||||||||| |
Sbjct 808 TGTGATCTGTTCAGAAAAGTTTAAAGAAACATGGACTGGATTTTCGTTGGAATCATTCCG 867
Query 801 TCATGTAGTACTAAACTTGACATTAAGCATCCCTTCTGCTGCTATGGTATGTTTGGAATA 860
| || | ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 TTATATCGTAATAAACTTGACATTAAGCATCCCTTCTGCTGCTATGGTATGTTTGGAATA 927
Query 861 TTGGGCGTTCGAGATTCTAGTGTTCTTAGCAGGATTGATGCGAAATCCGGAAATCACCAC 920
|||||| ||||||||||| |||||||| |||||| |||||| ||| |||||||||| ||
Sbjct 928 TTGGGCATTCGAGATTCTTGTGTTCTTGGCAGGAGTGATGCCAAACCCGGAAATCAATAC 987
Query 921 TTCTTTGGTAGCTATATGCGTCAACACGGAATCAATAAGTTACATGTTAACATGCGGACT 980
||||||||| |||||||||||||||||||| | || || ||||||||||||| ||||||
Sbjct 988 TTCTTTGGTTGCTATATGCGTCAACACGGAGGCGATTAGCTACATGTTAACATACGGACT 1047
Query 981 TAGTGCAGCTACAAGTACGCGTGTGTCCAACGAACTTGGAGCAGGAAATGTAAAAGGCGC 1040
||| |||||| |||||||||||||||| |||||||||||||| |||||||||| ||||||
Sbjct 1048 TAGCGCAGCTGCAAGTACGCGTGTGTCGAACGAACTTGGAGCTGGAAATGTAACAGGCGC 1107
Query 1041 AAAGAAGGCGACTTCGGTCTCCGTTAAGTTGTCTTTAGTTCTAGCTCTCGGTGTAGTCAT 1100
|||||||||||| || || ||||| ||||||||||||||||| |||||||| || || ||
Sbjct 1108 AAAGAAGGCGACCTCAGTGTCCGTAAAGTTGTCTTTAGTTCTTGCTCTCGGCGTTGTAAT 1167
Query 1101 TGCTATACTTGTAGGTCATGATGCCTGGGTTGGTTTATTCAGCAATAGCCATGTGATTAA 1160
|| | |||||||||||||||||| |||||||| ||||| || |||| |||||||||||
Sbjct 1168 TGTTTTACTTGTAGGTCATGATGGTTGGGTTGGGTTATTTAGTGATAGTCATGTGATTAA 1227
Query 1161 AGAGG-GATTTGCATCACTAAGGTTTTTCCTTGCTGCATCTATAACACTTGATTCAATCC 1219
||||| | ||||||||| | |||||||| ||||||||||||||||| |||||||||||||
Sbjct 1228 AGAGGAG-TTTGCATCATTGAGGTTTTTTCTTGCTGCATCTATAACTCTTGATTCAATCC 1286
Query 1220 AAGGTGTTTTATCAGGAGTTGCGAGAGGATGCGGATGGCAGCGGTTAGCCACGGTTATAA 1279
|||| ||||||||||||||||| |||||||||||||||||||| |||| |||||||||||
Sbjct 1287 AAGGAGTTTTATCAGGAGTTGCTAGAGGATGCGGATGGCAGCGTTTAGTCACGGTTATAA 1346
Query 1280 ATTTGGGAACATTCTACTTAATCGGAATGCCTATTTCAGTCCTTT-GTGGTTTCAAGTTG 1338
|||||| ||||||||||||||| |||||||| || ||| ||||| ||||||||||||||
Sbjct 1347 ATTTGGCAACATTCTACTTAATAGGAATGCCGATCGCAG-CCTTTTGTGGTTTCAAGTTG 1405
Query 1339 AAGCTTCATGCCAAGGGTTTATGGATCGGTCTGATATGTGGGATGTTTTGCCAGTCCGCA 1398
||| || ||||||||||||||||||| ||||| || |||||||| |||||||| || ||
Sbjct 1406 AAGTTTTATGCCAAGGGTTTATGGATTGGTCTCATTTGTGGGATATTTTGCCAATCTTCA 1465
Query 1399 TCTCTTTTGCTTATGACAATTTTCCGGAAGTGGACAAAGCTGACTGCTGCCACTGTCTGA 1458
|||||||||||||||||||| |||||||||||||||||||| | |||||| || ||||||
Sbjct 1466 TCTCTTTTGCTTATGACAATCTTCCGGAAGTGGACAAAGCTTAATGCTGCTACGGTCTGA 1525
Query 1459 AACCTATAGTT 1469
|| || |||||
Sbjct 1526 AAACTCTAGTT 1536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60715850530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5