BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23560.1
Length=1772
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479865 jgi|Araly1|479865|fgenesh2_kg.3__2566__AT3G23560.1 2567 0.0
Ahg479864 jgi|Araly1|479864|fgenesh2_kg.3__2565__AT3G23550.1 1729 0.0
> Ahg479865 jgi|Araly1|479865|fgenesh2_kg.3__2566__AT3G23560.1
Length=1629
Score = 2567 bits (1390), Expect = 0.0
Identities = 1557/1636 (95%), Gaps = 18/1636 (1%)
Strand=Plus/Plus
Query 1 CGTACATCTCTTATTTAATTCCTCACCTTGCCAAATCACAATTCTCCTCTTCAAGTCTTA 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 CGTACATCTCTTATTTAATTCCTCACCTTGCCAAATCACAATTCCCCTCTTCAAGTCTTA 60
Query 61 ACCAAACCCAAAGTCCTT-CAACAAGAAAATCCAATGGCTGATCCGGCAACGAGTTCTCC 119
|||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||
Sbjct 61 ACCAAACCCAAAGTCCTTCCAACAAGAAGATCCAATGGCTGATCCGGCGACGAGTTCTCC 120
Query 120 GTTGTTGGATGACCATGTAGGTGGAGAAGATGAAAGAGGAAGGAGATCAAGATCATCAAC 179
|||||||| | |||||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct 121 GTTGTTGGTTAACCATGAAGGTGGAGAAGATGAAAGAGGAAGGAG---AGGATCATCAAC 177
Query 180 TTTGGTTCAAAAAG-TGATCGACGTGGAAGAAGCAAAAGCTCAAATGATTTACTCTTTGC 238
|||||||| ||||| | ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 178 TTTGGTTC-AAAAGCTAATCGACGTGGAAGAAGCTAAAGCTCAAATGATTTACTCTTTGC 236
Query 239 CAATGATACTCACCAATGTTTTCTACTACTGTATTCCTATAACTTCTGTGATGTTTGCTT 298
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 237 CAATGATACTCACCAATGTTTTCTACTACTGTATCCCTATAACTTCTGTGATGTTTGCTT 296
Query 299 CTCACCTCGGTCAACTCGAGCTCGCCGGTGCCACCCTTGCCAATTCTTGGGCCACCGTCT 358
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 297 CTCACCTCGGTCAACTCGAGCTCGCCGCTGCCACTCTTGCCAATTCTTGGGCCACCGTCT 356
Query 359 CCGGTTTTGCCTTCATGGTAGGGTTAAGTGGATCACTTGAGACATTATGTGGACAAGGCT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CCGGTTTTGCCTTCATGGTAGGGTTAAGTGGATCACTTGAGACATTATGTGGACAAGGCT 416
Query 419 TTGGTGCAAAAAGA-TACAGGATGTTGGGAGTTCATCTACAATCATCTTGCATCGTTTCA 477
|||||||||||| | || ||||||||||| ||||||||||||||||||||||| || |||
Sbjct 417 TTGGTGCAAAAA-ACTATAGGATGTTGGGGGTTCATCTACAATCATCTTGCATAGTCTCA 475
Query 478 TTAGTTTTCAGCATCCTCATCACCATCTTCTGGTTCTTCACAGAATCGATTTTTGGACTT 537
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 476 TTAGTCTTCAGCATCCTCATCACCATCTTCTGGTTCTTCACAGAATCGATTTTCGGACTT 535
Query 538 CTCAGACAAGATCCTAGCATTTCAAAACAAGCTGCACTCTATATGAAGTACCAAGCTCCC 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CTCAGACAAGATCCTAGCATTTCAAAACAAGCTGCACTCTATATGAAGTACCAAGCTCCC 595
Query 598 GGTTTACTAGCTTACGGGTTTTTACAAAATATTTTGAGATTTTGCCAAACACAATCGATC 657
|||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 596 GGTTTACTCGCTTACGGGTTCTTACAGAATATCTTGAGATTTTGCCAAACACAATCGATC 655
Query 658 ATTGCTCCACTAGTCA-TCTTCTCGTTTGTTCCCTTGGTGATAAACATTGCTACCGCATA 716
||| |||||||||| | |||||||||||||||||||||||||||| || | |||||||||
Sbjct 656 ATTACTCCACTAGT-ATTCTTCTCGTTTGTTCCCTTGGTGATAAATATCGGTACCGCATA 714
Query 717 TGTTCTTGTTTATGTAGCTGGGCTTGGATTCATTGGTGCTCCAATAGCTACATCTATTTC 776
||||||||||||| || |||| || |||||||||||||||||||||||||||||||||||
Sbjct 715 TGTTCTTGTTTATTTATCTGGCCTCGGATTCATTGGTGCTCCAATAGCTACATCTATTTC 774
Query 777 ATTGTGGATAGCTTTCCTTTCGCTTGGAACTTATGTGATGTGTTCAGAAAAGTTTAAGGA 836
||||||||||||||||||||| || || ||||||||||| ||||||||||||||||| ||
Sbjct 775 ATTGTGGATAGCTTTCCTTTCTCTCGGGACTTATGTGATCTGTTCAGAAAAGTTTAAAGA 834
Query 837 AACATGGACTGGATTTTCGTTGGAATCATTCCGTTATATCGTAATAAACTTGACATTAAG 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 AACATGGACTGGATTTTCGTTGGAATCATTCCGTTATATCGTAATAAACTTGACATTAAG 894
Query 897 CCTCCCTTCTGCTGCTATGGTATGTTTGGAATATTGGGCATTCGAGATTCTTGTGTTCTT 956
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CATCCCTTCTGCTGCTATGGTATGTTTGGAATATTGGGCATTCGAGATTCTTGTGTTCTT 954
Query 957 GGCAGGAGTGATGCCAAACCCGGAAATCAATACTTCTTTGGTCGCTATATGCGTCAACAC 1016
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 955 GGCAGGAGTGATGCCAAACCCGGAAATCAATACTTCTTTGGTTGCTATATGCGTCAACAC 1014
Query 1017 GGAGGCGATTAGCTACATGTTAACATACGGACTTAGTGCAGCTGCAAGTACGCGTGTGTC 1076
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1015 GGAGGCGATTAGCTACATGTTAACATACGGACTTAGCGCAGCTGCAAGTACGCGTGTGTC 1074
Query 1077 CAATGAACTTGGAGCAGGAAATGTAAAAGGCGCAAAGAAGGCGACCTCTGTGTCCGTAAA 1136
|| ||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1075 GAACGAACTTGGAGCTGGAAATGTAACAGGCGCAAAGAAGGCGACCTCAGTGTCCGTAAA 1134
Query 1137 GTTGTCTTTAGTTCTTGCTCTCGGCGTTGTAATTGTTTTACTCGTAGGTCATGATGGTTG 1196
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1135 GTTGTCTTTAGTTCTTGCTCTCGGCGTTGTAATTGTTTTACTTGTAGGTCATGATGGTTG 1194
Query 1197 GGTTGGGTTATTTAGCGATAG-CTATGTGATTAAAGAGGAGTTTGCATCATTGAGGTTTT 1255
||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1195 GGTTGGGTTATTTAGTGATAGTC-ATGTGATTAAAGAGGAGTTTGCATCATTGAGGTTTT 1253
Query 1256 TTCTTGCTGCCTCTATAACTCTTGATTCAATCCAAGGAGTTTTATCAGGAGTTGCAAGAG 1315
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1254 TTCTTGCTGCATCTATAACTCTTGATTCAATCCAAGGAGTTTTATCAGGAGTTGCTAGAG 1313
Query 1316 GATGCGGATGGCAGCGTTTAGTCACGGTTATAAATTTGGCGACATTCTACTTAATTGGAA 1375
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1314 GATGCGGATGGCAGCGTTTAGTCACGGTTATAAATTTGGCAACATTCTACTTAATAGGAA 1373
Query 1376 TGCCGATTGCCGCCTTTTGTGGTTTCAAGTTGAAGTTTTATGCCAAGGGTTTGTGGATTG 1435
||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1374 TGCCGATCGCAGCCTTTTGTGGTTTCAAGTTGAAGTTTTATGCCAAGGGTTTATGGATTG 1433
Query 1436 GTTTGATATGTGGAATATTTTGCCAATCATCATCTCTTTTGCTTATGACAATATTCCGGA 1495
|| | || ||||| |||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1434 GTCTCATTTGTGGGATATTTTGCCAATCTTCATCTCTTTTGCTTATGACAATCTTCCGGA 1493
Query 1496 AGTGGACAAAGCTGAATGTTGCTACGGTCTGAAAACTCTAGTTACGTTCCATTTTTCTAC 1555
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 AGTGGACAAAGCTTAATGCTGCTACGGTCTGAAAACTCTAGTTACGTTCCATTTTTCTAC 1553
Query 1556 GGAGGCACATTTATTTTCTTAAGCAGATATGGAATCAGTTA-T-----CAAGATATATAT 1609
||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||
Sbjct 1554 GGAGGCACATTTATTTTCTTAAGCAAATATGGAATCAGTTACTATGATCAAGATATATAT 1613
Query 1610 TTGGAACTCATGATCA 1625
||||||||||||||||
Sbjct 1614 TTGGAACTCATGATCA 1629
> Ahg479864 jgi|Araly1|479864|fgenesh2_kg.3__2565__AT3G23550.1
Length=1557
Score = 1729 bits (936), Expect = 0.0
Identities = 1242/1391 (89%), Gaps = 15/1391 (1%)
Strand=Plus/Plus
Query 145 GAAGATGAAAGAGGAAGGAGATCAAGATCATCAACTT-TGGTTCAAAAAGTGATCGACGT 203
|||| |||| |||||| |||| || ||||||||||| | |||||| || | || |||||
Sbjct 80 GAAGGTGAAGGAGGAA-GAGA--AAAATCATCAACTTAT-GTTCAACAACTTATTGACGT 135
Query 204 GGAAGAAGCAAAAG-CTCAAATGATTTACTCTTTGCCAATGATACTCACCAATGTTTTCT 262
|||||||| |||| ||||||| ||||||||| | ||||||||| |||||||| ||||||
Sbjct 136 TGAAGAAGC-AAAGACTCAAATCATTTACTCTCTACCAATGATATTCACCAATCTTTTCT 194
Query 263 ACTACTGTATTCCTATAACTTCTGTGATGTTTGCTTCTCACCTCGGTCAACTCGAGCTCG 322
| || ||||| ||| |||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 195 ATTATTGTATCCCTTTAACCTCTGTGATGTTTGCTTCTCACCTCGGCCAACTCGAGCTCG 254
Query 323 CCGGTGCCACCCTTGCCAATTCTTGGGCCACCGTCTCCGGTTTTGCCTTCATGGTAGGGT 382
||||||| ||||| |||||||||||||| |||||| ||||||||||||||||| |||||
Sbjct 255 CCGGTGCTACCCTCGCCAATTCTTGGGCTACCGTCACCGGTTTTGCCTTCATGACAGGGT 314
Query 383 TAAGTGGATCACTTGAGACATTATGTGGACAAGGCTTTGGTGCAAAAAGATACAGGATGT 442
|||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 315 TAAGTGGAGCACTTGAGACATTATGTGGACAAGGCTTTGGTGCAAAAAGCTATAGGATGT 374
Query 443 T-GGGAGTTCATCTACAATCATCTTGCATCGTTTCATTAGTTTTCAGCATCCTCATCACC 501
| |||| ||||||| ||||||||||||||||| |||||||| ||||||||||||| ||||
Sbjct 375 TGGGGA-TTCATCTTCAATCATCTTGCATCGTCTCATTAGTCTTCAGCATCCTCACCACC 433
Query 502 ATCTTCTGGTTCTTCACAGAATCGATTTTTGGACTTCTCAGACAAGATCCTAGCATTTCA 561
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 434 ATCTTATGGTTCTTCACAGAATCGATTTTCGGACTTCTCAGACAAGATCCTAGCATCTCA 493
Query 562 AAACAAGCTGCACTCTATATGAAGTACCAAGCTCCCGGTTTACTAGCTTACGGGTTTTTA 621
|||||||||||||||||||||||||||| ||||||||||||| | ||||| ||||| |||
Sbjct 494 AAACAAGCTGCACTCTATATGAAGTACCTAGCTCCCGGTTTATTTGCTTATGGGTTCTTA 553
Query 622 CAAAATATTTTGAGATTTTGCCAAACACAATCGATCATTGCTCCACTAGTCATCTTCTCG 681
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 554 CAAAACATTTTGAGATTTTGCCAAACACAATCGATCATTACTCCACTAGTCATCTTCTCG 613
Query 682 TTTGTTCCCTTGGTGATAAACATTGCTACCGCATATGTTCTTGTTTATGTAGCTGGGCTT 741
|||||||||||||||||||| || | ||| | |||| ||| || || ||||||| ||
Sbjct 614 TTTGTTCCCTTGGTGATAAATATCGGTACTACGTATGCTCTGGTGCATTTAGCTGGCCTC 673
Query 742 GGATTCATTGGTGCTCCAATAGCTACATCTATTTCATTGTGGATAGCTTTCCTTTCGCTT 801
||||||||||| ||||| |||||||||||||||||| |||||||||||||| |||| ||
Sbjct 674 GGATTCATTGGAGCTCCCATAGCTACATCTATTTCAATGTGGATAGCTTTCGTTTCTCTC 733
Query 802 GGAACTTATGTGATGTGTTCAGAAAAGTTTAAGGAAACATGGACTGGATTTTCGTTGGAA 861
|||| ||| ||||| || ||||| |||||||||||||||||||| ||||||||| |||||
Sbjct 734 GGAATTTACGTGATTTGGTCAGACAAGTTTAAGGAAACATGGACCGGATTTTCGATGGAA 793
Query 862 TCATTCCGTTATATCGTAATAAACTTGACATTAAGCCTCCCTTCTGCTGCTATGGTATGT 921
||||| |||||| | ||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 794 TCATTTCGTTATGTAGTACTAAACTTGACATTAAGCATCCCTTCTGCTGCTATGGTATGT 853
Query 922 TTGGAATATTGGGCATTCGAGATTCTTGTGTTCTTGGCAGGAGTGATGCCAAACCCGGAA 981
|||||||||||||| ||||||||||| || |||||||||||| | |||||||| ||||||
Sbjct 854 TTGGAATATTGGGCGTTCGAGATTCTAGTATTCTTGGCAGGACTCATGCCAAATCCGGAA 913
Query 982 ATCAATACTTCTTTGGTCGCTATATGCGTCAACACGGAGGCGATTAGCTACATGTTAACA 1041
|||| || |||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 914 ATCACCACCTCTTTGGTAGCTATATGCGTCAACACCGAATCGATTAGCTACATGTTAACA 973
Query 1042 TACGGACTTAGTGCAGCTGCAAGTACGCGTGTGTCCAATGAACTTGGAGCAGGAAATGTA 1101
| ||||||||| |||||| ||||||| |||||||| || |||||||||||||||||||||
Sbjct 974 TGCGGACTTAGCGCAGCTACAAGTACTCGTGTGTCGAACGAACTTGGAGCAGGAAATGTA 1033
Query 1102 AAAGGCGCAAAGAAGGCGACCTCTGTGTCCGTAAAGTTGTCTTTAGTTCTTGCTCTCGGC 1161
|||||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||
Sbjct 1034 AAAGGCGCAAAGAAGGCGACTTCGGTGTCCGTTAAGTTGTCTTTAGTTCTAGCTCTCGGT 1093
Query 1162 GTTGTAATTGTTTTACTCGTAGGTCATGATGGTTGGGTTGGGTTATTTAGCGATAGCTAT 1221
|| || |||| | |||| ||||||||||||| ||||||||| ||||| ||| ||||| ||
Sbjct 1094 GTAGTGATTGCTATACTTGTAGGTCATGATGCTTGGGTTGGTTTATTCAGCAATAGCCAT 1153
Query 1222 GTGATTAAAGAGG-AGTTTGCATCATTGAGGTTTTTTCTTGCTGCCTCTATAACTCTTGA 1280
||||||||||||| | ||||||||| | |||||||| |||||||| |||||||| |||||
Sbjct 1154 GTGATTAAAGAGGGA-TTTGCATCACTAAGGTTTTTCCTTGCTGCATCTATAACACTTGA 1212
Query 1281 TTCAATCCAAGGAGTTTTATCAGGAGTTGCAAGAGGATGCGGATGGCAGCGTTTAGTCAC 1340
||| |||||||| ||||||||||||||||| |||||||| ||||||||||| |||| |||
Sbjct 1213 TTCCATCCAAGGTGTTTTATCAGGAGTTGCGAGAGGATGTGGATGGCAGCGGTTAGCCAC 1272
Query 1341 GGTTATAAATTTGGCGA-CATTCTACTTAATTGGAATGCCGATTGCCG-CCTTTTGTGGT 1398
|||||||||||||| || ||||||| |||||||||||||||||| | | ||||| |||||
Sbjct 1273 GGTTATAAATTTGG-GAACATTCTATTTAATTGGAATGCCGATTTCAGTCCTTT-GTGGT 1330
Query 1399 TTCAAGTTGAAGTTTTATGCCAAGGGTTTGTGGATTGGTTTGATATGTGGAATATTTTGC 1458
|||||||||||| || ||||||||||||||||||| ||| |||||||||| || ||||||
Sbjct 1331 TTCAAGTTGAAGCTTCATGCCAAGGGTTTGTGGATCGGTCTGATATGTGGGATGTTTTGC 1390
Query 1459 CAATCATCATCTCTTTTGCTTATGACAATATTCCGGAAGTGGACAAAGCTGAATGTTGCT 1518
||||| || |||||| ||||||||||||| ||||||||||||| ||||||||||| ||||
Sbjct 1391 CAATCCTCGTCTCTTCTGCTTATGACAATTTTCCGGAAGTGGATAAAGCTGAATGCTGCT 1450
Query 1519 ACGGTCTGAAA 1529
|| ||||||||
Sbjct 1451 ACTGTCTGAAA 1461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66505567770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5