BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23570.1
Length=1077
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479866 jgi|Araly1|479866|fgenesh2_kg.3__2567__AT3G23570.1 1308 0.0
Ahg922772 jgi|Araly1|922772|scaffold_104053.1 115 6e-25
> Ahg479866 jgi|Araly1|479866|fgenesh2_kg.3__2567__AT3G23570.1
Length=1018
Score = 1308 bits (708), Expect = 0.0
Identities = 837/898 (93%), Gaps = 14/898 (2%)
Strand=Plus/Plus
Query 19 TTAAAACAGAGGTCCCAAAGCGCGAGAGAGGAGTCGTCTTGTTTTTTGGTTCGG-CGAAA 77
|||||||||||||||| || | ||| |||||| | || | ||||||||||| | |||
Sbjct 1 TTAAAACAGAGGTCCC--AGAGAGAG-GAGGAG-CCTC-ACTGTTTTGGTTCGGCCAAAA 55
Query 78 ACAAGAATGTCAGGTCATCAGTGCACCGAGAACCCGCCTGATCTGGATCCAACTAGCGGG 137
||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 56 ACAAGAATGTCGGGTCATCAGTGCACCGAGAACCCGCCTCATCTGGATCCAAATAGCGGG 115
Query 138 TCGGGTCATGTCGAGAAACTCGGTAACCTTGACACCTACGTCTGTGGTTCCACTCATTCA 197
|| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 116 TCAGGTCATGTCGAGAAACTCGGCAACCTTGACACCTACGTCTCTGGTTCCACTCATTCA 175
Query 198 AAGCTTGCTGTTCTTCTTGTCCCTCATGTTTTCGGATATGAAACTCCAAACCTGAGGAAA 257
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 176 AAGCTTGCTGTTCTTCTTGTCTCTCATGTTTTCGGATATGAAACTCCTAACCTGAGGAAA 235
Query 258 CTTGCTGACAAGGTTGCAGAAGCTGGATTCTACGCGGTGGTTCCTGATTTCTTCCATGGA 317
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 236 CTTGCTGACAAGGTTGCAGAAGCTGGATTCTATGCGGTGGTTCCCGATTTCTTCCATGGA 295
Query 318 GATCCTTATAATCCCGAGAACCAGGATCGTCCGTTTCCTATTTGGATGAAAGATCATGAA 377
|||||||||||||||||||| ||||||| ||| ||| ||| ||| |||||||||| |
Sbjct 296 GATCCTTATAATCCCGAGAATAAGGATCGACCGCTTCTTATATGGGCAAAAGATCATGGA 355
Query 378 CTAGAGAAAGGGTTTGAGGAGTCAAAGCCAATAGTGGAGGCCTTGAAGAACAAAGGCATA 437
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 356 CAAGAGAAAGGGTTTGAGGACTCAAAGCCAATAGTGGAGGCCTTGAAGAACAAAGGCATA 415
Query 438 ACTAGTATAGGAGCAGCAGGGTTCTGTTGGGGTGCAAAAGTTGCGGTGGAACTAGCTAAG 497
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 416 ACTAGTATAGGAGCAGCAGGGTTCTGTTGGGGTGCAAAAGTTGCAGTGGAACTAGCTAAG 475
Query 498 GAAAAGCTTGTTGACGCTACTGTTTTGTTACATCC-TGCTCGCGTTACGGTGGATGATAT 556
|||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||
Sbjct 476 CAAAAGCTTGTTGACGCTACTGTTTTGTTACATCCCT-CTCGTGTTACGGTGGATGATAT 534
Query 557 CAA-GGAGGTCAACCTTCCAATTGCTGTATTAGGAGCTGAAATCGATCAAGTGTCTCCTC 615
||| || ||||||| |||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 535 CAAAGG-GGTCAACATTCCAATTGCAGTATTAGGAGCTGAAATCGATCAAGTGTCCCCTC 593
Query 616 CAGAACTTGTGAGGCAGTTCGAAGATATTTTAGCTTCTAAACCTCAGGTGAAGAGTTTTG 675
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 594 CAGAACTTGTGAGGCAATTCGAAGATATTTTAGCTTCTAAACCTGAGGTGAAGAGTTTTG 653
Query 676 TGAAGATATTCCCAAGA-TGCAAACACGGTTGGACTGTTAGATACAATGAAAATGATCCA 734
||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||
Sbjct 654 TGAAGATATTCCCAAGAGT-CAAACACGGTTGGACTGTTAGATACAATGAGAATGATCCA 712
Query 735 TCAGAAGTTGAAGCTGCA-ATGGAAGCTCACAAGGACATGCTCGCTTGGCTCATCGACTA 793
|||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||
Sbjct 713 TCAGAAGTTGAAGCTGCAGA-GGAAGCTCACAAAGACATGCTCGCTTGGCTCATCGACTA 771
Query 794 TCTCAAGTGAGAACTTGAAACGGTCTAAGCTTTGGTTTGCACATAACCAGCGGAGACCCA 853
| ||||||||||||||| |||||||||||||||||| |||| |||||||| |||||||||
Sbjct 772 TGTCAAGTGAGAACTTGGAACGGTCTAAGCTTTGGTGTGCATATAACCAGAGGAGACCCA 831
Query 854 AAATCATGTCTAGTACTCTTTAAATAATAAATGTAACTAGTAGTATCTTCTTTAATTT 911
||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 832 AAATCATATCTATTACTCTTTAAATAATAAATGTAACTAGTAGTATCTTCTTTACTTT 889
> Ahg922772 jgi|Araly1|922772|scaffold_104053.1
Length=310
Score = 115 bits (62), Expect = 6e-25
Identities = 77/84 (92%), Gaps = 1/84 (1%)
Strand=Plus/Plus
Query 389 GTTTGA-GGAGTCAAAGCCAATAGTGGAGGCCTTGAAGAACAAAGGCATAACTAGTATAG 447
|||| | |||||||||| |||||||||||||||||||||||||||||| |||| ||||||
Sbjct 16 GTTTTATGGAGTCAAAGTCAATAGTGGAGGCCTTGAAGAACAAAGGCAAAACTGGTATAG 75
Query 448 GAGCAGCAGGGTTCTGTTGGGGTG 471
|||||||| |||| ||||||||||
Sbjct 76 GAGCAGCAAGGTTTTGTTGGGGTG 99
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40105308684
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5