BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G23570.1 Length=1077 Score E Sequences producing significant alignments: (Bits) Value Ahg479866 jgi|Araly1|479866|fgenesh2_kg.3__2567__AT3G23570.1 1308 0.0 Ahg922772 jgi|Araly1|922772|scaffold_104053.1 115 6e-25 > Ahg479866 jgi|Araly1|479866|fgenesh2_kg.3__2567__AT3G23570.1 Length=1018 Score = 1308 bits (708), Expect = 0.0 Identities = 837/898 (93%), Gaps = 14/898 (2%) Strand=Plus/Plus Query 19 TTAAAACAGAGGTCCCAAAGCGCGAGAGAGGAGTCGTCTTGTTTTTTGGTTCGG-CGAAA 77 |||||||||||||||| || | ||| |||||| | || | ||||||||||| | ||| Sbjct 1 TTAAAACAGAGGTCCC--AGAGAGAG-GAGGAG-CCTC-ACTGTTTTGGTTCGGCCAAAA 55 Query 78 ACAAGAATGTCAGGTCATCAGTGCACCGAGAACCCGCCTGATCTGGATCCAACTAGCGGG 137 ||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 56 ACAAGAATGTCGGGTCATCAGTGCACCGAGAACCCGCCTCATCTGGATCCAAATAGCGGG 115 Query 138 TCGGGTCATGTCGAGAAACTCGGTAACCTTGACACCTACGTCTGTGGTTCCACTCATTCA 197 || |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct 116 TCAGGTCATGTCGAGAAACTCGGCAACCTTGACACCTACGTCTCTGGTTCCACTCATTCA 175 Query 198 AAGCTTGCTGTTCTTCTTGTCCCTCATGTTTTCGGATATGAAACTCCAAACCTGAGGAAA 257 ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| Sbjct 176 AAGCTTGCTGTTCTTCTTGTCTCTCATGTTTTCGGATATGAAACTCCTAACCTGAGGAAA 235 Query 258 CTTGCTGACAAGGTTGCAGAAGCTGGATTCTACGCGGTGGTTCCTGATTTCTTCCATGGA 317 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 236 CTTGCTGACAAGGTTGCAGAAGCTGGATTCTATGCGGTGGTTCCCGATTTCTTCCATGGA 295 Query 318 GATCCTTATAATCCCGAGAACCAGGATCGTCCGTTTCCTATTTGGATGAAAGATCATGAA 377 |||||||||||||||||||| ||||||| ||| ||| ||| ||| |||||||||| | Sbjct 296 GATCCTTATAATCCCGAGAATAAGGATCGACCGCTTCTTATATGGGCAAAAGATCATGGA 355 Query 378 CTAGAGAAAGGGTTTGAGGAGTCAAAGCCAATAGTGGAGGCCTTGAAGAACAAAGGCATA 437 | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 356 CAAGAGAAAGGGTTTGAGGACTCAAAGCCAATAGTGGAGGCCTTGAAGAACAAAGGCATA 415 Query 438 ACTAGTATAGGAGCAGCAGGGTTCTGTTGGGGTGCAAAAGTTGCGGTGGAACTAGCTAAG 497 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 416 ACTAGTATAGGAGCAGCAGGGTTCTGTTGGGGTGCAAAAGTTGCAGTGGAACTAGCTAAG 475 Query 498 GAAAAGCTTGTTGACGCTACTGTTTTGTTACATCC-TGCTCGCGTTACGGTGGATGATAT 556 |||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||| Sbjct 476 CAAAAGCTTGTTGACGCTACTGTTTTGTTACATCCCT-CTCGTGTTACGGTGGATGATAT 534 Query 557 CAA-GGAGGTCAACCTTCCAATTGCTGTATTAGGAGCTGAAATCGATCAAGTGTCTCCTC 615 ||| || ||||||| |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 535 CAAAGG-GGTCAACATTCCAATTGCAGTATTAGGAGCTGAAATCGATCAAGTGTCCCCTC 593 Query 616 CAGAACTTGTGAGGCAGTTCGAAGATATTTTAGCTTCTAAACCTCAGGTGAAGAGTTTTG 675 |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 594 CAGAACTTGTGAGGCAATTCGAAGATATTTTAGCTTCTAAACCTGAGGTGAAGAGTTTTG 653 Query 676 TGAAGATATTCCCAAGA-TGCAAACACGGTTGGACTGTTAGATACAATGAAAATGATCCA 734 ||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||| Sbjct 654 TGAAGATATTCCCAAGAGT-CAAACACGGTTGGACTGTTAGATACAATGAGAATGATCCA 712 Query 735 TCAGAAGTTGAAGCTGCA-ATGGAAGCTCACAAGGACATGCTCGCTTGGCTCATCGACTA 793 |||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||| Sbjct 713 TCAGAAGTTGAAGCTGCAGA-GGAAGCTCACAAAGACATGCTCGCTTGGCTCATCGACTA 771 Query 794 TCTCAAGTGAGAACTTGAAACGGTCTAAGCTTTGGTTTGCACATAACCAGCGGAGACCCA 853 | ||||||||||||||| |||||||||||||||||| |||| |||||||| ||||||||| Sbjct 772 TGTCAAGTGAGAACTTGGAACGGTCTAAGCTTTGGTGTGCATATAACCAGAGGAGACCCA 831 Query 854 AAATCATGTCTAGTACTCTTTAAATAATAAATGTAACTAGTAGTATCTTCTTTAATTT 911 ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 832 AAATCATATCTATTACTCTTTAAATAATAAATGTAACTAGTAGTATCTTCTTTACTTT 889 > Ahg922772 jgi|Araly1|922772|scaffold_104053.1 Length=310 Score = 115 bits (62), Expect = 6e-25 Identities = 77/84 (92%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 389 GTTTGA-GGAGTCAAAGCCAATAGTGGAGGCCTTGAAGAACAAAGGCATAACTAGTATAG 447 |||| | |||||||||| |||||||||||||||||||||||||||||| |||| |||||| Sbjct 16 GTTTTATGGAGTCAAAGTCAATAGTGGAGGCCTTGAAGAACAAAGGCAAAACTGGTATAG 75 Query 448 GAGCAGCAGGGTTCTGTTGGGGTG 471 |||||||| |||| |||||||||| Sbjct 76 GAGCAGCAAGGTTTTGTTGGGGTG 99 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40105308684 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5