BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23580.1
Length=1483
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479867 jgi|Araly1|479867|fgenesh2_kg.3__2568__AT3G23580.1 1892 0.0
> Ahg479867 jgi|Araly1|479867|fgenesh2_kg.3__2568__AT3G23580.1
Length=1251
Score = 1892 bits (1024), Expect = 0.0
Identities = 1155/1216 (95%), Gaps = 17/1216 (1%)
Strand=Plus/Plus
Query 86 ttttgttggttccttgtcggtttccaagggtttttgtttagggttttcattttctttttc 145
|||| || ||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 51 TTTTTTTAGTTTCTTGTCGGTTTCCAAGGGTTTTTGTTTAGGGTTTTCATTTTTTTTTTC 110
Query 146 CTTATCTATCTAATCCTCTGTTTCTCTCCACATCaaaaaaaaCCTCAAAATTAAGAGACG 205
| |||||||||||||||||| || ||||| |||| |||| |||| | |||||||
Sbjct 111 C-TATCTATCTAATCCTCTG-TT-TCTCCGCATC----AAAA----AAAA-TGAGAGACG 158
Query 206 AATTCGAGATAATGGGTTCGCTTAAGG-AAGGTCAAGGAAGAGACATGGAAGAAGGTGAA 264
|||||| ||||||||||||||| |||| |||| ||| |||||||||||||||||| ||||
Sbjct 159 AATTCGTGATAATGGGTTCGCTGAAGGAAAGG-CAAAGAAGAGACATGGAAGAAGATGAA 217
Query 265 TCAGAA-GAGCCGCTTTTGATGGCTCAGAACCAGAGATTCACTATGTTCCCCATTAGGTA 323
||| || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 218 TCA-AAGGAGCCACTTTTGATGGCACAGAACCAGAGATTCACTATGTTCCCCATTAGGTA 276
Query 324 CAAATCTATTTGGGAGATGTATAAGAAGGCTGAAGCCAGTTTCTGGACTGCTGAAGAGGT 383
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 CAAATCGATTTGGGAGATGTATAAGAAGGCTGAAGCCAGTTTCTGGACTGCTGAAGAGGT 336
Query 384 TGATCTTTCCACTGATGTGCAACAGTGGGAGGCCTTGACGGATTCAGAGAAACACTTTAT 443
|||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||
Sbjct 337 TGATCTTTCCACTGATGTGCAACAATGGGAAGCCTTGACGGATTCTGAGAAACATTTTAT 396
Query 444 CAGCCATATTCTGGCGTTTTTCGCAGCGTCAGATGGTATTGTTTTGGAGAATTTGGCTGC 503
||||||| ||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 397 CAGCCATGTTCTGGCTTTTTTCGCCGCGTCAGATGGTATTGTATTGGAGAATTTGGCTGC 456
Query 504 TAGATTCTTGAATGATGTCCAAGTTCCAGAGGCTCGTGCTTTCTATGGGTTTCAAATAGC 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 TAGATTCTTGAATGATGTCCAAGTTCCAGAGGCTCGTGCTTTCTATGGGTTTCAAATAGC 516
Query 564 CATGGAGAACATTCATTCAGAGATGTACAGCTTACTTCTGGAGACATTCATAAAGGACTC 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 CATGGAGAACATTCATTCAGAGATGTACAGCTTACTTCTGGAGACATTCATAAAGGACTC 576
Query 624 GAAGGAGAAGGATAGATTGTTCAATGCTATCGAGACCATTCCTTGTATATCCAAGAAGGC 683
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 577 GAAGGAGAAGGATAGATTGTTCAATGCTATCGAGACCATTCCTTGTATTTCCAAGAAGGC 636
Query 684 AAAATGGTGTTTAGATTGGATTCAAAGTCCTATGTCGTTTGCTGTGAGGCTGGTCGCTTT 743
|||||||||||||||||||||||| |||||| ||||||||||||||||| |||| |||||
Sbjct 637 AAAATGGTGTTTAGATTGGATTCAGAGTCCTTTGTCGTTTGCTGTGAGGTTGGTTGCTTT 696
Query 744 TGCATGTGTCGAAGGAATCTTCTTCTCAGGAAGCTTCTGTGCCATCTTCTGGCTAAAGAA 803
|||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 697 TGCATGCGTCGAAGGAATTTTCTTCTCAGGAAGTTTCTGTGCCATCTTCTGGCTTAAGAA 756
Query 804 GAGGGGTCTTATGCCGGGTTTGACCTTCTCAAACGAGCTTATATCGAGAGACGAGGGGCT 863
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 757 GAGGGGTCTTATGCCGGGTTTGACCTTTTCAAACGAGCTTATATCGAGAGACGAGGGGCT 816
Query 864 CCACTGTGACTTTGCGTGTCTCTTGTACAGTTTGCTGCAGAAGCAGCTTCCATTGGAGAA 923
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 817 CCACTGTGACTTTGCGTGTCTCTTGTACAGTTTGCTGCAGAAGCAGCTTCCGTTGGAGAA 876
Query 924 AGTTTATCAAATTGTTCACGAGGCAGTGGAAATTGAGACAGAGTTTGTCTGCAAGGCTCT 983
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 AGTTTATCAGATTGTTCACGAGGCAGTGGAAATTGAGACAGAGTTTGTCTGCAAGGCTCT 936
Query 984 TCCATGTGATCTGATCGGAATGAACTCAAACCTCATGAGTCAATACATACAATTTGTCGC 1043
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 937 TCCATGTGATCTGATCGGAATGAACTCAAACCTCATGAGTCAGTACATACAATTTGTCGC 996
Query 1044 TGACCGTCTTCTGGTTACCTTGGGATGTGAAAGGACATACAAAGCAGAAAATCCATTTGA 1103
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 997 TGACCGTCTTCTGGTTACCTTGGGATGTGAAAGGAGATACAAAGCAGAAAATCCATTTGA 1056
Query 1104 CTGGATGGAGTTCATATCTCTGCAAGGAAAGACAAACTTCTTTGAGAAGAGAGTGGGAGA 1163
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1057 CTGGATGGAGTTCATTTCTCTACAAGGAAAGACAAACTTCTTTGAGAAGAGAGTGGGAGA 1116
Query 1164 GTATCAGAAGGCATCAGTTATGTCGAACCTCCAAAATGGAAATCAGAACTACGAATTCAC 1223
||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1117 GTATCAGAAGGCATCGGTTATGTCGAACCTCCAAAATGGAAGTAAGAACTACGAATTCAC 1176
Query 1224 GACTGAAGAGGACTTTTGAATGAATCCGCCATCGAATCTGGAAGGGCTCATCAAAGTTTA 1283
|||||||||||||| |||||||| || |||||||||||||||||||||||||||||| |
Sbjct 1177 AACTGAAGAGGACTTCTGAATGAAACCCCCATCGAATCTGGAAGGGCTCATCAAAGTT-A 1235
Query 1284 GATTCTTTATGAGTCA 1299
||||||||||||||||
Sbjct 1236 GATTCTTTATGAGTCA 1251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55497486965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5