BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23600.1
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479869 jgi|Araly1|479869|fgenesh2_kg.3__2570__AT3G23600.2 1216 0.0
Ahg336820 jgi|Araly1|336820|fgenesh1_pg.C_scaffold_1003385 246 2e-64
Ahg948085 jgi|Araly1|948085|scaffold_704314.1 233 2e-60
> Ahg479869 jgi|Araly1|479869|fgenesh2_kg.3__2570__AT3G23600.2
Length=896
Score = 1216 bits (658), Expect = 0.0
Identities = 831/907 (92%), Gaps = 41/907 (5%)
Strand=Plus/Plus
Query 17 GTTTCTTTGTATCATCTCTCTGTTTTTCCGAAGAACTAACACATGTCGGGACCTCAGTGC 76
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1 GTTTCTTTGTCTCATCTCTCTGTTTTTCTGAAGAACTAACACATGTCGGGACCTAAGTGC 60
Query 77 TGTGAAAACCCGCCAACTCTTAACCCGGTTTCCGGGTCGGGTCATGTCGAGAAGCTGGGT 136
|| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGCGAAAACCCGCCGACTCTGAACCCGGTTTCCGGGTCGGGTCATGTCGAGAAGCTGGGT 120
Query 137 GGGCTTGATGCCTACGTCTCCGGCTCTGCCGAGTCCAAGCTCTGCGTCCTCCTCATTTCT 196
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 121 GGGCTTGATGCCTACGTCTCCGGCTCTCCCGATTCCAAGCTCTGCGTCCTCCTCATTTCT 180
Query 197 GATATTTTTGGTTTTGAAGCTCCAAACTTAAGGGCGCTTGCGGACAAGGTTGCAGCTTCT 256
||||| ||||||| ||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 181 GATATCTTTGGTTATGAAGCTCCAAACTTGAGGGCGCTTGCGGATAAGGTTGCAGCTTCT 240
Query 257 GGATTCTATGTTGTGGTTCCTGATTACTTTGGTGGAGATCCTTATAATCCCTCTAACCAG 316
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 241 GGATTCTATGTTGTGGTTCCTGATTACTTTGGTGGAGATCCTTATGATCCCTCTAACCAG 300
Query 317 GACAGACCCATCCCTGTCTGGATCAAAGACCATGGCTGTGATAAGGGCTTTGAAAACACG 376
|||||||||||| ||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 301 GACAGACCCATCGCTGTCTGGATCAAAGACCATGGCTGGGATAAGGGCTTCGACAACACC 360
Query 377 AAACCAGTACTTGAAACCATAAAGAACAAAGGCATAACTGCCATTGGAGCCGCAGGGATG 436
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAACCAGTACTTGAAGCTATAAAGAACAAAGGCATAACTGCCATTGGAGCCGCAGGGATG 420
Query 437 TGTTGGGGTGCAAAAGTAGTGGTGGAACTGTCTAAAGAAGAGCTTATTCAAGCAGCTGTG 496
|||||||||| | | | |||||||||||||||||||||||||||||||||||||
Sbjct 421 TGTTGGGGTG------T-G-G-TGGAACTGTCTAAAGAAGAGCTTATTCAAGCAGCTGTT 471
Query 497 TTGCTTCATCCTTCTTTTGTCA-ATGTTGATGATATCAAAGG-TGGGAAGGCTCCAATTG 554
|||||||||||||||||||||| | |||||||||||||| || |||||||||||||||||
Sbjct 472 TTGCTTCATCCTTCTTTTGTCACA-GTTGATGATATCAA-GGCTGGGAAGGCTCCAATTG 529
Query 555 CTATATTAGGAGCTGAAATTGATCAAATGTCCCCACCAGCACTCTTGAAGCAATTTGAGG 614
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 CTATATTAGGAGCTGAGATTGATCAAATGTCCCCACCAGCACTCTTGAAGCAATTTGAGG 589
Query 615 AGATTCTATCTTCCAAACCCGAGGTGAATAGTTACGTGAAGATACACCCGAAAGTGTCAC 674
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 590 AGATTCTAGCTTCCAAACCCGAGGTGAATAGTTACGTGAAGATATACCCGAAAGTGTCAC 649
Query 675 ACGGATGGACAGTTAGATACAACATCGATGAACCAGAGGCGGTTAAAGCAGCAGAAGAAG 734
|||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||
Sbjct 650 ACGGTTGGACAGTTAGATACAGCATCGATGATCCAGAGGCGGTTAAAGCTGCAGAAGAAG 709
Query 735 CTCACAAGGAGATGCTTGATTGGTTTGTGACCTACATCAAATGATTTGAGAAAGAAAGAA 794
||||||| ||||||||||||||||||| ||| ||| ||||||||||||||||||||| |
Sbjct 710 CTCACAAAGAGATGCTTGATTGGTTTGCGACATACGTCAAATGATTTGAGAAAGAAA-A- 767
Query 795 AGGTATTGTCTATTACTTCATATATGCAAAGAATAAAAATTAAAGAGAGACAAAGCAAAA 854
|| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 768 ---------CT-T--C---ATATATGCAAAGAATAAAAATTAAAGAGAGACAAAGCAAAA 812
Query 855 CTCTTGGTTGGTGTTTCAATTTCTACTTTCTATAGTCTTTTGAAGCATTCTCTGAGATTC 914
||||||||| ||| | |||| | |||||| || || |||||||||| ||||||||
Sbjct 813 CTCTTGGTT--TGT---A-TTTC-AGTTTCTAC-GT-TT--GAAGCATTCTGTGAGATTC 861
Query 915 TGTGATA 921
|||||||
Sbjct 862 TGTGATA 868
> Ahg336820 jgi|Araly1|336820|fgenesh1_pg.C_scaffold_1003385
Length=537
Score = 246 bits (133), Expect = 2e-64
Identities = 151/160 (94%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 619 TCTATCTTCCAAACCCGAGGTGAATAGTTACGTGAAGATACACCCGAAAGTGTCACACGG 678
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 378 TCTAGCTTCCAAACCCGAGATGAATAGTTACGTGAAGATACACCCGAAAGTGTCACACGG 437
Query 679 ATGGACAGTTAGATACAACATCGATGAACCAGAGGCGGTTAAAGCAGCAGAAGAAGCTCA 738
|||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 438 TTGGACAGTTAGATACAGCATCGATGATCCAGAGGCGGTTAAAGCTGCAGAAGAAGCTCA 497
Query 739 CAAGGAGATGCTTGATTGGTTTGTGACCTACATCAAATGA 778
||| ||||||||||||||||||||||| ||| ||||||||
Sbjct 498 CAAAGAGATGCTTGATTGGTTTGTGACTTACGTCAAATGA 537
> Ahg948085 jgi|Araly1|948085|scaffold_704314.1
Length=329
Score = 233 bits (126), Expect = 2e-60
Identities = 140/147 (95%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 619 TCTATCTTCCAAACCCGAGGTGAATAGTTACGTGAAGATACACCCGAAAGTGTCACACGG 678
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 159 TCTAGCTTCCAAACCCGAGATGAATAGTTACGTGAAGATACACCCGAAAGTGTCACACGG 218
Query 679 ATGGACAGTTAGATACAACATCGATGAACCAGAGGCGGTTAAAGCAGCAGAAGAAGCTCA 738
|||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 219 TTGGACAGTTAGATACAGCATCGATGATCCAGAGGCGGTTAAAGCTGCAGAAGAAGCTCA 278
Query 739 CAAGGAGATGCTTGATTGGTTTGTGAC 765
||| |||||||||||||||||||||||
Sbjct 279 CAAAGAGATGCTTGATTGGTTTGTGAC 305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36445508652
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5