BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G23605.1

Length=822
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg930387 jgi|Araly1|930387|scaffold_302844.1                        610    5e-174


> Ahg930387 jgi|Araly1|930387|scaffold_302844.1
Length=460

 Score =  610 bits (330),  Expect = 5e-174
 Identities = 421/462 (91%), Gaps = 18/462 (4%)
 Strand=Plus/Plus

Query  106  TGCTCGAGTGTCAATCAATGATGGAGAAATTATCACCGTTCGTAGACGTCGCCTCTCTGG  165
            ||||||||||| ||||||||||||||||||||||||||||| | ||| |||||||| |||
Sbjct  1    TGCTCGAGTGTGAATCAATGATGGAGAAATTATCACCGTTCATGGACATCGCCTCTTTGG  60

Query  166  AAATCGAGTCTCTGCGAAGAATCAAACGCCCGAAACGCTTCTCTGAAGAAGAATCAGAAG  225
            ||||||||||||| ||||||||||||||||||||||||||||||   ||||||||   ||
Sbjct  61   AAATCGAGTCTCTACGAAGAATCAAACGCCCGAAACGCTTCTCT---GAAGAATC---AG  114

Query  226  AAACCGAGAATACGACGAATTCATCAAACGCGGTATTCGGATTCCCTAACTTACCAGAAG  285
            ||||||||   |||| || ||||||||||||||| |||||||||||| ||||||||||||
Sbjct  115  AAACCGAG---ACGATGACTTCATCAAACGCGGTTTTCGGATTCCCTCACTTACCAGAAG  171

Query  286  AACCGAATCGCGATATGGATCAAAGCGTTTTGTGCAGAATCTGCGTTCGATTACCAGATG  345
            |||| ||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct  172  AACCAAATCGCGATTTGGATCAAAGCGTTTTGTGTAGAATCCGCGTTCGATTACCAGATG  231

Query  346  GGAGAAGAATACAGAGAAGTTTCTTAAAGAGTGAATCTGTTCAGCTTCTTTGGTCGTTTT  405
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  232  GGAGAAGAATACAGAGGAGTTTCTTAAAGAGTGAATCTGTTCAGCTTCTTTGGTCGTTTT  291

Query  406  GTTATTCGCAGATTGGTGATGAATCTTCTGAGAGAAAGCGGCGTTTTAAATTGATTCAAG  465
            |||||||||||||||   ||||||||   |||||||||||   |||||||||||||||||
Sbjct  292  GTTATTCGCAGATTG---ATGAATCT---GAGAGAAAGCG---TTTTAAATTGATTCAAG  342

Query  466  GGTTTCCTGGGGATTATAAGAATCTTTATTTTGGATCTAATACTACTTTTGAACAATCTG  525
             |||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct  343  CGTTTCCTGGGGAATATAAGAATCTTTATTTTGGATCTAATACGACTTTTGAAGAATCTG  402

Query  526  GGCTTGCTAATTCCTTGGTTTCTGTTACTTGGCTCTGAAGAA  567
            ||||||| ||||| |||||||| ||||||||| |||||||||
Sbjct  403  GGCTTGCGAATTCTTTGGTTTCGGTTACTTGGGTCTGAAGAA  444



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30383964849


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5