BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23610.3
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930388 jgi|Araly1|930388|scaffold_302845.1 920 0.0
Ahg915481 jgi|Araly1|915481|Al_scaffold_0008_232 185 5e-46
Ahg493213 jgi|Araly1|493213|fgenesh2_kg.7__2646__AT4G16630.1 54.7 1e-06
> Ahg930388 jgi|Araly1|930388|scaffold_302845.1
Length=654
Score = 920 bits (498), Expect = 0.0
Identities = 547/571 (96%), Gaps = 2/571 (0%)
Strand=Plus/Plus
Query 160 TGAGTTCTAGAGACAGAGGATCACCTTCTTCTTCTTCGTCATCTTCTTCGTTACCAGGAA 219
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 30 TGAGTTCTAGAGACAGAGGATCACCTTCTTCTTCTTCGTCGTCTTCTTCGTTACCAGGAA 89
Query 220 TAGAAAAGTATAATGAAAAGGTGAAGAATCAGATACAAGCTCTTGTTCGTGTTATTAAAG 279
|||| |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 90 TAGATAAGTATAACGAAAAGGTGAAAAATCAGATACAAGCACTTGTTCGTGTTATTAAAG 149
Query 280 TTGCTCGTACCTATAGAGACGACAATGTCCCTTCCCTTATTGAACAGGGTCTTTATCTTG 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 150 TTGCTCGTACCTATAGAGACGACAATGTCCCTTCCCTTATTGAACAGGGTCTTTATCTTG 209
Query 340 GATCTGTTGCAGCAGCTAGTAATAAGAATGTTTTGAAATCTTACAATGTTACACATATTT 399
|||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||| |
Sbjct 210 GATCTGTTGCTGCAGCTTGTAACAAGAATGTTTTGAAATCTTACAATGTTACACATATCT 269
Query 400 TGACTGTTGCTAGTTCGTTGAGACCAGCTCATCCTGATGACTTTGTTTACAAGGTTGTTC 459
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 270 TGACTGTTGCTAGTTCTTTGAGACCAGCTCATCCTGATGACTTTGTTTACAAGGTTGTTC 329
Query 460 GAGTCGTGGATAAGGAAGATACAAATCTAGAAATGTACTTCGATGAGTGTGTTGATTTCA 519
|||| |||||||||||||| |||||| | ||||||||||| |||||||||||||||||||
Sbjct 330 GAGTTGTGGATAAGGAAGACACAAATTTGGAAATGTACTTTGATGAGTGTGTTGATTTCA 389
Query 520 TTGATGAAGCCAAGAGACAAGGCGGTAGTGTTCTTGTTCATTGCTTTGTTGGCAAATCAC 579
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 390 TTGATGAAGCCAAGAGACAAGGTGGTAGTGTTCTTGTTCATTGCTTTGTTGGCAAATCAC 449
Query 580 GGAGTGTCACTATAGTTGTTGCTTACCTCATGAAGAAACACGGTATGACTTTAGCTCAAG 639
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 450 GGAGTGTCACTATAGTTGTTGCTTACCTCATGAAGAAACACGGAATGACTTTAGCCCAAG 509
Query 640 CATTGCAACATGTTAAA-AGCAAAAGACCCGTGGCAAGTCCTAATGCTGGTTTCATCAGA 698
||| ||||||||| ||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 510 CATCGCAACATGT-AAAGAGCAAAAGACCTGTGGCAAGTCCTAATGCCGGTTTCATCAGA 568
Query 699 CAATTACAAGACCTCGAGAAGTCTATGCAAG 729
|| ||||||||||||||||||||||||||||
Sbjct 569 CAGTTACAAGACCTCGAGAAGTCTATGCAAG 599
> Ahg915481 jgi|Araly1|915481|Al_scaffold_0008_232
Length=1026
Score = 185 bits (100), Expect = 5e-46
Identities = 147/168 (88%), Gaps = 9/168 (5%)
Strand=Plus/Plus
Query 160 TGAGTTCTAGAGACAGAGGATCACCTTCTTCTTCTTCGTCATCTTCTTCGTTACCAGGAA 219
|||||||||||||||||||||||||||||||||| ||||| |||||| ||||
Sbjct 122 TGAGTTCTAGAGACAGAGGATCACCTTCTTCTTCGTCGTC---------GTTACCTGGAA 172
Query 220 TAGAAAAGTATAATGAAAAGGTGAAGAATCAGATACAAGCTCTTGTTCGTGTTATTAAAG 279
|||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 173 TAGATAAGTATAACGAAAAGGTGAAGAATCAGATACAAGCACTTGTTCGTGTTATTAAGG 232
Query 280 TTGCTCGTACCTATAGAGACGACAATGTCCCTTCCCTTATTGAACAGG 327
||||||| ||||||||||| |||||||||||||| || || ||| |||
Sbjct 233 TTGCTCGCACCTATAGAGATGACAATGTCCCTTCTCTAATCGAAGAGG 280
> Ahg493213 jgi|Araly1|493213|fgenesh2_kg.7__2646__AT4G16630.1
Length=2578
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Minus
Query 184 CTTCTTCTTCTTCGTCATCTTCTTCGTTA 212
|||||||||||||||||||||||||||||
Sbjct 195 CTTCTTCTTCTTCGTCATCTTCTTCGTTA 167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38504146170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5