BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23620.1
Length=1351
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479874 jgi|Araly1|479874|fgenesh2_kg.3__2575__AT3G23620.1 1775 0.0
> Ahg479874 jgi|Araly1|479874|fgenesh2_kg.3__2575__AT3G23620.1
Length=1223
Score = 1775 bits (961), Expect = 0.0
Identities = 1155/1245 (93%), Gaps = 27/1245 (2%)
Strand=Plus/Plus
Query 1 AAAGTTGCTTCCAATTGTGAGGAGGCACTAAAACCCTAGACTCCATATCAATCAATCGAA 60
|||||||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct 1 AAAGTTGCTTCCAATTGTGAGG-CACACTAAAACCCTAGACTCCATATC--T---T---- 50
Query 61 AAACCTTTCTCTCTTCTTTCGGAGCCGTCGCTTGTGAAACTTTCCGGCGATTTAACAGAG 120
| ||||||||||||||||||||||||||||||| |||||||||||| | | ||
Sbjct 51 ----C---CTCTCTTCTTTCGGAGCCGTCGCTTGTGAAAATTTCCGGCGATTGATC--AG 101
Query 121 TCATGATGGAAATACGAACTCCGAAGACTGGCAAAGCCAAGCGTGTTCTCG-AAAGCCGA 179
|||||||||||||||||||||||||||||||||||||||| ||||| |||| |||| |||
Sbjct 102 TCATGATGGAAATACGAACTCCGAAGACTGGCAAAGCCAAACGTGTACTCGAAAAG-CGA 160
Query 180 GCTCCTAAGTTGGTTGAAACTGGGAAGAAGACGTTGATACTTCATGGAACAAAGACGAGT 239
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 161 GCTCCTAAGTTGGTTGAAACTGGGAAGACGACATTGATACTTCATGGAACAAAGACGAGT 220
Query 240 GCTACACTTAGCTCTGTAATGACGGAACTCTACCGTTTGAAGAAGGGAGGTGCCATCAGA 299
|||||||||||||||||| | | |||||| || ||||||||||||||||||||||| |||
Sbjct 221 GCTACACTTAGCTCTGTATTAATGGAACTGTATCGTTTGAAGAAGGGAGGTGCCATTAGA 280
Query 300 TATTCAAGGAGGAATGAGAATATTAGGCCTTTCGAGAGTGGAGGTGAAACTTCATTAGAG 359
|||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 281 TATTCAAGAAGGAATGAGAATATTAGGCCTTTTGAGAGTGGTGGTGAAACTTCATTAGAG 340
Query 360 TTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGTATGGTTCTCACACGAAGAAACGA 419
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 TTCTTCTCTCAGAAAACTGATTGTAGCATTTTTGTGTATGGTTCTCACACGAAGAAACGA 400
Query 420 CCTGACAATCTTGTACTTGGGAGAATGTATGATCACCAAGTCTATGATCTTATAGAAGTT 479
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 401 CCTGACAATCTTGTACTTGGGAGAATGTATGATCACCAGGTCTATGATCTTATAGAAGTT 460
Query 480 GGGATTGAGAACTTTAAATCCTTGCGGGCGTTTTCGTATGACAAGAAATTCGCACCTCAT 539
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 461 GGGATTGAGAACTTTAAATCCTTGCTGGCGTTTTCGTATGACAAGAAATTCGCTCCTCAT 520
Query 540 GAAGGAACAAAGCCTTTCATTTGCTTTATTGGTGAAGGTTTTGAGAATGTATCAGAGCTT 599
|||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 521 GAAGGATCAAAGCCTTTCATTTGCTTTACTGGTGAAGGTTTTGAGAATGTACCAGAGCTT 580
Query 600 AAGCATCTCAAAGAAGTCCTCACTGATCTTTTTCGTGGCGAGGTTGTGGATAATCTAAAT 659
|| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 581 AAACATCTAAAAGAAGTCCTTACTGATCTGTTTCGTGGCGAGGTTGTGGATAATCTAAAT 640
Query 660 CTTACTGGTTTAGACCGCGCTTACGTATGTTCAGCTATATCCCCAACAAAGGTTTTCCTT 719
|||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 641 CTTACTGGACTAGACCGAGCTTACGTATGTTCAGCTATATCCCCAACTAAGGTTTTCCTT 700
Query 720 ACTCATTGCGCATTGAAGCTTAAAAAGTCAGGATCCATTGTTCCGAGAATGGAGCTTGTT 779
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 701 ACTCATTGCGCATTGAAGCTTAAAAAGTCAGGCTCCATTGTTCCTAGAATGGAGCTTGTT 760
Query 780 GAAGTCGGTCCATCCATGGACTTGGTTATCAGGCGTAATCGTCTTCCTAACGATAGCTTA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 761 GAAGTCGGTCCATCCATGGACTTGGTTATCAGGCGTAATCGTCTTCCTAACGAAAGCTTA 820
Query 840 ATGAAAGAAGCAATGAGAACATCCAAGGATAAGCCTAAGAAGAAGGAGAAAAACGTTGAT 899
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 821 ATGAAAGAAGCAATGAGAACATCCAAGGATAAGCCTAAGAAGAAGGTGAAAAACGTTGAT 880
Query 900 CAAGATGCAGTACTAGGGAAGACTGGGAAGATTTATATGCCTGATCAGAAGCTGAAAGAA 959
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 881 CAAGATGCAGTACTAGGGAAGACTGGGAAGATTTACATGCCTGATCAGAAGCTGGGCGAT 940
Query 960 ATGAAACTGTTCGATAAATCTAAGGGATCGAAGAGAGAGCGGAAAGACGCTAAGCTTAAG 1019
|||||| || |||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct 941 ATGAAATTGCTCGATAAATCCAAGGGATTGAAGAGAGAGCGGAAAGAGGCTAAGCTTAAG 1000
Query 1020 CATAAGGAAGAGACTGTTGCCAAAAAGATGAAGGTGTCTTCTGAGTGACTCAACAGACCA 1079
|||||||||||||||||| ||||||||||||| | ||||||||||||||||| |||||||
Sbjct 1001 CATAAGGAAGAGACTGTTTCCAAAAAGATGAAAGAGTCTTCTGAGTGACTCACCAGACCA 1060
Query 1080 CTCTTGGCTCTGC-A--TCAACAGCTTTCAATATGTGGAAGATGAAATGATTTTGTAGTG 1136
||||||||||| | | ||||||| |||||||||| |||||||||| ||||||||||||
Sbjct 1061 CTCTTGGCTCTTCTACATCAACAGTTTTCAATATGAGGAAGATGAA--GATTTTGTAGTG 1118
Query 1137 T-AATGAGCTTGACTTTTATTTTTCCATTAGAATCTATAACTGAATGTTTTCTATACGCT 1195
|||| || || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1119 AGAATGGGCATGGCTTTTATTTTTCCATTAGAATCTATAACTGAATGTTTTTTATACGCT 1178
Query 1196 AATATTTTATTAAGGTGATTTTGTTTTGTTAAAACTCTGCAGCAA 1240
|||||||||||||| ||| |||||||||||||| ||||||||||
Sbjct 1179 AATATTTTATTAAGTTGACTTTGTTTTGTTAAATTTCTGCAGCAA 1223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50550987942
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5