BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23630.1
Length=1516
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930390 jgi|Araly1|930390|scaffold_302847.1 1629 0.0
> Ahg930390 jgi|Araly1|930390|scaffold_302847.1
Length=1028
Score = 1629 bits (882), Expect = 0.0
Identities = 982/1031 (95%), Gaps = 3/1031 (0%)
Strand=Plus/Plus
Query 163 CAACaaaaaaaGTCAATCATCATGAAGTTCTCAATCTCATCACTGAAGCAGGTACAACCA 222
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 CAACAAAAAAAGTCAATCATCATGAAGTTCTCAATCTCAACACTGAAGCAGGTACAACCA 60
Query 223 ATCTTGTGCTTCAAGAACAAGCTATCTAAGGTCAACGTCAACTCTTTTCTCCATCCCAAA 282
|||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 ATCTTGAGTTTCAAGAACAAGCTATGTAAGGTCAACGTCAACTCTTTTCTCCATCCCAAA 120
Query 283 GAAAAAGTCATCTTTGTGATGGGAGCTACCGGATCGGGTAAGTCTCGTCTCGCCATCGAC 342
||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 GAAAAAGTCGTCTTCGTGATGGGAGCTACCGGATCGGGTAAGTCTCGTCTTGCCATCGAC 180
Query 343 CTAGCAACTCGTTTTCAAGGAGAGATCATAAACTCCGACAAGATTCAACTTTACAAGGGC 402
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 181 CTAGCAACTCGTTTTCAAGGAGAGATCATAAACTCCGACAAGATCCAACTCTACAAGGGC 240
Query 403 CTAGACGTCCTAACAAACAAAGTCACCCCTAAAGAATGCCGAGGCGTGCCTCACCACTTG 462
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCGACGTCCTAACAAACAAAGTCACCCCTAAAGAATGCCGAGGCGTGCCTCACCACTTG 300
Query 463 CTTGGAGTATTCGACTCCGAAGCCGGAAACCTAACGGCCACCCAGTATAGCCGCCTTGCG 522
|||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||
Sbjct 301 CTTGGAGTATTCGACTCCGAAGCCGGAAACATAACAGCCACCGAGTATAGCCGCCTTGCT 360
Query 523 TCACAAGCAATCTCGAAACTCTCAGCGAACAACAAGCTTCCCATAGTAGCCGGTGGATCA 582
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCACAAGAAATCTCAAAACTCTCAGCGAACAACAAGCTTCCCATAGTAGCCGGTGGATCA 420
Query 583 AACTCTTACATCGAAGCACTTGTTAATCATTCCTCGGGGTTTTTATTAAACAACTACGAT 642
|||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||
Sbjct 421 AACTCTTACATCGAAGCACTCGCGAATCATTCCTCGGGGTTTTTGTTAAACAACTACGAC 480
Query 643 TGTTGTTTCATTTGGGTCGACGTTTCCTTACCCGTACTTAACTCCTTTGTCTCAAAACGT 702
|| |||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 481 TGCTGTTTCATTTGGGTTGATGTTTCCTTACCCGTACTAAACTCCTTTGTCTCAAAACGT 540
Query 703 GTCGACCGCATGATGGAAGCAGGATTACTCGAAGAAGTAAGAGAAGTGTTCAATCCAAAA 762
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 541 GTCGACCGCATGATGGAAGCAGGATTACTTGAAGAAGTAAGAGAAATGTTCAATCCAAAA 600
Query 763 GCGAATTACTCCGTAGGGATACGACGAGCTATCGGAGTCCCCGAGCTCCATGAATATTTA 822
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 601 GCGAATTACTCCGTAGGGATAAGACGAGCTATCGGAGTCCCCGAGCTCCACGAATATTTA 660
Query 823 CGTAACGAATCTCTAGTGGACCGTGCCACAAAAAGTAAAATGCTTGACGTAGCCGTTAAA 882
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 661 CGTAACGAATCTCTAGTGGACCGTGCCACACAAAGTAAAATGCTTGACGTAGCAGTTAAA 720
Query 883 AATATCAAAAAGAACACTGAGATTTTAGCTTGTCGACAGTTAAAAAAGATTCAACGGCTT 942
||||||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 721 AATATCAAAAAGAACACAGAGATATTAGCGTGTCGGCAGTTAAAAAAGATTCAACGGCTT 780
Query 943 CACAAGAAGTGGAAGATGTCTATGCATCGTGTTGACGCCACTGAGGTGTTCTTGAAACGC 1002
||||||||||||||| |||||||||| ||||| || || || ||||||||||||||||||
Sbjct 781 CACAAGAAGTGGAAGTTGTCTATGCACCGTGTGGATGCAACCGAGGTGTTCTTGAAACGC 840
Query 1003 AACGTAGAAGAACAAGACGAGGCTTGGGAGAATCTTGTAGCGAGACCAAGCGAGAGAATC 1062
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 841 AACGTAGAAGAACAAGACGAGGCTTGGGAGAATCTTGTAGCTAGACCAAGCGAGAGAATC 900
Query 1063 GTCGATAAGTTTTATAATAATAATAACCAACTGAAAAATGATGATGTTGAGCACTGTTTG 1122
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 901 GTCGACAAGTTTTATAATAATAA---CCAACTGAAAAATGATGATGTTGAGCACTGTTTG 957
Query 1123 GCGGCATCTTACGGCGGAGGAAGTGGAAGTAGAGCCCACAATATGATATGAAAAGTTTTG 1182
||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 958 GCGGCGTCTTATGGCGGAGGAACTGGAAGTAGAGCCCACAATATGATATGAAAAGTTTTG 1017
Query 1183 TCATTGATCAT 1193
|||||||||||
Sbjct 1018 TCATTGATCAT 1028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56754465050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5