BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G23637.1

Length=162
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg930397 jgi|Araly1|930397|scaffold_302854.1                        265    8e-71


> Ahg930397 jgi|Araly1|930397|scaffold_302854.1
Length=206

 Score =  265 bits (143),  Expect = 8e-71
 Identities = 153/158 (97%), Gaps = 0/158 (0%)
 Strand=Plus/Plus

Query  1    ATGTTGGTATCCAACATATCTGGAAAATTGATGAGTCAGTTGATGGAAAAGATGAAAGAG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  23   ATGTTGGTATCCAACATATCTGGAAAATTGATGAGTCAGTTGATGGAAAAGATGAAAGAG  82

Query  61   AGGTTGGAGAAGATGAAGAGGACAGTGAGGCAACAAAGAGCAAAGCTTCATATCATCAGA  120
            ||| |||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||
Sbjct  83   AGGCTGGAGAAGATGAGGAGGACAGTGAGACAACAGAGAGCAAAGCTTCATATCATCAGA  142

Query  121  ATTTGCATCACTATGCTTCTTTCTTCCGATGATTACTC  158
            ||||||||||||||||||||||||||||||||| ||||
Sbjct  143  ATTTGCATCACTATGCTTCTTTCTTCCGATGATAACTC  180



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 5308168279


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5