BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G23645.1

Length=404
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg930400 jgi|Araly1|930400|scaffold_302857.1                        294    3e-79


> Ahg930400 jgi|Araly1|930400|scaffold_302857.1
Length=585

 Score =  294 bits (159),  Expect = 3e-79
 Identities = 192/208 (92%), Gaps = 1/208 (0%)
 Strand=Plus/Plus

Query  104  GTTATGAAGATTTGATTTATCGTGTTACGTCTCTAAGGCTCAATTCA-CACTTATCCCTC  162
            |||||||||||||||||||| ||||||||||||||||||| |||||| || ||||||| |
Sbjct  337  GTTATGAAGATTTGATTTATTGTGTTACGTCTCTAAGGCTGAATTCACCATTTATCCCAC  396

Query  163  TGATCCCATAGTGTTGTAAAAATTTAAAAATTGATAACATGTATTGCCTCTGTGATGCTG  222
             ||||||| | |||||||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct  397  CGATCCCAGAATGTTGTAAGAATTTAAAAATTGATAAGATGTATTGCCTTTGTGATGCTG  456

Query  223  TCAATCCTACTTTTGCCGAACGTTTTGACGTAAAAAAGCTCGGCAAACTGTCTCACGCGT  282
            |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |
Sbjct  457  TCAATCCTACTTTTGGTGAACGTTTTGACGTAAAAAAGCTCGGCAAACTGTCTCACGCAT  516

Query  283  GCGGTGATCTATTAGCTCATGGCTCTTA  310
            | |||||||||||||||| |||||||||
Sbjct  517  GTGGTGATCTATTAGCTCCTGGCTCTTA  544



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14499123820


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5