BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G23660.2 Length=2646 Score E Sequences producing significant alignments: (Bits) Value Ahg479878 jgi|Araly1|479878|fgenesh2_kg.3__2579__AT3G23660.1 2545 0.0 Ahg493493 jgi|Araly1|493493|fgenesh2_kg.7__2926__AT4G14160.1 1559 0.0 Ahg314991 jgi|Araly1|314991|fgenesh1_pm.C_scaffold_2000024 327 2e-88 > Ahg479878 jgi|Araly1|479878|fgenesh2_kg.3__2579__AT3G23660.1 Length=2499 Score = 2545 bits (1378), Expect = 0.0 Identities = 1563/1649 (95%), Gaps = 25/1649 (2%) Strand=Plus/Plus Query 52 CTTCCAACGAATGGCGGAGACTGCGAATACAGATCTAGAAGGAATCGAT-GGAGTTCGTA 110 |||||||| |||||||||||| ||||||||||||||||||||||||| | |||||||||| Sbjct 19 CTTCCAAC-AATGGCGGAGACGGCGAATACAGATCTAGAAGGAATCG-TCGGAGTTCGTA 76 Query 111 TGACATGGAACGTCTGGCCTCATTCCAAAGCTGAAGCTAGCAAATGCGTGATCCCACTCG 170 ||||||||||||| ||||||| ||| |||| ||||||||||||||||||||||||||||| Sbjct 77 TGACATGGAACGTTTGGCCTCGTTCTAAAGTTGAAGCTAGCAAATGCGTGATCCCACTCG 136 Query 171 CCGCTTGCATTTCTCCGATCCGGCGACATGCCGATATCCCTACTCTTCCTTACGCACCGC 230 ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 137 CCGCTTGCATTTCTCCGATCCGGCGACATTCCGATATCCCTACCCTTCCTTACGCACCGC 196 Query 231 TCCGATGCCGGACTTGTTCCGCTGCGTTAAACGCTTACGCACAAGTCGATTTCACCGCAA 290 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 197 TCCGATGCCGGACTTGTTCCGCAGCGTTAAACGCTTACGCACAAGTCGATTTCACCGCAA 256 Query 291 AGCTTTGGATCTGTCCGTTTTGTTATCAGCGTAATCATTTCCCGCCTCATTATCATGTGA 350 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 257 AGCTTTGGATCTGTCCCTTTTGTTATCAGCGTAATCATTTCCCGCCTCATTATCATGTGA 316 Query 351 TCTCTGAGACTAATCTTCCTGGTGAGCTTTATCCTCAGTACACTACTGTTGAATACACTC 410 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 317 TCTCTGAGACTAATCTTCCTGGTGAGCTTTATCCTCAGTATACTACTGTTGAATACACGC 376 Query 411 TTCCTCCGCCTGTAGC----C-A----A--CGGGGAA--GGTCTGGT-GGATC-C-GCCG 454 ||||||||||||| || | | | || |||| || | | | || | | || Sbjct 377 TTCCTCCGCCTGTTGCTGGTCAATTTGATCCGAGGAATGGGGAAGTTCCG-TCGCAGGCG 435 Query 455 GTGTTTGTGTTTGTTCTTGATACTTGTATGATTGAAGAAGAATTGGATTTTGCTAAATCG 514 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 436 GTGTTTGTGTTTGTTCTTGATACTTGTATGATTGAAGAAGAATTAGATTTTGCTAAATCG 495 Query 515 GCGCTTAAACAAGCGATTGGGTTGCTTCCGGAGAATGCTTTGGTTGGATTTGTGTCGTTT 574 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 496 GCGCTTAAACAGGCGATTGGATTGCTTCCGGAGAATGCTTTGGTTGGATTTGTGTCGTTT 555 Query 575 GGTACTCAGGCTCATGTACATGAATTGGGATTCTCTGAGATGTCTAAAGTTTTTGTTTTT 634 |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 556 GGTACTCAGGCTCATGCGCATGAATTGGGATTCTCTGAGATGTCTAAGGTTTTTGTTTTT 615 Query 635 AAAGGAGATAAAGAGATTTCGAAAGATCAGATTTTGGATCAGTTGGGGCTTGGTGGTTCT 694 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 616 AAAGGAGATAAAGAGATTTCTAAAGATCAGATTTTGGATCAGTTGGGGCTTGGAGGTTCT 675 Query 695 TCTAGGAGAGGAGGTTCTAAAGGACCTCAAAATGGCTTCCCGAGTTCTGGTTTGAATAGA 754 || |||||| | | | |||||| ||||||||||| ||||||||||||||||||||||| Sbjct 676 TCAAGGAGA-TA--TACGAAAGGAGCTCAAAATGGCGTCCCGAGTTCTGGTTTGAATAGA 732 Query 755 TTCTTGTTGCCTGCTTCCGAGTGCGAATTCACACTCAACTCGCTTTTGGATGAGCTACAA 814 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 733 TTCTTGTTGCCTGCTTCGGAGTGCGAATTCACACTCAACTCGCTTTTGGATGAGCTACAA 792 Query 815 AGTGATCAGTGGCCTGTTAAGCCAGGTCATCGGTCCCAACGATGTACAGGCGTGGCATTG 874 |||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| Sbjct 793 AGTGATCAGTGGCCTGTTCAGCCAGGTCATCGGTCCCAACGATGCACAGGTGTGGCATTG 852 Query 875 AGTGTAGCTGCAGGATTGCTTGGAGCTTGCTTGCCTGGAACTGGGGCTAGAATTGTAGCT 934 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 853 AGTGTTGCTGCAGGATTGCTTGGAGCTTGCTTGCCTGGAACTGGGGCTAGAATTGTAGCT 912 Query 935 TTGATCGGAGGTCCATGTACGGAAGGCCCTGGAACGATTGTCTCAAAGGATTTGTCGGAT 994 |||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||| Sbjct 913 TTGATCGGAGGTCCATGTACAGAAGGCCCTGGAACGATTGTCTCAAAAGATTTATCGGAT 972 Query 995 CCTGTGCGTTCTCACAAAGATTTAGATAAAGATGCCGCTCCGTACTATAAGAAGGCTGTC 1054 |||||||| |||||||||||| ||||||||||||||||||| |||||||| ||||||||| Sbjct 973 CCTGTGCGATCTCACAAAGATCTAGATAAAGATGCCGCTCCTTACTATAAAAAGGCTGTC 1032 Query 1055 AAGTTTTATGATAGCATCGCAAAGCAACTAGTCACTCAGGGTCATGTTCTAGACCTTTTT 1114 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1033 AAGTTTTATGATAGCATCGCAAAGCAACTAGTCACTCAGGGTCATGTGCTAGACCTTTTT 1092 Query 1115 GCTTCTGCACTTGATCAGGTTGGTGTTGCTGAGATGAAAGTTGCAGTTGAAAGAACTGGT 1174 ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 1093 GCTTCTGCACTTGATCAGGTTGGGGTTGCTGAGATGAAAGTTGCAGTTGAAAGATCTGGT 1152 Query 1175 GGCCTTGTTGTTCTGTCTGAAAGTTTTGGCCATTCTGTTTTCAAAGATTCCTTCAAGCGA 1234 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 1153 GGCCTTGTTGTTCTGTCTGAAAGTTTTGGCCATTCCGTATTCAAAGATTCCTTCAAGCGA 1212 Query 1235 GTATTTGAAGATGGCGATCAGGCTCTTGGCCTCTGCTTTAATGGGACGCTTGAGATCTGT 1294 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1213 GTATTTGAAGATGGCGACCAGGCTCTTGGCCTCTGCTTTAATGGGACGCTTGAGATCTGT 1272 Query 1295 TGTTCACAGGACATCAAAATTCAAGGGGCTATTGGGCCATGCTCATCATTAGAGAAGAAA 1354 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1273 TGTTCACAGGACATCAAAATTCAAGGGGCTATTGAACCATGCTCATCATTAGAGAAGAAA 1332 Query 1355 GGTGCTAGTGTTGCTGACACGGTTATCGGAGAGGGGAATACTTCTGCTTGGAGGTTGTGT 1414 || |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 1333 GGGGCTAGTGTTGCTGATACGGTTATCGGAGAAGGGAATACTTCTGCTTGGAGGTTGTGT 1392 Query 1415 GGCCTTGATAAAACTACGTGTTTGACGA-TATTTTTTGACATATCTTCAAGCGGGTCAAA 1473 |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 1393 GGCCTTGATAAAACTACGTGTTTGAC-AGTATTTTTTGACATATCTTCAAGCGGGTCAAA 1451 Query 1474 TACTCCTGGAGCTGCGAATCCACAGTTTTATTTGCAGTTTCTCACAAGTTATCAAAACCC 1533 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 1452 TACTCCTGGAGCTGCGAATCCACAGTTTTATTTGCAGTTTCTCACAATTTACCAAAACCC 1511 Query 1534 TGAAGGTCAAACATTGCTCCGGGTTACTACTGTATGCAGACAGTGGATAGACAGTGCTGT 1593 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1512 TGAAGGTCAAACATTGCTCCGAGTTACTACTGTATGCAGACAGTGGATAGACAGTGCTGT 1571 Query 1594 GAGTTCAGAGGAACTTGTGCAAGGCTTTGACCAAGAAACTGCTGCTGTGGTCATGGCTAG 1653 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1572 GAGTTCAGAGGAACTTGTGCAAGGCTTTGATCAAGAAACTGCTGCTGTGGTCATGGCTAG 1631 Query 1654 ATTAGCTTCTTTGAAAATGGAGTCAGAGG 1682 |||||||||||| |||||||||||||||| Sbjct 1632 ATTAGCTTCTTTAAAAATGGAGTCAGAGG 1660 Score = 1293 bits (700), Expect = 0.0 Identities = 812/862 (94%), Gaps = 23/862 (3%) Strand=Plus/Plus Query 1760 GAGGGATTTGATGCTACTCGCTGGTTAGATCGGAATCTCATTCGTCTTTGTTCAAAATTT 1819 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 1660 GAGGGATTTGATGCTACTCGGTGGTTAGATCGGAATCTCATTCGTCTTTGTTCAAAGTTT 1719 Query 1820 GGAGACTATAGAAAGGATGATCCAGCCTCCTTCACGCTGAATCCCTATTTTTCGTTATTT 1879 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1720 GGAGACTATAGAAAGGATGATCCAGCCTCATTCACGCTGAATCCCTATTTTTCGTTATTT 1779 Query 1880 CCTCAATTTATATTTAATCTGCGGCGATCGCAGTTTGTTCAGGTATTTAACAATAGCCCT 1939 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1780 CCTCAATTTATATTTAATCTGCGGCGATCCCAGTTTGTTCAGGTATTTAACAATAGCCCT 1839 Query 1940 GATGAAACCGCATATTTCTGCATGTTACTAAACCGGGAGAATATTTCGAATGCAACTGTC 1999 |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1840 GATGAAACCGCATACTTCTGCATGTTATTAAACCGGGAGAATATTTCGAATGCAACTGTC 1899 Query 2000 ATGATCCAACCGTCGTTAACAACATATTCATTCAATTCACCAGCTGAACCAGCTTTGCTA 2059 |||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||| Sbjct 1900 ATGATCCAACCGTCATTGACAACATATTCATTCAATTCACCAGCCGAACCAGCTTTGCTA 1959 Query 2060 GATGTGGCTTCCATTGCAGCCGATCGAATTCTTTTATTAGATGCATATTTTAGCGTTGTT 2119 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1960 GATGTGGCTTCCATTGCAGCCGATCGAATTCTTTTATTAGATGCATATTTTAGTGTTGTT 2019 Query 2120 GTCTTCCATGGAATGACTATAGCACAATGGCGAAATATGGGTTATCATCATCAGCCTGAA 2179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2020 GTCTTCCATGGAATGACTATAGCACAATGGCGAAATATGGGTTATCATCATCAGCCTGAA 2079 Query 2180 CACCAGGCTTTTGCTGAGTTATTGCAAGCTCCTCAAGAGGATTCCCAGATGATAGTCCGG 2239 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2080 CACCAGGCTTTTGCTGAGTTATTGCAAGCTCCTCAAGAGGATTCCCAGATGCTAGTCCGT 2139 Query 2240 GAACGTTTCCCTGTCCCAAGATTAGTTGTCTGTGATCAGCATGGCTCGCAGGCAAGGTTT 2299 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2140 GAGCGTTTCCCTGTCCCAAGATTAGTTGTCTGTGATCAGCACGGCTCGCAGGCAAGGTTT 2199 Query 2300 TTATTGGCGAAGCTGAATCCATCAGCGACGTACAACAATGCAAACGAGATGTCTACAGGG 2359 |||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 2200 TTATTGGCAAAGCTGAATCCATCAGCGACGTACAACAATGCAAACGAAATGTCGACAGGG 2259 Query 2360 TCAGATGTGATATTCACAGACGACGTGAGCCTTCAAGTCTTCTTTGAGCATCTCCAGAAG 2419 |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||| Sbjct 2260 TCAGATGTGATATTCACAGACGACGTTAGCCTTCAAGTCTTCTTTGAACATCTTCAGAAG 2319 Query 2420 CTGGTTGTGCAGTCTTGAGTAGTCCATTTGTTTCTTTACTTTACATTAAATTAAACTTCA 2479 ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2320 CTGGTAGTGCAGTCTTGAGTAGTCCTTTTGTTTCTTTACTTTACATTAAATTAAACTTCA 2379 Query 2480 CTGTACACGAttttttttttatcatcttactttcatctactatcattattttgttttttc 2539 | ||||| ||| || || ||||||||||||||||||||||||||| Sbjct 2380 GTTTACAC--------------CAT-TT--TT-CATCTACTATCATTATTTTGTTTTTTC 2421 Query 2540 tttgataaa-ttttctgtaacatcattacttttctgtttttgtttcAAGGACTTAAATAT 2598 ||||||||| |||| |||||||| | |||||||||||||||||||||||||||| |||| Sbjct 2422 TTTGATAAAATTTT-TGTAACAT--T-ACTTTTCTGTTTTTGTTTCAAGGACTTAGATAT 2477 Query 2599 ACAAAGTGAGAAGAGATGAAAT 2620 |||||| |||||||||| |||| Sbjct 2478 ACAAAGGGAGAAGAGATAAAAT 2499 > Ahg493493 jgi|Araly1|493493|fgenesh2_kg.7__2926__AT4G14160.1 Length=2706 Score = 1559 bits (844), Expect = 0.0 Identities = 1376/1627 (85%), Gaps = 60/1627 (4%) Strand=Plus/Plus Query 89 GAAGGAATCGATGGAGTTCGTATGACATGGAACGTCTGGCCTCATTCCAAAGCTGAAGCT 148 ||||| || ||||||||||||||||| |||||| | ||||||| | || | ||||||| Sbjct 119 GAAGGTATGGATGGAGTTCGTATGACTTGGAACCTTTGGCCTCGCACTAAGGTTGAAGCT 178 Query 149 AGCAAATGCGTGATCCCACTCGCCGCTTGC-ATTTCTCCGATCCGGCGACA-TGCCGATA 206 ||||| || ||||| || |||||||||| | |||||||||||||| || || | |||||| Sbjct 179 AGCAAGTGTGTGATTCCTCTCGCCGCTT-CAATTTCTCCGATCCGTCGTCACT-CCGATA 236 Query 207 TCCCT-ACTCTTCCTTACGCACCGCTCCGA-TGCCGGACTTGT-TCCGCTGCGT-TAAAC 262 ||||| | ||| ||||| || || || | | |||||||||||| | |||| | | ||| Sbjct 237 TCCCTGA-TCTCCCTTATGCTCCTCT-CAAGTGCCGGACTTGTGT-TGCTG-TTCTCAAC 292 Query 263 GCTTACGCACAAGTCGATTTCACCGCAAAGCTTTGGATCTGTCCGTTTTGTTATCAGCGT 322 |||| ||| | || ||||||| ||| ||| | |||||||| || ||||| ||||| | Sbjct 293 GCTTTCGCTCGTGTTGATTTCAACGCTAAGATCTGGATCTGCCCTTTTTGCCATCAGAGG 352 Query 323 AATCATTTCCCGCCTCATTATCATGT-GATCTCTGAGACTAATCTTCCTGGTGAGCTTTA 381 |||||||||||| |||||| ||| | ||||||||||| |||||| |||||||||||||| Sbjct 353 AATCATTTCCCGGTTCATTACCAT-TCGATCTCTGAGATTAATCTCCCTGGTGAGCTTTA 411 Query 382 TCCTCAGTACACTACTGTTGAATACACTCTTCCTCCGCCT-GTAGCCAACGGGGAAGGTC 440 ||||||||||||||||||||||||||| || || || || | | | | | || Sbjct 412 TCCTCAGTACACTACTGTTGAATACAC-GTT--GCCAACTGGT-G-C--TGCTG-A--TC 461 Query 441 TGGTGGATCCGCCGGTGTTTGTGTTTGTTCTTGATACTTGTATGATTGAAGAAGAATT-G 499 |||| |||||| ||||||||||||||||| ||||| ||||||||||| |||||||| | Sbjct 462 AGGTGCCTCCGCCTGTGTTTGTGTTTGTTCTCGATACGTGTATGATTGAGGAAGAATTGG 521 Query 500 GATTTTGCTAAATCGGCGCTTAAACAAGCGATTGGGTTGCTTCCGGAGAATGCTTTGGTT 559 || | ||| |||||||||||||| || ||||| ||||||||||||||||||||||||||| Sbjct 522 GA-TATGCCAAATCGGCGCTTAAGCAGGCGATCGGGTTGCTTCCGGAGAATGCTTTGGTT 580 Query 560 GGATTTGTGTCGTTTGGTACTCAGGCTCATGTACATGAATTGGGATTCTCTGAGATGTCT 619 || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 581 GGGTTTGTGTCGTTTGGTACTCAGGCTCATGTTCATGAATTGGGGTTCTCTGAGATGTCT 640 Query 620 AAAGTTTTTGTTTTTAAAGG-AGATAAAG-AGATTTCGAAAGATCAGATTTTGGATCAGT 677 ||||||||||| |||||||| | |||||| || | | || ||||| ||||||||||||| Sbjct 641 AAAGTTTTTGTCTTTAAAGGCA-ATAAAGAAG-TCACCAAGGATCAAATTTTGGATCAGT 698 Query 678 TGGGGCTT-GGTGGTTCTTCTAGGAGAG----GA------GG-TT-CTAAAGGACCTCAA 724 |||||||| ||| ||| || ||||||| | || || |||||||| | ||| Sbjct 699 TGGGGCTTGGGT-CTTCCTCAAGGAGAGCTCCTACTTCTGGGTTTCCTAAAGGAGCGCAA 757 Query 725 AATGGCTTCCCGAGTTCTGGT-TTGAATAGATTCTTGTTGCCTGCTTCCGAGTGCGAATT 783 || || |||| |||||| ||| ||| | |||||| ||||||| ||||| |||||||||| Sbjct 758 AACGGATTCCAGAGTTCCGGTGTTG-ACAGATTCCTGTTGCCCGCTTCGGAGTGCGAATA 816 Query 784 CACACTCAACTCGCTTTTGGATGAGCTACAAAGTGATCAGTGGCCTGTTAAGCCAGGTCA 843 |||||| ||| ||||||||||||||| ||| || |||||||||||| |||||||||| Sbjct 817 CACACTGGACTTGCTTTTGGATGAGCTCCAATCAGACCAGTGGCCTGTTCAGCCAGGTCA 876 Query 844 TCGGT-CCCAACGATGTACAGGCGTGGCATTGAGTGTAGCTGCAGGATTGCTTGGAGCTT 902 || || |||||||||| ||||| || |||||||||||||||||||||||||||||||||| Sbjct 877 TC-GTCCCCAACGATGCACAGGGGTTGCATTGAGTGTAGCTGCAGGATTGCTTGGAGCTT 935 Query 903 GCTTGCCTGGAACTGGGGCTAGAATTGTAGCTTTGATCGGAGGTCCATGTACGGAAGGCC 962 |||| |||||||||||||||||||||||||||||| | |||||||||||||| || |||| Sbjct 936 GCTTACCTGGAACTGGGGCTAGAATTGTAGCTTTGGTTGGAGGTCCATGTACAGAGGGCC 995 Query 963 CTGGAACGATTGTCTCAAAGGATTTGTCGGATCCTGTGCGTTCTCACAAAGATTTAGATA 1022 ||||||||||| |||||||||||||||| ||||||||||| || ||||||||| |||||| Sbjct 996 CTGGAACGATTATCTCAAAGGATTTGTCAGATCCTGTGCGCTCCCACAAAGATCTAGATA 1055 Query 1023 AAGATGCCGCTCCGTACTATAAGAAGGCTGTCAAGTTTTATGATAGCATCGCAAAGCAAC 1082 ||||||| ||||| || ||||| || |||||||||||||||||||| || |||||||| | Sbjct 1056 AAGATGCTGCTCCTTATTATAAAAAAGCTGTCAAGTTTTATGATAGTATTGCAAAGCAGC 1115 Query 1083 TAGTCACTCAGGGTCATGT-TCTAGACCTTTTTGCTTCTGCACTTGATCAGGTTGGTGTT 1141 | ||| ||||||||||||| | |||||||||| || |||||||||||||||||||| ||| Sbjct 1116 TTGTCGCTCAGGGTCATGTGT-TAGACCTTTTCGCCTCTGCACTTGATCAGGTTGGGGTT 1174 Query 1142 GCTGAGATGAAAGTTGCAGTTGAAAGAACTGGTGGCCTTGTTGTTCTGTCTGAAAGTTTT 1201 ||||| |||||||| || |||||||| || ||||| || ||||||||||||||||||||| Sbjct 1175 GCTGAAATGAAAGTAGCCGTTGAAAGTACCGGTGGTCTCGTTGTTCTGTCTGAAAGTTTT 1234 Query 1202 GGCCATTCTGT-TTTCAAAGATTCCTTCAAGCGAGTATTTGAAGATGGCGATCAGGCTCT 1260 ||||||||||| ||| ||||||||||||||| | || |||||||||||||| ||| |||| Sbjct 1235 GGCCATTCTGTATTT-AAAGATTCCTTCAAGAGGGTGTTTGAAGATGGCGAGCAGTCTCT 1293 Query 1261 TGGCCTCTGCTTTAATGGGACGCTTGAGATCTGTTGTTCACAGGACATCAAAATTCAAGG 1320 ||| |||||||| ||||| |||||||||||| ||||||| | ||||||||||||||||| Sbjct 1294 TGGTCTCTGCTTCAATGGCACGCTTGAGATCAATTGTTCAAAAGACATCAAAATTCAAGG 1353 Query 1321 GGCTATTGGGCCATGCTCATCATTAGAGAAGAAAGGTGCTAGTGTTGCTGACACGGTTAT 1380 || ||| ||||| |||||||||||||| ||||||||| | | |||||| ||||| || || Sbjct 1354 GGTTATCGGGCCTTGCTCATCATTAGAAAAGAAAGGTCCCAATGTTGCCGACACAGTCAT 1413 Query 1381 CGGAGAGGGGAATACTTCTGCTTGGAGGTTGTGTGGCCTTGATAAAACTACGTGTTTGAC 1440 |||||||||||||| |||||||| |||||||||||| || || | ||| || ||||| Sbjct 1414 TGGAGAGGGGAATACCAGTGCTTGGAAGTTGTGTGGCCTCGACAAGAGTACCTGCTTGAC 1473 Query 1441 -GATATTTTTTGA-CATATCTTCAAGCGGGTCAAATACTCCTGGAGCTGCGAATCCACAG 1498 | |||| ||||| | ||||||||| |||||||||| |||||||||||| ||||| ||| Sbjct 1474 TG-TATTCTTTGATC-TATCTTCAACCGGGTCAAATGCTCCTGGAGCTGTAAATCCTCAG 1531 Query 1499 TTTTATTTGCAGTTTCTCACAAGTTATCAAAACCCTGAAGGTCAAACATTGCTCCGGGTT 1558 || |||||||||||| |||||||||| ||||||||||||||| ||| |||||||||||| Sbjct 1532 TTGTATTTGCAGTTTGTCACAAGTTACCAAAACCCTGAAGGTAAAAGTTTGCTCCGGGTT 1591 Query 1559 ACTACTGTATGCAGACAGTGGATAGACAGTGCTGTGAGTTCAGAGG-AA--CTTGTGCAA 1615 || |||||| |||||||||| | || | ||||||||| |||||| || ||||||||| Sbjct 1592 ACAACTGTAACCAGACAGTGGGTGGATACTGCTGTGAGCACAGAGGTAAAACTTGTGCAA 1651 Query 1616 GGCTTTGACCAAGAAACTGCTGCTGTGGTCATGGCTAGATTAGCTTCTTTGAAAATGGAG 1675 ||||||||||||||||||||||||||||| ||||| |||||| |||| || |||||||| Sbjct 1652 GGCTTTGACCAAGAAACTGCTGCTGTGGTTATGGCAAGATTAACTTCCTTAAAAATGGAA 1711 Query 1676 TCAGAGG 1682 |||||| Sbjct 1712 ACAGAGG 1718 Score = 817 bits (442), Expect = 0.0 Identities = 605/684 (88%), Gaps = 10/684 (1%) Strand=Plus/Plus Query 1760 GAGGGATTTGATGCTACTCGCTGGTTAGATCGGAATCTCATTCGTCTTTGTTCAAAATTT 1819 |||||||||||||||||||| ||| ||||||||| |||||||||||| |||||||||||| Sbjct 1718 GAGGGATTTGATGCTACTCGGTGGCTAGATCGGACTCTCATTCGTCTGTGTTCAAAATTT 1777 Query 1820 GGAGACTATAGAAAGGATGATCCAGCCTCCTTCACGCTGAATCCCTATTTTTCGTTATTT 1879 || || |||||||||||||||||| |||| || |||||||||||||||||||| || || Sbjct 1778 GGTGAATATAGAAAGGATGATCCAACCTCGTTTACGCTGAATCCCTATTTTTCATTGTTC 1837 Query 1880 CCTCAATTTATATTTAATC-TGCGGCGATCGCAGTTTGTTCAGGTATTTAACAATAGCCC 1938 |||||||| || ||||| | ||||||| || |||||||||||||| |||||||| || || Sbjct 1838 CCTCAATTCATGTTTAA-CTTGCGGCGGTCACAGTTTGTTCAGGTCTTTAACAACAGTCC 1896 Query 1939 TGATGAAACCGCATATTTCTGCATGTTACTAAACCGGGAGAATATTTCGAATGCAACTGT 1998 ||||||||||||||| ||| ||||| | ||||||||||| |||||||| ||||||||||| Sbjct 1897 TGATGAAACCGCATACTTCCGCATGCTGCTAAACCGGGAAAATATTTCAAATGCAACTGT 1956 Query 1999 CATGATCCAACCGTCGT-TAACAACATATTCATTCAATTCACCAGCTGAACCAGCTTTGC 2057 |||||||||||| || | | || |||||||||||||| ||||| || | |||||||||| Sbjct 1957 CATGATCCAACCATC-TCTGACGTCATATTCATTCAATGCACCACCTCAGCCAGCTTTGC 2015 Query 2058 TAGATGTGGCTTCCATTGCAGCCGATCGA-ATTCTTTTATTAGATGCATATTTTAGCGTT 2116 | |||||||||||||||||||| || | | |||||| ||||||||||||||||||| ||| Sbjct 2016 TGGATGTGGCTTCCATTGCAGCTGA-CAAGATTCTTCTATTAGATGCATATTTTAGTGTT 2074 Query 2117 GTTGTCTTCCATGGAATGACTATAGCACAATGGCGAAATATGGGTTATCATCATCAGCCT 2176 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 2075 GTTGTCTTCCATGGAATGACTATAGCGCAATGGCGAAACATGGGTTATCATCATCAGCCT 2134 Query 2177 GAACACCAGGCTTTTGCTGAGTTATTGCAAGCTCCTCAAGAGGATTCCCAGATGATAGTC 2236 ||||| |||| |||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 2135 GAACATGAGGCCTTTGCTCAGTTATTGCAAGCTCCTCAAGAGGATTCCCAGATGTTAGTC 2194 Query 2237 CGGGAACGTTTCCCTGTCCCAAGATTAGTTGTCTGTGATCAGCATGGCTCGCAGGCAAGG 2296 ||||| |||||||| ||||| ||||||||||| |||||||| ||||| || ||||||||| Sbjct 2195 CGGGAGCGTTTCCCAGTCCCGAGATTAGTTGTGTGTGATCAACATGGATCACAGGCAAGG 2254 Query 2297 TTTTTATTGGCGAAGCTGAATCCATCAGCGACGTACAACAATGCAAACGAGATGTCTA-C 2355 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| | | Sbjct 2255 TTTTTATTGGCTAAGCTGAATCCATCAGCGACTTACAACAATGCAAACGAGATGTC-AGC 2313 Query 2356 AGGGTCAGATGTGATATTCACAGACGACGTGAGCCTTCAAGTCTTCTTTGAGCATCTC-C 2414 |||||||| | || ||||| ||||| |||||||| |||||||| ||||||||||| | Sbjct 2314 TGGGTCAGACATAATCTTCACTGACGATGTGAGCCTGCAAGTCTTTTTTGAGCATCTTTC 2373 Query 2415 AGAAGCTGGTTGTGCAGTCTTGAG 2438 ||| |||| ||||| || |||| Sbjct 2374 -GAAACTGGCCGTGCAATCCTGAG 2396 > Ahg314991 jgi|Araly1|314991|fgenesh1_pm.C_scaffold_2000024 Length=210 Score = 327 bits (177), Expect = 2e-88 Identities = 199/210 (95%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 2228 ATGATAGTCCGGGAACGTTTCCCTGTCCCAAGATTAGTTGTCTGTGATCAGCATGGCTCG 2287 ||| ||||||| || |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1 ATGCTAGTCCGTGAGCGTTTCCCTGTCCCAAGATTAGTTGTCTGTGATCAGCACGGCTCG 60 Query 2288 CAGGCAAGGTTTTTATTGGCGAAGCTGAATCCATCAGCGACGTACAACAATGCAAACGAG 2347 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 61 CAGGCAAGGTTTTTATTGGCAAAGCTGAATCCATCAGCGACGTACAACAATGCAAACGAA 120 Query 2348 ATGTCTACAGGGTCAGATGTGATATTCACAGACGACGTGAGCCTTCAAGTCTTCTTTGAG 2407 ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 121 ATGTCGACAGGGTCAGATGTGATATTCACAGACGACGTTAGCCTTCAAGTCTTCTTTGAA 180 Query 2408 CATCTCCAGAAGCTGGTTGTGCAGTCTTGA 2437 ||||| ||||||||||| |||||||||||| Sbjct 181 CATCTTCAGAAGCTGGTAGTGCAGTCTTGA 210 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 99796441900 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5