BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23660.2
Length=2646
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479878 jgi|Araly1|479878|fgenesh2_kg.3__2579__AT3G23660.1 2545 0.0
Ahg493493 jgi|Araly1|493493|fgenesh2_kg.7__2926__AT4G14160.1 1559 0.0
Ahg314991 jgi|Araly1|314991|fgenesh1_pm.C_scaffold_2000024 327 2e-88
> Ahg479878 jgi|Araly1|479878|fgenesh2_kg.3__2579__AT3G23660.1
Length=2499
Score = 2545 bits (1378), Expect = 0.0
Identities = 1563/1649 (95%), Gaps = 25/1649 (2%)
Strand=Plus/Plus
Query 52 CTTCCAACGAATGGCGGAGACTGCGAATACAGATCTAGAAGGAATCGAT-GGAGTTCGTA 110
|||||||| |||||||||||| ||||||||||||||||||||||||| | ||||||||||
Sbjct 19 CTTCCAAC-AATGGCGGAGACGGCGAATACAGATCTAGAAGGAATCG-TCGGAGTTCGTA 76
Query 111 TGACATGGAACGTCTGGCCTCATTCCAAAGCTGAAGCTAGCAAATGCGTGATCCCACTCG 170
||||||||||||| ||||||| ||| |||| |||||||||||||||||||||||||||||
Sbjct 77 TGACATGGAACGTTTGGCCTCGTTCTAAAGTTGAAGCTAGCAAATGCGTGATCCCACTCG 136
Query 171 CCGCTTGCATTTCTCCGATCCGGCGACATGCCGATATCCCTACTCTTCCTTACGCACCGC 230
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 137 CCGCTTGCATTTCTCCGATCCGGCGACATTCCGATATCCCTACCCTTCCTTACGCACCGC 196
Query 231 TCCGATGCCGGACTTGTTCCGCTGCGTTAAACGCTTACGCACAAGTCGATTTCACCGCAA 290
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 197 TCCGATGCCGGACTTGTTCCGCAGCGTTAAACGCTTACGCACAAGTCGATTTCACCGCAA 256
Query 291 AGCTTTGGATCTGTCCGTTTTGTTATCAGCGTAATCATTTCCCGCCTCATTATCATGTGA 350
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 AGCTTTGGATCTGTCCCTTTTGTTATCAGCGTAATCATTTCCCGCCTCATTATCATGTGA 316
Query 351 TCTCTGAGACTAATCTTCCTGGTGAGCTTTATCCTCAGTACACTACTGTTGAATACACTC 410
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 317 TCTCTGAGACTAATCTTCCTGGTGAGCTTTATCCTCAGTATACTACTGTTGAATACACGC 376
Query 411 TTCCTCCGCCTGTAGC----C-A----A--CGGGGAA--GGTCTGGT-GGATC-C-GCCG 454
||||||||||||| || | | | || |||| || | | | || | | ||
Sbjct 377 TTCCTCCGCCTGTTGCTGGTCAATTTGATCCGAGGAATGGGGAAGTTCCG-TCGCAGGCG 435
Query 455 GTGTTTGTGTTTGTTCTTGATACTTGTATGATTGAAGAAGAATTGGATTTTGCTAAATCG 514
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 436 GTGTTTGTGTTTGTTCTTGATACTTGTATGATTGAAGAAGAATTAGATTTTGCTAAATCG 495
Query 515 GCGCTTAAACAAGCGATTGGGTTGCTTCCGGAGAATGCTTTGGTTGGATTTGTGTCGTTT 574
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 496 GCGCTTAAACAGGCGATTGGATTGCTTCCGGAGAATGCTTTGGTTGGATTTGTGTCGTTT 555
Query 575 GGTACTCAGGCTCATGTACATGAATTGGGATTCTCTGAGATGTCTAAAGTTTTTGTTTTT 634
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 556 GGTACTCAGGCTCATGCGCATGAATTGGGATTCTCTGAGATGTCTAAGGTTTTTGTTTTT 615
Query 635 AAAGGAGATAAAGAGATTTCGAAAGATCAGATTTTGGATCAGTTGGGGCTTGGTGGTTCT 694
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 616 AAAGGAGATAAAGAGATTTCTAAAGATCAGATTTTGGATCAGTTGGGGCTTGGAGGTTCT 675
Query 695 TCTAGGAGAGGAGGTTCTAAAGGACCTCAAAATGGCTTCCCGAGTTCTGGTTTGAATAGA 754
|| |||||| | | | |||||| ||||||||||| |||||||||||||||||||||||
Sbjct 676 TCAAGGAGA-TA--TACGAAAGGAGCTCAAAATGGCGTCCCGAGTTCTGGTTTGAATAGA 732
Query 755 TTCTTGTTGCCTGCTTCCGAGTGCGAATTCACACTCAACTCGCTTTTGGATGAGCTACAA 814
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 TTCTTGTTGCCTGCTTCGGAGTGCGAATTCACACTCAACTCGCTTTTGGATGAGCTACAA 792
Query 815 AGTGATCAGTGGCCTGTTAAGCCAGGTCATCGGTCCCAACGATGTACAGGCGTGGCATTG 874
|||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||
Sbjct 793 AGTGATCAGTGGCCTGTTCAGCCAGGTCATCGGTCCCAACGATGCACAGGTGTGGCATTG 852
Query 875 AGTGTAGCTGCAGGATTGCTTGGAGCTTGCTTGCCTGGAACTGGGGCTAGAATTGTAGCT 934
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 AGTGTTGCTGCAGGATTGCTTGGAGCTTGCTTGCCTGGAACTGGGGCTAGAATTGTAGCT 912
Query 935 TTGATCGGAGGTCCATGTACGGAAGGCCCTGGAACGATTGTCTCAAAGGATTTGTCGGAT 994
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 913 TTGATCGGAGGTCCATGTACAGAAGGCCCTGGAACGATTGTCTCAAAAGATTTATCGGAT 972
Query 995 CCTGTGCGTTCTCACAAAGATTTAGATAAAGATGCCGCTCCGTACTATAAGAAGGCTGTC 1054
|||||||| |||||||||||| ||||||||||||||||||| |||||||| |||||||||
Sbjct 973 CCTGTGCGATCTCACAAAGATCTAGATAAAGATGCCGCTCCTTACTATAAAAAGGCTGTC 1032
Query 1055 AAGTTTTATGATAGCATCGCAAAGCAACTAGTCACTCAGGGTCATGTTCTAGACCTTTTT 1114
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1033 AAGTTTTATGATAGCATCGCAAAGCAACTAGTCACTCAGGGTCATGTGCTAGACCTTTTT 1092
Query 1115 GCTTCTGCACTTGATCAGGTTGGTGTTGCTGAGATGAAAGTTGCAGTTGAAAGAACTGGT 1174
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1093 GCTTCTGCACTTGATCAGGTTGGGGTTGCTGAGATGAAAGTTGCAGTTGAAAGATCTGGT 1152
Query 1175 GGCCTTGTTGTTCTGTCTGAAAGTTTTGGCCATTCTGTTTTCAAAGATTCCTTCAAGCGA 1234
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1153 GGCCTTGTTGTTCTGTCTGAAAGTTTTGGCCATTCCGTATTCAAAGATTCCTTCAAGCGA 1212
Query 1235 GTATTTGAAGATGGCGATCAGGCTCTTGGCCTCTGCTTTAATGGGACGCTTGAGATCTGT 1294
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 GTATTTGAAGATGGCGACCAGGCTCTTGGCCTCTGCTTTAATGGGACGCTTGAGATCTGT 1272
Query 1295 TGTTCACAGGACATCAAAATTCAAGGGGCTATTGGGCCATGCTCATCATTAGAGAAGAAA 1354
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1273 TGTTCACAGGACATCAAAATTCAAGGGGCTATTGAACCATGCTCATCATTAGAGAAGAAA 1332
Query 1355 GGTGCTAGTGTTGCTGACACGGTTATCGGAGAGGGGAATACTTCTGCTTGGAGGTTGTGT 1414
|| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1333 GGGGCTAGTGTTGCTGATACGGTTATCGGAGAAGGGAATACTTCTGCTTGGAGGTTGTGT 1392
Query 1415 GGCCTTGATAAAACTACGTGTTTGACGA-TATTTTTTGACATATCTTCAAGCGGGTCAAA 1473
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1393 GGCCTTGATAAAACTACGTGTTTGAC-AGTATTTTTTGACATATCTTCAAGCGGGTCAAA 1451
Query 1474 TACTCCTGGAGCTGCGAATCCACAGTTTTATTTGCAGTTTCTCACAAGTTATCAAAACCC 1533
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1452 TACTCCTGGAGCTGCGAATCCACAGTTTTATTTGCAGTTTCTCACAATTTACCAAAACCC 1511
Query 1534 TGAAGGTCAAACATTGCTCCGGGTTACTACTGTATGCAGACAGTGGATAGACAGTGCTGT 1593
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1512 TGAAGGTCAAACATTGCTCCGAGTTACTACTGTATGCAGACAGTGGATAGACAGTGCTGT 1571
Query 1594 GAGTTCAGAGGAACTTGTGCAAGGCTTTGACCAAGAAACTGCTGCTGTGGTCATGGCTAG 1653
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1572 GAGTTCAGAGGAACTTGTGCAAGGCTTTGATCAAGAAACTGCTGCTGTGGTCATGGCTAG 1631
Query 1654 ATTAGCTTCTTTGAAAATGGAGTCAGAGG 1682
|||||||||||| ||||||||||||||||
Sbjct 1632 ATTAGCTTCTTTAAAAATGGAGTCAGAGG 1660
Score = 1293 bits (700), Expect = 0.0
Identities = 812/862 (94%), Gaps = 23/862 (3%)
Strand=Plus/Plus
Query 1760 GAGGGATTTGATGCTACTCGCTGGTTAGATCGGAATCTCATTCGTCTTTGTTCAAAATTT 1819
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1660 GAGGGATTTGATGCTACTCGGTGGTTAGATCGGAATCTCATTCGTCTTTGTTCAAAGTTT 1719
Query 1820 GGAGACTATAGAAAGGATGATCCAGCCTCCTTCACGCTGAATCCCTATTTTTCGTTATTT 1879
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1720 GGAGACTATAGAAAGGATGATCCAGCCTCATTCACGCTGAATCCCTATTTTTCGTTATTT 1779
Query 1880 CCTCAATTTATATTTAATCTGCGGCGATCGCAGTTTGTTCAGGTATTTAACAATAGCCCT 1939
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1780 CCTCAATTTATATTTAATCTGCGGCGATCCCAGTTTGTTCAGGTATTTAACAATAGCCCT 1839
Query 1940 GATGAAACCGCATATTTCTGCATGTTACTAAACCGGGAGAATATTTCGAATGCAACTGTC 1999
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1840 GATGAAACCGCATACTTCTGCATGTTATTAAACCGGGAGAATATTTCGAATGCAACTGTC 1899
Query 2000 ATGATCCAACCGTCGTTAACAACATATTCATTCAATTCACCAGCTGAACCAGCTTTGCTA 2059
|||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1900 ATGATCCAACCGTCATTGACAACATATTCATTCAATTCACCAGCCGAACCAGCTTTGCTA 1959
Query 2060 GATGTGGCTTCCATTGCAGCCGATCGAATTCTTTTATTAGATGCATATTTTAGCGTTGTT 2119
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1960 GATGTGGCTTCCATTGCAGCCGATCGAATTCTTTTATTAGATGCATATTTTAGTGTTGTT 2019
Query 2120 GTCTTCCATGGAATGACTATAGCACAATGGCGAAATATGGGTTATCATCATCAGCCTGAA 2179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2020 GTCTTCCATGGAATGACTATAGCACAATGGCGAAATATGGGTTATCATCATCAGCCTGAA 2079
Query 2180 CACCAGGCTTTTGCTGAGTTATTGCAAGCTCCTCAAGAGGATTCCCAGATGATAGTCCGG 2239
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2080 CACCAGGCTTTTGCTGAGTTATTGCAAGCTCCTCAAGAGGATTCCCAGATGCTAGTCCGT 2139
Query 2240 GAACGTTTCCCTGTCCCAAGATTAGTTGTCTGTGATCAGCATGGCTCGCAGGCAAGGTTT 2299
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2140 GAGCGTTTCCCTGTCCCAAGATTAGTTGTCTGTGATCAGCACGGCTCGCAGGCAAGGTTT 2199
Query 2300 TTATTGGCGAAGCTGAATCCATCAGCGACGTACAACAATGCAAACGAGATGTCTACAGGG 2359
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 2200 TTATTGGCAAAGCTGAATCCATCAGCGACGTACAACAATGCAAACGAAATGTCGACAGGG 2259
Query 2360 TCAGATGTGATATTCACAGACGACGTGAGCCTTCAAGTCTTCTTTGAGCATCTCCAGAAG 2419
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 2260 TCAGATGTGATATTCACAGACGACGTTAGCCTTCAAGTCTTCTTTGAACATCTTCAGAAG 2319
Query 2420 CTGGTTGTGCAGTCTTGAGTAGTCCATTTGTTTCTTTACTTTACATTAAATTAAACTTCA 2479
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2320 CTGGTAGTGCAGTCTTGAGTAGTCCTTTTGTTTCTTTACTTTACATTAAATTAAACTTCA 2379
Query 2480 CTGTACACGAttttttttttatcatcttactttcatctactatcattattttgttttttc 2539
| ||||| ||| || || |||||||||||||||||||||||||||
Sbjct 2380 GTTTACAC--------------CAT-TT--TT-CATCTACTATCATTATTTTGTTTTTTC 2421
Query 2540 tttgataaa-ttttctgtaacatcattacttttctgtttttgtttcAAGGACTTAAATAT 2598
||||||||| |||| |||||||| | |||||||||||||||||||||||||||| ||||
Sbjct 2422 TTTGATAAAATTTT-TGTAACAT--T-ACTTTTCTGTTTTTGTTTCAAGGACTTAGATAT 2477
Query 2599 ACAAAGTGAGAAGAGATGAAAT 2620
|||||| |||||||||| ||||
Sbjct 2478 ACAAAGGGAGAAGAGATAAAAT 2499
> Ahg493493 jgi|Araly1|493493|fgenesh2_kg.7__2926__AT4G14160.1
Length=2706
Score = 1559 bits (844), Expect = 0.0
Identities = 1376/1627 (85%), Gaps = 60/1627 (4%)
Strand=Plus/Plus
Query 89 GAAGGAATCGATGGAGTTCGTATGACATGGAACGTCTGGCCTCATTCCAAAGCTGAAGCT 148
||||| || ||||||||||||||||| |||||| | ||||||| | || | |||||||
Sbjct 119 GAAGGTATGGATGGAGTTCGTATGACTTGGAACCTTTGGCCTCGCACTAAGGTTGAAGCT 178
Query 149 AGCAAATGCGTGATCCCACTCGCCGCTTGC-ATTTCTCCGATCCGGCGACA-TGCCGATA 206
||||| || ||||| || |||||||||| | |||||||||||||| || || | ||||||
Sbjct 179 AGCAAGTGTGTGATTCCTCTCGCCGCTT-CAATTTCTCCGATCCGTCGTCACT-CCGATA 236
Query 207 TCCCT-ACTCTTCCTTACGCACCGCTCCGA-TGCCGGACTTGT-TCCGCTGCGT-TAAAC 262
||||| | ||| ||||| || || || | | |||||||||||| | |||| | | |||
Sbjct 237 TCCCTGA-TCTCCCTTATGCTCCTCT-CAAGTGCCGGACTTGTGT-TGCTG-TTCTCAAC 292
Query 263 GCTTACGCACAAGTCGATTTCACCGCAAAGCTTTGGATCTGTCCGTTTTGTTATCAGCGT 322
|||| ||| | || ||||||| ||| ||| | |||||||| || ||||| ||||| |
Sbjct 293 GCTTTCGCTCGTGTTGATTTCAACGCTAAGATCTGGATCTGCCCTTTTTGCCATCAGAGG 352
Query 323 AATCATTTCCCGCCTCATTATCATGT-GATCTCTGAGACTAATCTTCCTGGTGAGCTTTA 381
|||||||||||| |||||| ||| | ||||||||||| |||||| ||||||||||||||
Sbjct 353 AATCATTTCCCGGTTCATTACCAT-TCGATCTCTGAGATTAATCTCCCTGGTGAGCTTTA 411
Query 382 TCCTCAGTACACTACTGTTGAATACACTCTTCCTCCGCCT-GTAGCCAACGGGGAAGGTC 440
||||||||||||||||||||||||||| || || || || | | | | | ||
Sbjct 412 TCCTCAGTACACTACTGTTGAATACAC-GTT--GCCAACTGGT-G-C--TGCTG-A--TC 461
Query 441 TGGTGGATCCGCCGGTGTTTGTGTTTGTTCTTGATACTTGTATGATTGAAGAAGAATT-G 499
|||| |||||| ||||||||||||||||| ||||| ||||||||||| |||||||| |
Sbjct 462 AGGTGCCTCCGCCTGTGTTTGTGTTTGTTCTCGATACGTGTATGATTGAGGAAGAATTGG 521
Query 500 GATTTTGCTAAATCGGCGCTTAAACAAGCGATTGGGTTGCTTCCGGAGAATGCTTTGGTT 559
|| | ||| |||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 522 GA-TATGCCAAATCGGCGCTTAAGCAGGCGATCGGGTTGCTTCCGGAGAATGCTTTGGTT 580
Query 560 GGATTTGTGTCGTTTGGTACTCAGGCTCATGTACATGAATTGGGATTCTCTGAGATGTCT 619
|| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 581 GGGTTTGTGTCGTTTGGTACTCAGGCTCATGTTCATGAATTGGGGTTCTCTGAGATGTCT 640
Query 620 AAAGTTTTTGTTTTTAAAGG-AGATAAAG-AGATTTCGAAAGATCAGATTTTGGATCAGT 677
||||||||||| |||||||| | |||||| || | | || ||||| |||||||||||||
Sbjct 641 AAAGTTTTTGTCTTTAAAGGCA-ATAAAGAAG-TCACCAAGGATCAAATTTTGGATCAGT 698
Query 678 TGGGGCTT-GGTGGTTCTTCTAGGAGAG----GA------GG-TT-CTAAAGGACCTCAA 724
|||||||| ||| ||| || ||||||| | || || |||||||| | |||
Sbjct 699 TGGGGCTTGGGT-CTTCCTCAAGGAGAGCTCCTACTTCTGGGTTTCCTAAAGGAGCGCAA 757
Query 725 AATGGCTTCCCGAGTTCTGGT-TTGAATAGATTCTTGTTGCCTGCTTCCGAGTGCGAATT 783
|| || |||| |||||| ||| ||| | |||||| ||||||| ||||| ||||||||||
Sbjct 758 AACGGATTCCAGAGTTCCGGTGTTG-ACAGATTCCTGTTGCCCGCTTCGGAGTGCGAATA 816
Query 784 CACACTCAACTCGCTTTTGGATGAGCTACAAAGTGATCAGTGGCCTGTTAAGCCAGGTCA 843
|||||| ||| ||||||||||||||| ||| || |||||||||||| ||||||||||
Sbjct 817 CACACTGGACTTGCTTTTGGATGAGCTCCAATCAGACCAGTGGCCTGTTCAGCCAGGTCA 876
Query 844 TCGGT-CCCAACGATGTACAGGCGTGGCATTGAGTGTAGCTGCAGGATTGCTTGGAGCTT 902
|| || |||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 877 TC-GTCCCCAACGATGCACAGGGGTTGCATTGAGTGTAGCTGCAGGATTGCTTGGAGCTT 935
Query 903 GCTTGCCTGGAACTGGGGCTAGAATTGTAGCTTTGATCGGAGGTCCATGTACGGAAGGCC 962
|||| |||||||||||||||||||||||||||||| | |||||||||||||| || ||||
Sbjct 936 GCTTACCTGGAACTGGGGCTAGAATTGTAGCTTTGGTTGGAGGTCCATGTACAGAGGGCC 995
Query 963 CTGGAACGATTGTCTCAAAGGATTTGTCGGATCCTGTGCGTTCTCACAAAGATTTAGATA 1022
||||||||||| |||||||||||||||| ||||||||||| || ||||||||| ||||||
Sbjct 996 CTGGAACGATTATCTCAAAGGATTTGTCAGATCCTGTGCGCTCCCACAAAGATCTAGATA 1055
Query 1023 AAGATGCCGCTCCGTACTATAAGAAGGCTGTCAAGTTTTATGATAGCATCGCAAAGCAAC 1082
||||||| ||||| || ||||| || |||||||||||||||||||| || |||||||| |
Sbjct 1056 AAGATGCTGCTCCTTATTATAAAAAAGCTGTCAAGTTTTATGATAGTATTGCAAAGCAGC 1115
Query 1083 TAGTCACTCAGGGTCATGT-TCTAGACCTTTTTGCTTCTGCACTTGATCAGGTTGGTGTT 1141
| ||| ||||||||||||| | |||||||||| || |||||||||||||||||||| |||
Sbjct 1116 TTGTCGCTCAGGGTCATGTGT-TAGACCTTTTCGCCTCTGCACTTGATCAGGTTGGGGTT 1174
Query 1142 GCTGAGATGAAAGTTGCAGTTGAAAGAACTGGTGGCCTTGTTGTTCTGTCTGAAAGTTTT 1201
||||| |||||||| || |||||||| || ||||| || |||||||||||||||||||||
Sbjct 1175 GCTGAAATGAAAGTAGCCGTTGAAAGTACCGGTGGTCTCGTTGTTCTGTCTGAAAGTTTT 1234
Query 1202 GGCCATTCTGT-TTTCAAAGATTCCTTCAAGCGAGTATTTGAAGATGGCGATCAGGCTCT 1260
||||||||||| ||| ||||||||||||||| | || |||||||||||||| ||| ||||
Sbjct 1235 GGCCATTCTGTATTT-AAAGATTCCTTCAAGAGGGTGTTTGAAGATGGCGAGCAGTCTCT 1293
Query 1261 TGGCCTCTGCTTTAATGGGACGCTTGAGATCTGTTGTTCACAGGACATCAAAATTCAAGG 1320
||| |||||||| ||||| |||||||||||| ||||||| | |||||||||||||||||
Sbjct 1294 TGGTCTCTGCTTCAATGGCACGCTTGAGATCAATTGTTCAAAAGACATCAAAATTCAAGG 1353
Query 1321 GGCTATTGGGCCATGCTCATCATTAGAGAAGAAAGGTGCTAGTGTTGCTGACACGGTTAT 1380
|| ||| ||||| |||||||||||||| ||||||||| | | |||||| ||||| || ||
Sbjct 1354 GGTTATCGGGCCTTGCTCATCATTAGAAAAGAAAGGTCCCAATGTTGCCGACACAGTCAT 1413
Query 1381 CGGAGAGGGGAATACTTCTGCTTGGAGGTTGTGTGGCCTTGATAAAACTACGTGTTTGAC 1440
|||||||||||||| |||||||| |||||||||||| || || | ||| || |||||
Sbjct 1414 TGGAGAGGGGAATACCAGTGCTTGGAAGTTGTGTGGCCTCGACAAGAGTACCTGCTTGAC 1473
Query 1441 -GATATTTTTTGA-CATATCTTCAAGCGGGTCAAATACTCCTGGAGCTGCGAATCCACAG 1498
| |||| ||||| | ||||||||| |||||||||| |||||||||||| ||||| |||
Sbjct 1474 TG-TATTCTTTGATC-TATCTTCAACCGGGTCAAATGCTCCTGGAGCTGTAAATCCTCAG 1531
Query 1499 TTTTATTTGCAGTTTCTCACAAGTTATCAAAACCCTGAAGGTCAAACATTGCTCCGGGTT 1558
|| |||||||||||| |||||||||| ||||||||||||||| ||| ||||||||||||
Sbjct 1532 TTGTATTTGCAGTTTGTCACAAGTTACCAAAACCCTGAAGGTAAAAGTTTGCTCCGGGTT 1591
Query 1559 ACTACTGTATGCAGACAGTGGATAGACAGTGCTGTGAGTTCAGAGG-AA--CTTGTGCAA 1615
|| |||||| |||||||||| | || | ||||||||| |||||| || |||||||||
Sbjct 1592 ACAACTGTAACCAGACAGTGGGTGGATACTGCTGTGAGCACAGAGGTAAAACTTGTGCAA 1651
Query 1616 GGCTTTGACCAAGAAACTGCTGCTGTGGTCATGGCTAGATTAGCTTCTTTGAAAATGGAG 1675
||||||||||||||||||||||||||||| ||||| |||||| |||| || ||||||||
Sbjct 1652 GGCTTTGACCAAGAAACTGCTGCTGTGGTTATGGCAAGATTAACTTCCTTAAAAATGGAA 1711
Query 1676 TCAGAGG 1682
||||||
Sbjct 1712 ACAGAGG 1718
Score = 817 bits (442), Expect = 0.0
Identities = 605/684 (88%), Gaps = 10/684 (1%)
Strand=Plus/Plus
Query 1760 GAGGGATTTGATGCTACTCGCTGGTTAGATCGGAATCTCATTCGTCTTTGTTCAAAATTT 1819
|||||||||||||||||||| ||| ||||||||| |||||||||||| ||||||||||||
Sbjct 1718 GAGGGATTTGATGCTACTCGGTGGCTAGATCGGACTCTCATTCGTCTGTGTTCAAAATTT 1777
Query 1820 GGAGACTATAGAAAGGATGATCCAGCCTCCTTCACGCTGAATCCCTATTTTTCGTTATTT 1879
|| || |||||||||||||||||| |||| || |||||||||||||||||||| || ||
Sbjct 1778 GGTGAATATAGAAAGGATGATCCAACCTCGTTTACGCTGAATCCCTATTTTTCATTGTTC 1837
Query 1880 CCTCAATTTATATTTAATC-TGCGGCGATCGCAGTTTGTTCAGGTATTTAACAATAGCCC 1938
|||||||| || ||||| | ||||||| || |||||||||||||| |||||||| || ||
Sbjct 1838 CCTCAATTCATGTTTAA-CTTGCGGCGGTCACAGTTTGTTCAGGTCTTTAACAACAGTCC 1896
Query 1939 TGATGAAACCGCATATTTCTGCATGTTACTAAACCGGGAGAATATTTCGAATGCAACTGT 1998
||||||||||||||| ||| ||||| | ||||||||||| |||||||| |||||||||||
Sbjct 1897 TGATGAAACCGCATACTTCCGCATGCTGCTAAACCGGGAAAATATTTCAAATGCAACTGT 1956
Query 1999 CATGATCCAACCGTCGT-TAACAACATATTCATTCAATTCACCAGCTGAACCAGCTTTGC 2057
|||||||||||| || | | || |||||||||||||| ||||| || | ||||||||||
Sbjct 1957 CATGATCCAACCATC-TCTGACGTCATATTCATTCAATGCACCACCTCAGCCAGCTTTGC 2015
Query 2058 TAGATGTGGCTTCCATTGCAGCCGATCGA-ATTCTTTTATTAGATGCATATTTTAGCGTT 2116
| |||||||||||||||||||| || | | |||||| ||||||||||||||||||| |||
Sbjct 2016 TGGATGTGGCTTCCATTGCAGCTGA-CAAGATTCTTCTATTAGATGCATATTTTAGTGTT 2074
Query 2117 GTTGTCTTCCATGGAATGACTATAGCACAATGGCGAAATATGGGTTATCATCATCAGCCT 2176
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 2075 GTTGTCTTCCATGGAATGACTATAGCGCAATGGCGAAACATGGGTTATCATCATCAGCCT 2134
Query 2177 GAACACCAGGCTTTTGCTGAGTTATTGCAAGCTCCTCAAGAGGATTCCCAGATGATAGTC 2236
||||| |||| |||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 2135 GAACATGAGGCCTTTGCTCAGTTATTGCAAGCTCCTCAAGAGGATTCCCAGATGTTAGTC 2194
Query 2237 CGGGAACGTTTCCCTGTCCCAAGATTAGTTGTCTGTGATCAGCATGGCTCGCAGGCAAGG 2296
||||| |||||||| ||||| ||||||||||| |||||||| ||||| || |||||||||
Sbjct 2195 CGGGAGCGTTTCCCAGTCCCGAGATTAGTTGTGTGTGATCAACATGGATCACAGGCAAGG 2254
Query 2297 TTTTTATTGGCGAAGCTGAATCCATCAGCGACGTACAACAATGCAAACGAGATGTCTA-C 2355
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 2255 TTTTTATTGGCTAAGCTGAATCCATCAGCGACTTACAACAATGCAAACGAGATGTC-AGC 2313
Query 2356 AGGGTCAGATGTGATATTCACAGACGACGTGAGCCTTCAAGTCTTCTTTGAGCATCTC-C 2414
|||||||| | || ||||| ||||| |||||||| |||||||| ||||||||||| |
Sbjct 2314 TGGGTCAGACATAATCTTCACTGACGATGTGAGCCTGCAAGTCTTTTTTGAGCATCTTTC 2373
Query 2415 AGAAGCTGGTTGTGCAGTCTTGAG 2438
||| |||| ||||| || ||||
Sbjct 2374 -GAAACTGGCCGTGCAATCCTGAG 2396
> Ahg314991 jgi|Araly1|314991|fgenesh1_pm.C_scaffold_2000024
Length=210
Score = 327 bits (177), Expect = 2e-88
Identities = 199/210 (95%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 2228 ATGATAGTCCGGGAACGTTTCCCTGTCCCAAGATTAGTTGTCTGTGATCAGCATGGCTCG 2287
||| ||||||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGCTAGTCCGTGAGCGTTTCCCTGTCCCAAGATTAGTTGTCTGTGATCAGCACGGCTCG 60
Query 2288 CAGGCAAGGTTTTTATTGGCGAAGCTGAATCCATCAGCGACGTACAACAATGCAAACGAG 2347
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAGGCAAGGTTTTTATTGGCAAAGCTGAATCCATCAGCGACGTACAACAATGCAAACGAA 120
Query 2348 ATGTCTACAGGGTCAGATGTGATATTCACAGACGACGTGAGCCTTCAAGTCTTCTTTGAG 2407
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 ATGTCGACAGGGTCAGATGTGATATTCACAGACGACGTTAGCCTTCAAGTCTTCTTTGAA 180
Query 2408 CATCTCCAGAAGCTGGTTGTGCAGTCTTGA 2437
||||| ||||||||||| ||||||||||||
Sbjct 181 CATCTTCAGAAGCTGGTAGTGCAGTCTTGA 210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99796441900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5