BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23685.1
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905435 jgi|Araly1|905435|Al_scaffold_0003_2563 1319 0.0
Ahg930411 jgi|Araly1|930411|scaffold_302868.1 939 0.0
Ahg905324 jgi|Araly1|905324|Al_scaffold_0003_2452 329 2e-89
Ahg340580 jgi|Araly1|340580|fgenesh1_pg.C_scaffold_3000343 287 1e-76
Ahg477685 jgi|Araly1|477685|fgenesh2_kg.3__386__AT3G04250.1 202 4e-51
Ahg314297 jgi|Araly1|314297|fgenesh1_pm.C_scaffold_1003077 198 6e-50
Ahg887737 jgi|Araly1|887737|Al_scaffold_0685_1 191 9e-48
Ahg930412 jgi|Araly1|930412|scaffold_302869.1 187 1e-46
Ahg925736 jgi|Araly1|925736|scaffold_201297.1 165 6e-40
Ahg479757 jgi|Araly1|479757|fgenesh2_kg.3__2458__AT3G22421.1 139 3e-32
Ahg923074 jgi|Araly1|923074|scaffold_104355.1 80.5 2e-14
Ahg937320 jgi|Araly1|937320|scaffold_501511.1 76.8 3e-13
> Ahg905435 jgi|Araly1|905435|Al_scaffold_0003_2563
Length=993
Score = 1319 bits (714), Expect = 0.0
Identities = 899/988 (91%), Gaps = 14/988 (1%)
Strand=Plus/Plus
Query 1 ATGCACATTGGTCAAGCCGCAGCAAAGGAAGGTGAGTCTCAGATGATCGTGATGATGGGT 60
||||| ||||||||||||||||||||||||||||||| |||||||||| || ||||||||
Sbjct 1 ATGCATATTGGTCAAGCCGCAGCAAAGGAAGGTGAGTTTCAGATGATCATGTTGATGGGT 60
Query 61 AACAATCTTTCTTTAACGAGTATTATTCTCAATGGAGATCCATCTATAGAGCATAAAGGA 120
||||||||| ||||||||| || |||| |||||||||||||||||||||||||||||
Sbjct 61 TACAATCTTTATTTAACGAGCATCGTTCTTAATGGAGATCCATCTATAGAGCATAAAGGC 120
Query 121 AAACTTCCTTGCCTTGACGAACAAGTCAAGATATCTCAGTTCTATCACTGCGAGGGCTTA 180
|||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| |||
Sbjct 121 AAACTTACTTGCCTTGACAAACAAGTCAAGATATCTCAGCTCTATCACTGCGAGGGTTTA 180
Query 181 CTGCTATGCATTTTAAAAGATGATTCTAGGTTTGTGGTT-TGTAATCCGTATTTGGAGCA 239
|||||||||| || ||||| |||||||||||||||||| | ||||| | ||||| |||
Sbjct 181 TTGCTATGCATATTGAAAGAAGATTCTAGGTTTGTGGTTCAG-AATCCATTTTTGGGGCA 239
Query 240 AACAAGGTGGATCGAACCAAGATATTCCCATCGTCCACACGGATGGGATAGG-TTCTCTT 298
||||||||||||||||||||||||||||||||||||| |||||||||||||| || | ||
Sbjct 240 AACAAGGTGGATCGAACCAAGATATTCCCATCGTCCAAACGGATGGGATAGGTTTAT-TT 298
Query 299 ACGCTCTTGGATACGTGAATACGGATTCTTGTTGTTA-CTACAAGTTGTTGGGGTTGATA 357
||||||| ||||||||||||| ||| |||||| | || ||||||||| ||| |||| |||
Sbjct 299 ACGCTCTCGGATACGTGAATAAGGAATCTTGTCG-TAGCTACAAGTTTTTGAGGTTTATA 357
Query 358 GATTATTACTACAATGCACACGAGAAGCAATTCTTTTGGTATGGAATCTACGATTTTGAC 417
|||||||||||||| |||| ||| ||||| ||||||||||||| ||||||||||||||||
Sbjct 358 GATTATTACTACAAGGCACCCGAAAAGCAGTTCTTTTGGTATGAAATCTACGATTTTGAC 417
Query 418 TCTGATTTATGGACTACTCTTGATGTCACTCCGCATTGGCGTATAGCGTTTTGTAACCGT 477
|||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||| |
Sbjct 418 TCTGATTTATGGACGACTCTTGATGTCACTCCACATTGGCGTATAGCATTTTGTAACCCT 477
Query 478 GGCGTTTCTCTTAAGGGAAGCACGTACTGGTGTGCTGCAGAAAGGAACGTAGATGTCGAT 537
||||| ||||||||||||| ||| |||| |||||||| ||||||||||||||||| |||
Sbjct 478 GGCGTGTCTCTTAAGGGAAACACTTACTTTTGTGCTGCTGAAAGGAACGTAGATGTAGAT 537
Query 538 GAAGTCTTGGCCGATCGCTTAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTT 597
|||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 538 GAAGTCTTGGCCAATAGCTTAATCTGTTTCGATTTTACAAGTGAGAGATTTGGTCCGCTT 597
Query 598 CTGCCTCTGCCGTTTAGTGGTGGGCAT-ATTGACTGTATGACGTTATCTTGTGTTAGAGA 656
||||||||||||||||||||||||||| | ||| | |||||| || ||||||||||||||
Sbjct 598 CTGCCTCTGCCGTTTAGTGGTGGGCATCA-TGATTATATGACTTTGTCTTGTGTTAGAGA 656
Query 657 AGAGAAGCTTGCGGTTTTACTTCAGCACGATGAATCAAATCCATATGAGCTTGACTTATG 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 657 AGAGAAGCTTGCGGTTTTACTTCAGCACGATGAATCAAATCCATATGAGCTTGACTTGTG 716
Query 717 GATTACGACCAAGATTGAGACTGGAGAGGAGAAGAAAGTCGCCTTTGGTTTTGATGGAC- 775
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 717 GATTACGACTAAGATTGAGACTGAAGAGGAGAAGAAAGTCGCCTTTGGTTTTGATG-ACC 775
Query 776 GTAACCGCGAGAGAGTTATTGTCATTGGAGAGGCTGGATACTTGAGGGGATTGGATCTCG 835
|||| ||| | ||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 776 GTAATCGCCACAGAGTTATTGTCATTGGGGAGGCTGGATACTTGAGGGCATTGGATCTCG 835
Query 836 TTGGAGATTTTGGAGACCAA-GAATGTAGGACTGATCTGT-GCTCTTATGTTCCAAGTTT 893
|||||||||||||||||||| || |||| | | ||||||| | |||||||||||||||||
Sbjct 836 TTGGAGATTTTGGAGACCAAAGA-TGTACGCCAGATCTGTCG-TCTTATGTTCCAAGTTT 893
Query 894 AGTACAAATCAAGCAACCTGAAGGAGGGGAATCGAAACAACAAAGCGATTTAGAAAAGTG 953
||| ||||||||||||||||||||| ||||| ||||||| |||||||||| |||||||
Sbjct 894 AGTGCAAATCAAGCAACCTGAAGGACGGGAAAGGAAACAAGAAAGCGATTTGGAAAAGTC 953
Query 954 TCGATATGATGAAAACATGTTGAGGCTT 981
|||||||||||||||||||| ||| |||
Sbjct 954 TCGATATGATGAAAACATGTCGAGACTT 981
> Ahg930411 jgi|Araly1|930411|scaffold_302868.1
Length=1141
Score = 939 bits (508), Expect = 0.0
Identities = 661/734 (90%), Gaps = 14/734 (2%)
Strand=Plus/Plus
Query 19 GCAGCAAAGGAAGGTGAGTCTCAGATGATCGTGATGATGGGTAACAATCTTTCTTTAACG 78
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 45 GCATCAAAGGAAGGTGAGTCTCAGATGATCGTGATGATGGGTAACAATCTTTATTTAACG 104
Query 79 AGTATTATTCTCAATGGAGATCCATCTATAGAGCATAA-AGGA-AAACTTCCTTGCCTTG 136
|| |||| |||||||||||| |||||||| ||||| || | || |||||| |||||||||
Sbjct 105 AGCATTACTCTCAATGGAGAACCATCTATTGAGCA-AATA-GACAAACTTACTTGCCTTG 162
Query 137 ACGAACAAGTCAAGATATCTCAGTTCTATCACTGCGAGGGCTTACTGCTATGCATTTTAA 196
||||||||| ||||||||| ||| ||| | |||||||||||||| |||||||||| || |
Sbjct 163 ACGAACAAGCCAAGATATCACAGGTCTTTGACTGCGAGGGCTTATTGCTATGCATATTGA 222
Query 197 AAGATGATTCTAGGTTTGTGGTT-TGTAATCCGTATTTGGAGCAAACAAGGTGGATCGAA 255
|||| |||||||||||||||||| || ||||||||||||| |||||||||||||||||||
Sbjct 223 AAGAAGATTCTAGGTTTGTGGTTCTG-AATCCGTATTTGGGGCAAACAAGGTGGATCGAA 281
Query 256 CCAAGATATTCCCATCGTCCACACGGATGGGATAGGTTCT-CTTACGCTCTTGGATACGT 314
||||||||||||||||||||| ||||||| || ||||| | ||| ||||| ||||||||
Sbjct 282 CCAAGATATTCCCATCGTCCATACGGATGTGACAGGTT-TAGTTATGCTCTCGGATACGT 340
Query 315 GAATACGGATTCTTGTTGTTA-CTACAAGTTGTTGGGGTTGATAGATTATTACTACAATG 373
||||| ||| |||||| | || ||||||||| ||| |||| |||||||||| ||||||||
Sbjct 341 GAATAAGGAATCTTGTCG-TAGCTACAAGTTATTGAGGTTTATAGATTATTTCTACAATG 399
Query 374 CACACGAGAAGCAATTCTTTTGGTATGGAATCTACGATTTTGACTCTGATTTATGGACTA 433
|| ||| ||||| ||||||||||||| |||||| ||||||||||||||||||||||| |
Sbjct 400 TACCCGAAAAGCAGTTCTTTTGGTATGAAATCTATGATTTTGACTCTGATTTATGGACGA 459
Query 434 CTCTTGATGTCA-CTCCGCATTGGCGTATAGCGTTTTGTAACCGTGGCGTTTCTCTTAAG 492
|||||||| | | |||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 460 CTCTTGATAT-ATCTCCACATTGGCGTATAGCATTTTGTAACCGTGGCGTTTCTCTTAAG 518
Query 493 GGAAGCACGTACTGGTGTGCTGCAGAAAGGAACGTAGATGTCGATGAAGTCTTGGCCGAT 552
|||| ||| |||| |||||||| ||||||||||||||||| | |||||||||||| ||
Sbjct 519 GGAAACACTTACTTTTGTGCTGCTGAAAGGAACGTAGATGTAAAAGAAGTCTTGGCCAAT 578
Query 553 CGCTTAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTCTGCCTCTGCCGTTT 612
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 AGCTTAATCTGTTTCGATTTTACAAGTGAGAGATTTGGTCCGCTTCTGCCTCTGCCGTTT 638
Query 613 AGTGGTGGGCAT-ATTGACTGTATGACGTTATCTTGTGTTAGAGAAGAGAAGCTTGCGGT 671
||||||||| || | ||||| || ||| || ||||||||||||||||||||||||||| |
Sbjct 639 AGTGGTGGGTATCA-TGACTATACGACATTGTCTTGTGTTAGAGAAGAGAAGCTTGCGCT 697
Query 672 TTTACTTCAGCACGATGAATCAAATCCATATGAGCTTGACTTATGGATTACGACCAAGAT 731
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 698 TTTACTTCAGCACGATGAATCAAATCCATATGAGCTTGACTTATGGATTACGACTAAGAT 757
Query 732 TGAGACTGGAGAGG 745
|||||||| |||||
Sbjct 758 TGAGACTGAAGAGG 771
Score = 272 bits (147), Expect = 3e-72
Identities = 219/253 (87%), Gaps = 7/253 (3%)
Strand=Plus/Plus
Query 742 GAGGAGAAGAAAGTCGCCTTTGGTTTTGATG--GACG-TAACCGCGAGAGAGTTATTGTC 798
|||||||||||||||||| |||||||||||| | | ||| ||| | | | ||| ||
Sbjct 855 GAGGAGAAGAAAGTCGCCATTGGTTTTGATGATGGGGATAATCGCCACACAATTAACATC 914
Query 799 ATTGGAGAGGCTGGATACTTGAGGGGATTGGATCTCGTTGGAGATTTTGGAGACCAAGAA 858
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 915 ATTGGAGAGGCTGGATACTTCAGGGCATTGGATCTCGTTGGAGATTTTGGAGACCAAGAA 974
Query 859 TGT-AGGACTGATCTGTGCTCTTATGTTCCAAGTTTAGTACAAATCAAGCAACCTGAAGG 917
||| || || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 975 TGTCAG-ACAGATCTGTGCTCTTATGTTCCAAGTTTAGTGGAAATCAAGCAACCTGAAGG 1033
Query 918 AGGGGAATCGAAACAACAAAGCGATTTAGAAAAG-TGTCGATATGATGAAAACATGTTGA 976
||| ||| | ||||| ||||||| || || ||| | |||||||||||||||||||| ||
Sbjct 1034 AGGAGAAAGGGAACAAGAAAGCGAATTGGAGAAGCT-TCGATATGATGAAAACATGTCGA 1092
Query 977 GGCTTGTCTCACT 989
| ||||||| |||
Sbjct 1093 GACTTGTCTTACT 1105
> Ahg905324 jgi|Araly1|905324|Al_scaffold_0003_2452
Length=1212
Score = 329 bits (178), Expect = 2e-89
Identities = 528/690 (77%), Gaps = 52/690 (8%)
Strand=Plus/Plus
Query 34 GAGTCTCAGATGATCGTGATGATGGGTAACAATCTTTCTTTAACGAGTATTATTC-TCAA 92
|||||||||||||||||| |||||| | ||||||||| ||||| ||| | ||| | | ||
Sbjct 151 GAGTCTCAGATGATCGTGTTGATGGATTACAATCTTTGTTTAATGAGCA-TATCCATGAA 209
Query 93 T---GGAGATCCATCTATAGAGCA-TAAAGGAAAACTTCCTTGCCTTGACGAACAAGTCA 148
| ||||| ||||||| |||| | || ||| |||||| |||||||||||||||||||||
Sbjct 210 TGGAGGAGAACCATCTACAGAG-ATTAGAGGTAAACTTACTTGCCTTGACGAACAAGTCA 268
Query 149 AGATATCTCAGTTCTATCACTGCGAGGGCTTACTGCTATGCATTTTAAAAGATGATTCTA 208
|||||||||| |||| ||| |||||||| ||| || ||||||| || ||||| ||| |||
Sbjct 269 AGATATCTCAATTCTTTCATTGCGAGGGTTTATTGTTATGCATCTTGAAAGACGATACTA 328
Query 209 -GGTTTGTGGTTTGTAATCCGTATTTGGAGCAAACAAGG-TGGATCGAACCAAGATATTC 266
|||| |||||||| ||||| |||| || |||||||||| || ||| |||| |||| |||
Sbjct 329 AGGTT-GTGGTTTGGAATCCATATTGGGGGCAAACAAGGATG-ATCCAACCCAGATTTTC 386
Query 267 CCATC-GTCCACACGGATGGGA-TAGGTTCTCTTACGCTCTTGGATAC---GTGAATACG 321
|| | | ||| |||| ||| | || || ||| ||||| |||||| | |||||
Sbjct 387 ACA-CAGGCCAGGCGGAACGGACT-GGATCAATTATGCTCTCGGATACTACGAGAATAAT 444
Query 322 GATTCTTGTTGTTA-C-TACAAGTTGTTGGGGTTGATAGATTATTACTAC-A-ATGC-A- 375
| | | || | | | || || ||| |||| ||||||||| ||| | || | |
Sbjct 445 -AGTAA-GATGAAATCCTGTAAATTCTTGAGGTTTTTAGATTATTTTTACTATATCCCAG 502
Query 376 CACG-AG-AA-GCAA---TTCTTTT--GGTATGGAATCTACGATTTTGACTCTGATTTAT 427
| | | || | || || |||| |||||| |||||||||||||||| ||| |||||
Sbjct 503 CCCCCACCAAAGAAAAGATTTTTTTTTGGTATGAAATCTACGATTTTGACACTGGTTTAT 562
Query 428 GGACTACTCTTGATGTCACTCCGCATTGGCGTATA-GCGTTTTG-TAACCGTGGCGTTTC 485
|||| |||||||||||||| || || ||||||||| | |||| | |||| |||||||||
Sbjct 563 GGACAACTCTTGATGTCACCCCACACTGGCGTATAAG-GTTT-GATAACTATGGCGTTTC 620
Query 486 TCTTAAGGGAAGCACGTACTGGTGTGCTGCAGAAAGGAACG-TAG-ATGTCGATGAAGTC 543
||| ||||||| ||| || ||||||||| ||||||||||| | | | | | | ||
Sbjct 621 TCTCAAGGGAAACACTTATTGGTGTGCTACAGAAAGGAACCCT-GCA-GACCCTTTTCTC 678
Query 544 T-TGGCCGATCGCTTAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTCTGCC 602
|| |||| | | ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 679 AATGTT-GATCACATCATCTGTTTTGACTTTACAAGTGAGAGGTTTGGTCCGCTTCTGCC 737
Query 603 TCTGCCGTTTAGTGGTGGGCATATTG-A-C-TGTATGACGTTATCTTGTGTTAGAGAAGA 659
| |||||||||| | | |||| | | | | |||| ||||||||||||| |||||
Sbjct 738 TTTGCCGTTTAGAACTACG--TATTACAACCT-TGTGACCCTATCTTGTGTTAGGGAAGA 794
Query 660 GAAGCTTGCGGTTTTACTTCAGC-ACGATG 688
||||||||| | |||| || || ||||||
Sbjct 795 GAAGCTTGCTGCTTTATTTT-GCCACGATG 823
> Ahg340580 jgi|Araly1|340580|fgenesh1_pg.C_scaffold_3000343
Length=870
Score = 287 bits (155), Expect = 1e-76
Identities = 298/364 (82%), Gaps = 22/364 (6%)
Strand=Plus/Plus
Query 386 AATTCTTTTGGTATGGAATCTACGATTTTGACTCTGATTTATGGACTACTCTTGATGTCA 445
|||| || || |||| |||||||||||||||||||| ||| ||||| |||||||||||||
Sbjct 294 AATT-TTATGTTATGAAATCTACGATTTTGACTCTGTTTTGTGGACGACTCTTGATGTCA 352
Query 446 CTCCGCATTGGC-G-TA-TAGCGTTTTGTAACCGTGGCG-TTTCTCTTAAGGGAAGCACG 501
|||| ||||||| | || || ||||| |||||||| ||| |||| ||| |||||| |||
Sbjct 353 CTCCACATTGGCGGATAGTACCGTTTGGTAACCGTAGCGTTTTC-CTTGAGGGAAACACT 411
Query 502 TACTGGTGTGCTGCAGAAAGGAACGT-AGATGTCGA-TGA-AGTCTTGG-C-C---GATC 553
|||| |||||| ||||||||||| | ||| || || || | | ||| | | ||||
Sbjct 412 TACTATTGTGCTTCAGAAAGGAAC-TCAGAAGTGGACGGACA-CCATGGACACAAAGATC 469
Query 554 GCTTAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTCTGCCTCTGCCGTTTA 613
| ||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||
Sbjct 470 ACATAATCTGTTTTGATTATACAAAAGAGAGATTTGGACCGCTTCTACCTCTGCCGTTTA 529
Query 614 GTGGTGGGCAT-ATTGACTGTATGACGTTATCTTGTGTTAGAGAAGAGAAGCTTGCGGTT 672
| | ||| || | ||||| | |||| ||||||||||||||||||||||||||||||| |
Sbjct 530 GCGCCGGGTATGA-TGACTATGTGACTTTATCTTGTGTTAGAGAAGAGAAGCTTGCGGCT 588
Query 673 TTACTT-CAGCACGATGAA-TCAAATCCATATGAGCTTGACTTATGGATTACGACCAAGA 730
|||||| | ||| | ||| | ||||| ||||||| ||||| ||||||| ||||| ||||
Sbjct 589 TTACTTAC-GCATAACGAAGT-AAATCTATATGAGTTTGACATATGGATCACGACTAAGA 646
Query 731 TTGA 734
||||
Sbjct 647 TTGA 650
> Ahg477685 jgi|Araly1|477685|fgenesh2_kg.3__386__AT3G04250.1
Length=852
Score = 202 bits (109), Expect = 4e-51
Identities = 163/189 (86%), Gaps = 4/189 (2%)
Strand=Plus/Plus
Query 549 CGATCGCTTAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTCTGCCTCTGCC 608
||||| | |||||||||||||||| |||||||||||| |||| |||||||||| ||| ||
Sbjct 228 CGATCACATAATCTGTTTTGATTTCACAAGTGAGAGAGTTGGGCCGCTTCTGCGTCTACC 287
Query 609 GTTTAGTGGTGGGCAT-ATTGACTGTATGACGTTATCTTGTGTTAGAGAAGAGAAGCTTG 667
|||| | | ||||| | | ||||| | |||| ||||||||||||||||||||||||||||
Sbjct 288 GTTTTGCGCTGGGCTTCA-TGACTATGTGACTTTATCTTGTGTTAGAGAAGAGAAGCTTG 346
Query 668 CGGTTTTACTTCAGC-ACGATGAATCAAATCCATATGAGCTTGACTTATGGATTACGACC 726
||| ||||||| | | || | |||||||||||||||||| |||| |||||||||||||
Sbjct 347 CGGCTTTACTT-ACCCACAACGAATCAAATCCATATGAGTTTGAGATATGGATTACGACT 405
Query 727 AAGATTGAG 735
|||||||||
Sbjct 406 AAGATTGAG 414
> Ahg314297 jgi|Araly1|314297|fgenesh1_pm.C_scaffold_1003077
Length=1167
Score = 198 bits (107), Expect = 6e-50
Identities = 283/363 (78%), Gaps = 32/363 (9%)
Strand=Plus/Plus
Query 385 CAATTCTTTTGGTATGGAATCTACGATTTTGACTCTGATTTATGGACTACTCTTGATGTC 444
||||| |||||||||| |||||| |||||| |||||||||||||||| ||||||||||||
Sbjct 535 CAATTTTTTTGGTATGAAATCTATGATTTTAACTCTGATTTATGGACAACTCTTGATGTC 594
Query 445 ACTCCGCATTGGCGTATAGCGT-TTTGT-AACCGTGGCGTTTCTCTTAAGGGAAGCACGT 502
||||| | ||| |||||| | ||| | || |||| ||||| || | ||||| ||| |
Sbjct 595 ACTCCATACTGGTTTATAGC-TATTTCTCAA-AGTGGTGTTTCCCTCATGGGAAACACAT 652
Query 503 ACTGGTGTGCTGCAGAAAGGAACGTAGATGTCGATGAAGTCT-TGGCCGATCGC-TTAAT 560
||||||||||| || | || | || | || | || | | | ||||| | || ||
Sbjct 653 ACTGGTGTGCT--AG-GA-TAA-G--GA-G-CG--GCGGT-TATAG-CGATCACATT-AT 698
Query 561 CTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTCTGCCTCTGCCGTTTAGTGGT-G 619
||||||||||||||||| ||||||||||| |||||| ||||| |||| ||||| | | |
Sbjct 699 TTGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTTTGCCTTTGCCATTTAGCGTTAG 758
Query 620 GGCAT-ATTGACTGTATGACGTTATCTTGTGTTAGAGAAGAGAAGCTTGCGGTTTTACTT 678
|| || ||| | ||| ||| ||||||||||||||||||||||||||||| |||||| ||
Sbjct 759 GG-ATCATTCA-TGTGTGATTTTATCTTGTGTTAGAGAAGAGAAGCTTGCAGTTTTATTT 816
Query 679 CAGCACGA--TGAATCA-AATCCATATGA-GCTTGACTTATGGATTACGACCAAGATTGA 734
|| ||| | || || | || |||||| | |||| ||||||||||| ||| ||||
Sbjct 817 CAACACCAAATGTATTATAA---ATATGAAG-TTGAAATATGGATTACGGTTAAGCTTGA 872
Query 735 GAC 737
|||
Sbjct 873 GAC 875
> Ahg887737 jgi|Araly1|887737|Al_scaffold_0685_1
Length=858
Score = 191 bits (103), Expect = 9e-48
Identities = 161/189 (85%), Gaps = 4/189 (2%)
Strand=Plus/Plus
Query 549 CGATCGCTTAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTCTGCCTCTGCC 608
||||| | |||||||||||||||| |||||||||||| |||| |||||||||| ||| ||
Sbjct 234 CGATCACATAATCTGTTTTGATTTCACAAGTGAGAGAGTTGGGCCGCTTCTGCGTCTACC 293
Query 609 GTTTAGTGGTGGGCAT-ATTGACTGTATGACGTTATCTTGTGTTAGAGAAGAGAAGCTTG 667
|||| | | ||||| | | ||||| | |||| ||||||||||||||||||||||||||||
Sbjct 294 GTTTTGCGCTGGGCTTCA-TGACTATGTGACTTTATCTTGTGTTAGAGAAGAGAAGCTTG 352
Query 668 CGGTTTTACTTCAGC-ACGATGAATCAAATCCATATGAGCTTGACTTATGGATTACGACC 726
||| ||||||| | | || | ||||| ||||||||||| |||| |||||||||||||
Sbjct 353 CGGCTTTACTT-ACCCACAACGAATCCCATCCATATGAGTTTGAGATATGGATTACGACT 411
Query 727 AAGATTGAG 735
|||||||||
Sbjct 412 AAGATTGAG 420
> Ahg930412 jgi|Araly1|930412|scaffold_302869.1
Length=665
Score = 187 bits (101), Expect = 1e-46
Identities = 179/216 (83%), Gaps = 7/216 (3%)
Strand=Plus/Plus
Query 510 TGCTGCAGAAAGGAACGTAGATGTCGATGAAGTCTTGGCCGATCGCTTAATCTGTTTTGA 569
|||||| |||| ||||| | || | || |||||||| || | || |||||||||| ||
Sbjct 135 TGCTGCTGAAAAGAACGCAAATTTAGAAGAAGTCTTCACCTCTAGCATAATCTGTTTCGA 194
Query 570 TTTTACAAGTGAGAGATTTGGTCCGCTTCTGCCTCTGCCGTTTAGTG--G-TGGGCAT-A 625
|||||||||||||||||||||||||||||||| |||| |||||||| | ||||||| |
Sbjct 195 TTTTACAAGTGAGAGATTTGGTCCGCTTCTGCATCTGTCGTTTAGTACTGATGGGCATCA 254
Query 626 TTGACTGTATGACGTTATCTTGTGTTAGAGAAGAGAAGCTTGCGGTTTTACTTCAGC-AC 684
| |||| ||| || || |||||||||||||||||||| ||||||||||||||||| | ||
Sbjct 255 T-GACTATATTACCTTGTCTTGTGTTAGAGAAGAGAAACTTGCGGTTTTACTTCA-CTAC 312
Query 685 GATGAATCAAATCCATATGAGCTTGACTTATGGATT 720
| ||||||||||||| ||||| ||| ||||||
Sbjct 313 AACAAATCAAATCCATACAAGCTTTTCTTTTGGATT 348
> Ahg925736 jgi|Araly1|925736|scaffold_201297.1
Length=1231
Score = 165 bits (89), Expect = 6e-40
Identities = 445/607 (73%), Gaps = 63/607 (10%)
Strand=Plus/Plus
Query 38 CTCAGATGATCGTGATGATGGGTAACAATCTTTCTTTAACGAGTATTATTCTCAATGGAG 97
||| ||||||| ||||||||| | ||||| ||| ||||| | | ||| | ||||||| |
Sbjct 205 CTCGGATGATCATGATGATGGATTACAATGTTTATTTAATGGGCATTGTCCTCAATGAAA 264
Query 98 ATCCATCTATAGAG-CATAAAGGA-AAACTTCCTTGCCT---TGA--C-GAACAAGTCAA 149
||||||| | |||| | | | || |||||| | ||||| || | |||||||||||
Sbjct 265 ATCCATCCACAGAGTC-TCTA-GATAAACTTACGTGCCTACAAGATTCAGAACAAGTCAA 322
Query 150 GATATCTC-AGTTCTATCACTGCGAGGGCTTACTGCTATGCAT-TTTAAA-A-GATGATT 205
|| | || || ||| ||| || ||||| ||| || ||||||| || ||| | ||||||
Sbjct 323 AATTTATCAAG-TCTTTCATTGTGAGGGTTTATTGTTATGCATCTTGAAAGATGATGATA 381
Query 206 CT-AGGTTTGTGGTTTGTAATCCGTATTTGGAGCAAACAAGGTGGAT-CGAACCA-AGA- 261
|| ||| |||| ||||| ||||||||||||| |||||| || ||||| | ||||| | |
Sbjct 382 CTAAGG-TTGTTGTTTGGAATCCGTATTTGGGGCAAACGAGATGGATCCAAACCAGAAAG 440
Query 262 TATTCCCATCGTCCA---CACGGATGGGA-TAG-GTTCT-C--TTACGCTCTTGGATACG 313
|||| ||| || | | | ||| ||| || || | | |||||||| ||||||
Sbjct 441 TATTACCA-CG-CTAGTGGAGGGAAAGGACGAGATTTTTACAAGTACGCTCTAGGATACA 498
Query 314 TGAAT-A-CG-----G--ATTCTTGTTGTTA---CTACAAGTTGTTGGGGTTGATAGATT 361
||| | || | | |||||| | || ||| || | ||| |||| ||||||
Sbjct 499 AAAATAATCGCAAAAGAAAATCTTGTCG-TAGCCCTA-AA-ATCTTGAGGTTTATAGATG 555
Query 362 ATTACTACAATGCACACG-AGAAGCAATTCTTT-TGGTATGGAATCTACGATTTTGACTC 419
||| | || | || || |||| | | |||| |||||| ||||||||||||||| ||
Sbjct 556 ATTTCAACCGT-TACCCGAAGAA-CCCTGCTTTACGGTATGAAATCTACGATTTTGATTC 613
Query 420 TGATTTATGGACTACTCTTGATGTCACTCCGCATTGGCGTATAGCGTTTTGTAACCGTGG 479
||||||||||||||||||||||||| ||| || ||||||||| || | ||| |||
Sbjct 614 TGATTTATGGACTACTCTTGATGTCTTTCCACACTGGCGTATA---TTGTCCCACCATGG 670
Query 480 CGTTTCTCTTAAGGGAAGCACGTACTGGTGTGCTGCAGAAAGGAACGTAGATGTCGATGA 539
| ||||||| ||||||| ||| |||||| | | || |||| |||||| | | | | |
Sbjct 671 CATTTCTCTCAAGGGAAACACTTACTGGGGCGTTGTAGAACGGAACGCA-AAGGC-A--C 726
Query 540 AGTC-TTGGCCGATCGCTTAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTC 598
| | || | || |||||||||||||||||||||||||||||||||| ||| |||
Sbjct 727 A--CATTAAAC-AT---ATAATCTGTTTTGATTTTACAAGTGAGAGATTTGGACCGTTTC 780
Query 599 TGCCTCT 605
|||||||
Sbjct 781 TGCCTCT 787
> Ahg479757 jgi|Araly1|479757|fgenesh2_kg.3__2458__AT3G22421.1
Length=1236
Score = 139 bits (75), Expect = 3e-32
Identities = 234/304 (77%), Gaps = 37/304 (12%)
Strand=Plus/Plus
Query 395 GGTATGGAATCTACGATTTTGACTCTGATTTATGGACTACTCTTGATGTCACTCCGCATT 454
|||||| ||||||||||||||||| | |||||||||| |||||||| || ||||| || |
Sbjct 533 GGTATGAAATCTACGATTTTGACTTTAATTTATGGACGACTCTTGACGTTACTCCACACT 592
Query 455 GGCG--T--A-TA--G-C---GTTTT-GTAACCGTGGCGTTTCTCTTAAGGG-AAGCACG 501
|| | | | || | | ||||| ||||| ||| ||| |||| ||||| || |||
Sbjct 593 GGTGTTTAAATTATTGCCGTGGTTTTCGTAACTATGGTGTTACTCTCAAGGGTAA-CACT 651
Query 502 TACTGGTGTGCT-GCAGAAAGGAACGT-AGATGTCGATGAAGTCTTGGCCGATCGCTTAA 559
|||||||||||| || ||||||| | | | | | || || || |||| | |||
Sbjct 652 TACTGGTGTGCTATAAG-AAGGAAC-TCAAACG-CTTTG-CGTGTT----GATCACATAA 703
Query 560 TCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTCTGCCTCTGCCGTTTAGT-G-G 617
|||||||||||||||||||||||||||| ||||||||| || | ||||||||| | | |
Sbjct 704 TCTGTTTTGATTTTACAAGTGAGAGATTCGGTCCGCTTATGTATTTGCCGTTTATTAGAG 763
Query 618 -T-GG-G--CATATTGACTGTATGACGT-TATCTTGTGTTAGAGAAGAGAAGCTTGCGGT 671
| || | || | | || | |||| | |||||||||||||||||||||||||||||||
Sbjct 764 ATAGGTGTGCA-A--GCCT-TGTGAC-TCTATCTTGTGTTAGAGAAGAGAAGCTTGCGGT 818
Query 672 TTTA 675
||||
Sbjct 819 TTTA 822
Score = 122 bits (66), Expect = 3e-27
Identities = 101/118 (86%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 872 TGTGCTCTTATGTTCCAAGTTTAGTACAAATCAAGCAACCTGAAGGAGGGGAATCGAAAC 931
||||||||||||||||||||||||||||||||||| |||||| |||||| || |||||
Sbjct 1094 TGTGCTCTTATGTTCCAAGTTTAGTACAAATCAAGAAACCTGCAGGAGGCCAAAGGAAAC 1153
Query 932 AACAAAGC-GATTTAGAAAAGTGTCGATATGATGAAAACATGTTGAGGCTTGTCTCAC 988
|||||||| | ||||||||| |||||| |||| ||||||| | ||| ||| || |||
Sbjct 1154 AACAAAGCAG-TTTAGAAAAACGTCGATGTGATCAAAACATATCGAGACTTATCGCAC 1210
> Ahg923074 jgi|Araly1|923074|scaffold_104355.1
Length=1079
Score = 80.5 bits (43), Expect = 2e-14
Identities = 53/58 (91%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 555 CTTAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTCTGCCTCTGCCGTTT 612
||| ||||||||||||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct 633 CTTGATCTGTTTTGATTTTACAAGTGAGAGATTTGAACCGCGTCTTCCTCTGCCGTTT 690
> Ahg937320 jgi|Araly1|937320|scaffold_501511.1
Length=1211
Score = 76.8 bits (41), Expect = 3e-13
Identities = 49/53 (92%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 556 TTAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTCTGCCTCTGCC 608
||| ||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 655 TTACTCTGTTTTGATTTTACAAGTGAGAGATTTGGACCGCCCCTGCCTCTGCC 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36902983656
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5