BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G23685.1 Length=993 Score E Sequences producing significant alignments: (Bits) Value Ahg905435 jgi|Araly1|905435|Al_scaffold_0003_2563 1319 0.0 Ahg930411 jgi|Araly1|930411|scaffold_302868.1 939 0.0 Ahg905324 jgi|Araly1|905324|Al_scaffold_0003_2452 329 2e-89 Ahg340580 jgi|Araly1|340580|fgenesh1_pg.C_scaffold_3000343 287 1e-76 Ahg477685 jgi|Araly1|477685|fgenesh2_kg.3__386__AT3G04250.1 202 4e-51 Ahg314297 jgi|Araly1|314297|fgenesh1_pm.C_scaffold_1003077 198 6e-50 Ahg887737 jgi|Araly1|887737|Al_scaffold_0685_1 191 9e-48 Ahg930412 jgi|Araly1|930412|scaffold_302869.1 187 1e-46 Ahg925736 jgi|Araly1|925736|scaffold_201297.1 165 6e-40 Ahg479757 jgi|Araly1|479757|fgenesh2_kg.3__2458__AT3G22421.1 139 3e-32 Ahg923074 jgi|Araly1|923074|scaffold_104355.1 80.5 2e-14 Ahg937320 jgi|Araly1|937320|scaffold_501511.1 76.8 3e-13 > Ahg905435 jgi|Araly1|905435|Al_scaffold_0003_2563 Length=993 Score = 1319 bits (714), Expect = 0.0 Identities = 899/988 (91%), Gaps = 14/988 (1%) Strand=Plus/Plus Query 1 ATGCACATTGGTCAAGCCGCAGCAAAGGAAGGTGAGTCTCAGATGATCGTGATGATGGGT 60 ||||| ||||||||||||||||||||||||||||||| |||||||||| || |||||||| Sbjct 1 ATGCATATTGGTCAAGCCGCAGCAAAGGAAGGTGAGTTTCAGATGATCATGTTGATGGGT 60 Query 61 AACAATCTTTCTTTAACGAGTATTATTCTCAATGGAGATCCATCTATAGAGCATAAAGGA 120 ||||||||| ||||||||| || |||| ||||||||||||||||||||||||||||| Sbjct 61 TACAATCTTTATTTAACGAGCATCGTTCTTAATGGAGATCCATCTATAGAGCATAAAGGC 120 Query 121 AAACTTCCTTGCCTTGACGAACAAGTCAAGATATCTCAGTTCTATCACTGCGAGGGCTTA 180 |||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| ||| Sbjct 121 AAACTTACTTGCCTTGACAAACAAGTCAAGATATCTCAGCTCTATCACTGCGAGGGTTTA 180 Query 181 CTGCTATGCATTTTAAAAGATGATTCTAGGTTTGTGGTT-TGTAATCCGTATTTGGAGCA 239 |||||||||| || ||||| |||||||||||||||||| | ||||| | ||||| ||| Sbjct 181 TTGCTATGCATATTGAAAGAAGATTCTAGGTTTGTGGTTCAG-AATCCATTTTTGGGGCA 239 Query 240 AACAAGGTGGATCGAACCAAGATATTCCCATCGTCCACACGGATGGGATAGG-TTCTCTT 298 ||||||||||||||||||||||||||||||||||||| |||||||||||||| || | || Sbjct 240 AACAAGGTGGATCGAACCAAGATATTCCCATCGTCCAAACGGATGGGATAGGTTTAT-TT 298 Query 299 ACGCTCTTGGATACGTGAATACGGATTCTTGTTGTTA-CTACAAGTTGTTGGGGTTGATA 357 ||||||| ||||||||||||| ||| |||||| | || ||||||||| ||| |||| ||| Sbjct 299 ACGCTCTCGGATACGTGAATAAGGAATCTTGTCG-TAGCTACAAGTTTTTGAGGTTTATA 357 Query 358 GATTATTACTACAATGCACACGAGAAGCAATTCTTTTGGTATGGAATCTACGATTTTGAC 417 |||||||||||||| |||| ||| ||||| ||||||||||||| |||||||||||||||| Sbjct 358 GATTATTACTACAAGGCACCCGAAAAGCAGTTCTTTTGGTATGAAATCTACGATTTTGAC 417 Query 418 TCTGATTTATGGACTACTCTTGATGTCACTCCGCATTGGCGTATAGCGTTTTGTAACCGT 477 |||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||| | Sbjct 418 TCTGATTTATGGACGACTCTTGATGTCACTCCACATTGGCGTATAGCATTTTGTAACCCT 477 Query 478 GGCGTTTCTCTTAAGGGAAGCACGTACTGGTGTGCTGCAGAAAGGAACGTAGATGTCGAT 537 ||||| ||||||||||||| ||| |||| |||||||| ||||||||||||||||| ||| Sbjct 478 GGCGTGTCTCTTAAGGGAAACACTTACTTTTGTGCTGCTGAAAGGAACGTAGATGTAGAT 537 Query 538 GAAGTCTTGGCCGATCGCTTAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTT 597 |||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 538 GAAGTCTTGGCCAATAGCTTAATCTGTTTCGATTTTACAAGTGAGAGATTTGGTCCGCTT 597 Query 598 CTGCCTCTGCCGTTTAGTGGTGGGCAT-ATTGACTGTATGACGTTATCTTGTGTTAGAGA 656 ||||||||||||||||||||||||||| | ||| | |||||| || |||||||||||||| Sbjct 598 CTGCCTCTGCCGTTTAGTGGTGGGCATCA-TGATTATATGACTTTGTCTTGTGTTAGAGA 656 Query 657 AGAGAAGCTTGCGGTTTTACTTCAGCACGATGAATCAAATCCATATGAGCTTGACTTATG 716 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 657 AGAGAAGCTTGCGGTTTTACTTCAGCACGATGAATCAAATCCATATGAGCTTGACTTGTG 716 Query 717 GATTACGACCAAGATTGAGACTGGAGAGGAGAAGAAAGTCGCCTTTGGTTTTGATGGAC- 775 ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 717 GATTACGACTAAGATTGAGACTGAAGAGGAGAAGAAAGTCGCCTTTGGTTTTGATG-ACC 775 Query 776 GTAACCGCGAGAGAGTTATTGTCATTGGAGAGGCTGGATACTTGAGGGGATTGGATCTCG 835 |||| ||| | ||||||||||||||||| ||||||||||||||||||| ||||||||||| Sbjct 776 GTAATCGCCACAGAGTTATTGTCATTGGGGAGGCTGGATACTTGAGGGCATTGGATCTCG 835 Query 836 TTGGAGATTTTGGAGACCAA-GAATGTAGGACTGATCTGT-GCTCTTATGTTCCAAGTTT 893 |||||||||||||||||||| || |||| | | ||||||| | ||||||||||||||||| Sbjct 836 TTGGAGATTTTGGAGACCAAAGA-TGTACGCCAGATCTGTCG-TCTTATGTTCCAAGTTT 893 Query 894 AGTACAAATCAAGCAACCTGAAGGAGGGGAATCGAAACAACAAAGCGATTTAGAAAAGTG 953 ||| ||||||||||||||||||||| ||||| ||||||| |||||||||| ||||||| Sbjct 894 AGTGCAAATCAAGCAACCTGAAGGACGGGAAAGGAAACAAGAAAGCGATTTGGAAAAGTC 953 Query 954 TCGATATGATGAAAACATGTTGAGGCTT 981 |||||||||||||||||||| ||| ||| Sbjct 954 TCGATATGATGAAAACATGTCGAGACTT 981 > Ahg930411 jgi|Araly1|930411|scaffold_302868.1 Length=1141 Score = 939 bits (508), Expect = 0.0 Identities = 661/734 (90%), Gaps = 14/734 (2%) Strand=Plus/Plus Query 19 GCAGCAAAGGAAGGTGAGTCTCAGATGATCGTGATGATGGGTAACAATCTTTCTTTAACG 78 ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 45 GCATCAAAGGAAGGTGAGTCTCAGATGATCGTGATGATGGGTAACAATCTTTATTTAACG 104 Query 79 AGTATTATTCTCAATGGAGATCCATCTATAGAGCATAA-AGGA-AAACTTCCTTGCCTTG 136 || |||| |||||||||||| |||||||| ||||| || | || |||||| ||||||||| Sbjct 105 AGCATTACTCTCAATGGAGAACCATCTATTGAGCA-AATA-GACAAACTTACTTGCCTTG 162 Query 137 ACGAACAAGTCAAGATATCTCAGTTCTATCACTGCGAGGGCTTACTGCTATGCATTTTAA 196 ||||||||| ||||||||| ||| ||| | |||||||||||||| |||||||||| || | Sbjct 163 ACGAACAAGCCAAGATATCACAGGTCTTTGACTGCGAGGGCTTATTGCTATGCATATTGA 222 Query 197 AAGATGATTCTAGGTTTGTGGTT-TGTAATCCGTATTTGGAGCAAACAAGGTGGATCGAA 255 |||| |||||||||||||||||| || ||||||||||||| ||||||||||||||||||| Sbjct 223 AAGAAGATTCTAGGTTTGTGGTTCTG-AATCCGTATTTGGGGCAAACAAGGTGGATCGAA 281 Query 256 CCAAGATATTCCCATCGTCCACACGGATGGGATAGGTTCT-CTTACGCTCTTGGATACGT 314 ||||||||||||||||||||| ||||||| || ||||| | ||| ||||| |||||||| Sbjct 282 CCAAGATATTCCCATCGTCCATACGGATGTGACAGGTT-TAGTTATGCTCTCGGATACGT 340 Query 315 GAATACGGATTCTTGTTGTTA-CTACAAGTTGTTGGGGTTGATAGATTATTACTACAATG 373 ||||| ||| |||||| | || ||||||||| ||| |||| |||||||||| |||||||| Sbjct 341 GAATAAGGAATCTTGTCG-TAGCTACAAGTTATTGAGGTTTATAGATTATTTCTACAATG 399 Query 374 CACACGAGAAGCAATTCTTTTGGTATGGAATCTACGATTTTGACTCTGATTTATGGACTA 433 || ||| ||||| ||||||||||||| |||||| ||||||||||||||||||||||| | Sbjct 400 TACCCGAAAAGCAGTTCTTTTGGTATGAAATCTATGATTTTGACTCTGATTTATGGACGA 459 Query 434 CTCTTGATGTCA-CTCCGCATTGGCGTATAGCGTTTTGTAACCGTGGCGTTTCTCTTAAG 492 |||||||| | | |||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 460 CTCTTGATAT-ATCTCCACATTGGCGTATAGCATTTTGTAACCGTGGCGTTTCTCTTAAG 518 Query 493 GGAAGCACGTACTGGTGTGCTGCAGAAAGGAACGTAGATGTCGATGAAGTCTTGGCCGAT 552 |||| ||| |||| |||||||| ||||||||||||||||| | |||||||||||| || Sbjct 519 GGAAACACTTACTTTTGTGCTGCTGAAAGGAACGTAGATGTAAAAGAAGTCTTGGCCAAT 578 Query 553 CGCTTAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTCTGCCTCTGCCGTTT 612 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 579 AGCTTAATCTGTTTCGATTTTACAAGTGAGAGATTTGGTCCGCTTCTGCCTCTGCCGTTT 638 Query 613 AGTGGTGGGCAT-ATTGACTGTATGACGTTATCTTGTGTTAGAGAAGAGAAGCTTGCGGT 671 ||||||||| || | ||||| || ||| || ||||||||||||||||||||||||||| | Sbjct 639 AGTGGTGGGTATCA-TGACTATACGACATTGTCTTGTGTTAGAGAAGAGAAGCTTGCGCT 697 Query 672 TTTACTTCAGCACGATGAATCAAATCCATATGAGCTTGACTTATGGATTACGACCAAGAT 731 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 698 TTTACTTCAGCACGATGAATCAAATCCATATGAGCTTGACTTATGGATTACGACTAAGAT 757 Query 732 TGAGACTGGAGAGG 745 |||||||| ||||| Sbjct 758 TGAGACTGAAGAGG 771 Score = 272 bits (147), Expect = 3e-72 Identities = 219/253 (87%), Gaps = 7/253 (3%) Strand=Plus/Plus Query 742 GAGGAGAAGAAAGTCGCCTTTGGTTTTGATG--GACG-TAACCGCGAGAGAGTTATTGTC 798 |||||||||||||||||| |||||||||||| | | ||| ||| | | | ||| || Sbjct 855 GAGGAGAAGAAAGTCGCCATTGGTTTTGATGATGGGGATAATCGCCACACAATTAACATC 914 Query 799 ATTGGAGAGGCTGGATACTTGAGGGGATTGGATCTCGTTGGAGATTTTGGAGACCAAGAA 858 |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 915 ATTGGAGAGGCTGGATACTTCAGGGCATTGGATCTCGTTGGAGATTTTGGAGACCAAGAA 974 Query 859 TGT-AGGACTGATCTGTGCTCTTATGTTCCAAGTTTAGTACAAATCAAGCAACCTGAAGG 917 ||| || || ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 975 TGTCAG-ACAGATCTGTGCTCTTATGTTCCAAGTTTAGTGGAAATCAAGCAACCTGAAGG 1033 Query 918 AGGGGAATCGAAACAACAAAGCGATTTAGAAAAG-TGTCGATATGATGAAAACATGTTGA 976 ||| ||| | ||||| ||||||| || || ||| | |||||||||||||||||||| || Sbjct 1034 AGGAGAAAGGGAACAAGAAAGCGAATTGGAGAAGCT-TCGATATGATGAAAACATGTCGA 1092 Query 977 GGCTTGTCTCACT 989 | ||||||| ||| Sbjct 1093 GACTTGTCTTACT 1105 > Ahg905324 jgi|Araly1|905324|Al_scaffold_0003_2452 Length=1212 Score = 329 bits (178), Expect = 2e-89 Identities = 528/690 (77%), Gaps = 52/690 (8%) Strand=Plus/Plus Query 34 GAGTCTCAGATGATCGTGATGATGGGTAACAATCTTTCTTTAACGAGTATTATTC-TCAA 92 |||||||||||||||||| |||||| | ||||||||| ||||| ||| | ||| | | || Sbjct 151 GAGTCTCAGATGATCGTGTTGATGGATTACAATCTTTGTTTAATGAGCA-TATCCATGAA 209 Query 93 T---GGAGATCCATCTATAGAGCA-TAAAGGAAAACTTCCTTGCCTTGACGAACAAGTCA 148 | ||||| ||||||| |||| | || ||| |||||| ||||||||||||||||||||| Sbjct 210 TGGAGGAGAACCATCTACAGAG-ATTAGAGGTAAACTTACTTGCCTTGACGAACAAGTCA 268 Query 149 AGATATCTCAGTTCTATCACTGCGAGGGCTTACTGCTATGCATTTTAAAAGATGATTCTA 208 |||||||||| |||| ||| |||||||| ||| || ||||||| || ||||| ||| ||| Sbjct 269 AGATATCTCAATTCTTTCATTGCGAGGGTTTATTGTTATGCATCTTGAAAGACGATACTA 328 Query 209 -GGTTTGTGGTTTGTAATCCGTATTTGGAGCAAACAAGG-TGGATCGAACCAAGATATTC 266 |||| |||||||| ||||| |||| || |||||||||| || ||| |||| |||| ||| Sbjct 329 AGGTT-GTGGTTTGGAATCCATATTGGGGGCAAACAAGGATG-ATCCAACCCAGATTTTC 386 Query 267 CCATC-GTCCACACGGATGGGA-TAGGTTCTCTTACGCTCTTGGATAC---GTGAATACG 321 || | | ||| |||| ||| | || || ||| ||||| |||||| | ||||| Sbjct 387 ACA-CAGGCCAGGCGGAACGGACT-GGATCAATTATGCTCTCGGATACTACGAGAATAAT 444 Query 322 GATTCTTGTTGTTA-C-TACAAGTTGTTGGGGTTGATAGATTATTACTAC-A-ATGC-A- 375 | | | || | | | || || ||| |||| ||||||||| ||| | || | | Sbjct 445 -AGTAA-GATGAAATCCTGTAAATTCTTGAGGTTTTTAGATTATTTTTACTATATCCCAG 502 Query 376 CACG-AG-AA-GCAA---TTCTTTT--GGTATGGAATCTACGATTTTGACTCTGATTTAT 427 | | | || | || || |||| |||||| |||||||||||||||| ||| ||||| Sbjct 503 CCCCCACCAAAGAAAAGATTTTTTTTTGGTATGAAATCTACGATTTTGACACTGGTTTAT 562 Query 428 GGACTACTCTTGATGTCACTCCGCATTGGCGTATA-GCGTTTTG-TAACCGTGGCGTTTC 485 |||| |||||||||||||| || || ||||||||| | |||| | |||| ||||||||| Sbjct 563 GGACAACTCTTGATGTCACCCCACACTGGCGTATAAG-GTTT-GATAACTATGGCGTTTC 620 Query 486 TCTTAAGGGAAGCACGTACTGGTGTGCTGCAGAAAGGAACG-TAG-ATGTCGATGAAGTC 543 ||| ||||||| ||| || ||||||||| ||||||||||| | | | | | | || Sbjct 621 TCTCAAGGGAAACACTTATTGGTGTGCTACAGAAAGGAACCCT-GCA-GACCCTTTTCTC 678 Query 544 T-TGGCCGATCGCTTAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTCTGCC 602 || |||| | | ||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 679 AATGTT-GATCACATCATCTGTTTTGACTTTACAAGTGAGAGGTTTGGTCCGCTTCTGCC 737 Query 603 TCTGCCGTTTAGTGGTGGGCATATTG-A-C-TGTATGACGTTATCTTGTGTTAGAGAAGA 659 | |||||||||| | | |||| | | | | |||| ||||||||||||| ||||| Sbjct 738 TTTGCCGTTTAGAACTACG--TATTACAACCT-TGTGACCCTATCTTGTGTTAGGGAAGA 794 Query 660 GAAGCTTGCGGTTTTACTTCAGC-ACGATG 688 ||||||||| | |||| || || |||||| Sbjct 795 GAAGCTTGCTGCTTTATTTT-GCCACGATG 823 > Ahg340580 jgi|Araly1|340580|fgenesh1_pg.C_scaffold_3000343 Length=870 Score = 287 bits (155), Expect = 1e-76 Identities = 298/364 (82%), Gaps = 22/364 (6%) Strand=Plus/Plus Query 386 AATTCTTTTGGTATGGAATCTACGATTTTGACTCTGATTTATGGACTACTCTTGATGTCA 445 |||| || || |||| |||||||||||||||||||| ||| ||||| ||||||||||||| Sbjct 294 AATT-TTATGTTATGAAATCTACGATTTTGACTCTGTTTTGTGGACGACTCTTGATGTCA 352 Query 446 CTCCGCATTGGC-G-TA-TAGCGTTTTGTAACCGTGGCG-TTTCTCTTAAGGGAAGCACG 501 |||| ||||||| | || || ||||| |||||||| ||| |||| ||| |||||| ||| Sbjct 353 CTCCACATTGGCGGATAGTACCGTTTGGTAACCGTAGCGTTTTC-CTTGAGGGAAACACT 411 Query 502 TACTGGTGTGCTGCAGAAAGGAACGT-AGATGTCGA-TGA-AGTCTTGG-C-C---GATC 553 |||| |||||| ||||||||||| | ||| || || || | | ||| | | |||| Sbjct 412 TACTATTGTGCTTCAGAAAGGAAC-TCAGAAGTGGACGGACA-CCATGGACACAAAGATC 469 Query 554 GCTTAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTCTGCCTCTGCCGTTTA 613 | ||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||| Sbjct 470 ACATAATCTGTTTTGATTATACAAAAGAGAGATTTGGACCGCTTCTACCTCTGCCGTTTA 529 Query 614 GTGGTGGGCAT-ATTGACTGTATGACGTTATCTTGTGTTAGAGAAGAGAAGCTTGCGGTT 672 | | ||| || | ||||| | |||| ||||||||||||||||||||||||||||||| | Sbjct 530 GCGCCGGGTATGA-TGACTATGTGACTTTATCTTGTGTTAGAGAAGAGAAGCTTGCGGCT 588 Query 673 TTACTT-CAGCACGATGAA-TCAAATCCATATGAGCTTGACTTATGGATTACGACCAAGA 730 |||||| | ||| | ||| | ||||| ||||||| ||||| ||||||| ||||| |||| Sbjct 589 TTACTTAC-GCATAACGAAGT-AAATCTATATGAGTTTGACATATGGATCACGACTAAGA 646 Query 731 TTGA 734 |||| Sbjct 647 TTGA 650 > Ahg477685 jgi|Araly1|477685|fgenesh2_kg.3__386__AT3G04250.1 Length=852 Score = 202 bits (109), Expect = 4e-51 Identities = 163/189 (86%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 549 CGATCGCTTAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTCTGCCTCTGCC 608 ||||| | |||||||||||||||| |||||||||||| |||| |||||||||| ||| || Sbjct 228 CGATCACATAATCTGTTTTGATTTCACAAGTGAGAGAGTTGGGCCGCTTCTGCGTCTACC 287 Query 609 GTTTAGTGGTGGGCAT-ATTGACTGTATGACGTTATCTTGTGTTAGAGAAGAGAAGCTTG 667 |||| | | ||||| | | ||||| | |||| |||||||||||||||||||||||||||| Sbjct 288 GTTTTGCGCTGGGCTTCA-TGACTATGTGACTTTATCTTGTGTTAGAGAAGAGAAGCTTG 346 Query 668 CGGTTTTACTTCAGC-ACGATGAATCAAATCCATATGAGCTTGACTTATGGATTACGACC 726 ||| ||||||| | | || | |||||||||||||||||| |||| ||||||||||||| Sbjct 347 CGGCTTTACTT-ACCCACAACGAATCAAATCCATATGAGTTTGAGATATGGATTACGACT 405 Query 727 AAGATTGAG 735 ||||||||| Sbjct 406 AAGATTGAG 414 > Ahg314297 jgi|Araly1|314297|fgenesh1_pm.C_scaffold_1003077 Length=1167 Score = 198 bits (107), Expect = 6e-50 Identities = 283/363 (78%), Gaps = 32/363 (9%) Strand=Plus/Plus Query 385 CAATTCTTTTGGTATGGAATCTACGATTTTGACTCTGATTTATGGACTACTCTTGATGTC 444 ||||| |||||||||| |||||| |||||| |||||||||||||||| |||||||||||| Sbjct 535 CAATTTTTTTGGTATGAAATCTATGATTTTAACTCTGATTTATGGACAACTCTTGATGTC 594 Query 445 ACTCCGCATTGGCGTATAGCGT-TTTGT-AACCGTGGCGTTTCTCTTAAGGGAAGCACGT 502 ||||| | ||| |||||| | ||| | || |||| ||||| || | ||||| ||| | Sbjct 595 ACTCCATACTGGTTTATAGC-TATTTCTCAA-AGTGGTGTTTCCCTCATGGGAAACACAT 652 Query 503 ACTGGTGTGCTGCAGAAAGGAACGTAGATGTCGATGAAGTCT-TGGCCGATCGC-TTAAT 560 ||||||||||| || | || | || | || | || | | | ||||| | || || Sbjct 653 ACTGGTGTGCT--AG-GA-TAA-G--GA-G-CG--GCGGT-TATAG-CGATCACATT-AT 698 Query 561 CTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTCTGCCTCTGCCGTTTAGTGGT-G 619 ||||||||||||||||| ||||||||||| |||||| ||||| |||| ||||| | | | Sbjct 699 TTGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTTTGCCTTTGCCATTTAGCGTTAG 758 Query 620 GGCAT-ATTGACTGTATGACGTTATCTTGTGTTAGAGAAGAGAAGCTTGCGGTTTTACTT 678 || || ||| | ||| ||| ||||||||||||||||||||||||||||| |||||| || Sbjct 759 GG-ATCATTCA-TGTGTGATTTTATCTTGTGTTAGAGAAGAGAAGCTTGCAGTTTTATTT 816 Query 679 CAGCACGA--TGAATCA-AATCCATATGA-GCTTGACTTATGGATTACGACCAAGATTGA 734 || ||| | || || | || |||||| | |||| ||||||||||| ||| |||| Sbjct 817 CAACACCAAATGTATTATAA---ATATGAAG-TTGAAATATGGATTACGGTTAAGCTTGA 872 Query 735 GAC 737 ||| Sbjct 873 GAC 875 > Ahg887737 jgi|Araly1|887737|Al_scaffold_0685_1 Length=858 Score = 191 bits (103), Expect = 9e-48 Identities = 161/189 (85%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 549 CGATCGCTTAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTCTGCCTCTGCC 608 ||||| | |||||||||||||||| |||||||||||| |||| |||||||||| ||| || Sbjct 234 CGATCACATAATCTGTTTTGATTTCACAAGTGAGAGAGTTGGGCCGCTTCTGCGTCTACC 293 Query 609 GTTTAGTGGTGGGCAT-ATTGACTGTATGACGTTATCTTGTGTTAGAGAAGAGAAGCTTG 667 |||| | | ||||| | | ||||| | |||| |||||||||||||||||||||||||||| Sbjct 294 GTTTTGCGCTGGGCTTCA-TGACTATGTGACTTTATCTTGTGTTAGAGAAGAGAAGCTTG 352 Query 668 CGGTTTTACTTCAGC-ACGATGAATCAAATCCATATGAGCTTGACTTATGGATTACGACC 726 ||| ||||||| | | || | ||||| ||||||||||| |||| ||||||||||||| Sbjct 353 CGGCTTTACTT-ACCCACAACGAATCCCATCCATATGAGTTTGAGATATGGATTACGACT 411 Query 727 AAGATTGAG 735 ||||||||| Sbjct 412 AAGATTGAG 420 > Ahg930412 jgi|Araly1|930412|scaffold_302869.1 Length=665 Score = 187 bits (101), Expect = 1e-46 Identities = 179/216 (83%), Gaps = 7/216 (3%) Strand=Plus/Plus Query 510 TGCTGCAGAAAGGAACGTAGATGTCGATGAAGTCTTGGCCGATCGCTTAATCTGTTTTGA 569 |||||| |||| ||||| | || | || |||||||| || | || |||||||||| || Sbjct 135 TGCTGCTGAAAAGAACGCAAATTTAGAAGAAGTCTTCACCTCTAGCATAATCTGTTTCGA 194 Query 570 TTTTACAAGTGAGAGATTTGGTCCGCTTCTGCCTCTGCCGTTTAGTG--G-TGGGCAT-A 625 |||||||||||||||||||||||||||||||| |||| |||||||| | ||||||| | Sbjct 195 TTTTACAAGTGAGAGATTTGGTCCGCTTCTGCATCTGTCGTTTAGTACTGATGGGCATCA 254 Query 626 TTGACTGTATGACGTTATCTTGTGTTAGAGAAGAGAAGCTTGCGGTTTTACTTCAGC-AC 684 | |||| ||| || || |||||||||||||||||||| ||||||||||||||||| | || Sbjct 255 T-GACTATATTACCTTGTCTTGTGTTAGAGAAGAGAAACTTGCGGTTTTACTTCA-CTAC 312 Query 685 GATGAATCAAATCCATATGAGCTTGACTTATGGATT 720 | ||||||||||||| ||||| ||| |||||| Sbjct 313 AACAAATCAAATCCATACAAGCTTTTCTTTTGGATT 348 > Ahg925736 jgi|Araly1|925736|scaffold_201297.1 Length=1231 Score = 165 bits (89), Expect = 6e-40 Identities = 445/607 (73%), Gaps = 63/607 (10%) Strand=Plus/Plus Query 38 CTCAGATGATCGTGATGATGGGTAACAATCTTTCTTTAACGAGTATTATTCTCAATGGAG 97 ||| ||||||| ||||||||| | ||||| ||| ||||| | | ||| | ||||||| | Sbjct 205 CTCGGATGATCATGATGATGGATTACAATGTTTATTTAATGGGCATTGTCCTCAATGAAA 264 Query 98 ATCCATCTATAGAG-CATAAAGGA-AAACTTCCTTGCCT---TGA--C-GAACAAGTCAA 149 ||||||| | |||| | | | || |||||| | ||||| || | ||||||||||| Sbjct 265 ATCCATCCACAGAGTC-TCTA-GATAAACTTACGTGCCTACAAGATTCAGAACAAGTCAA 322 Query 150 GATATCTC-AGTTCTATCACTGCGAGGGCTTACTGCTATGCAT-TTTAAA-A-GATGATT 205 || | || || ||| ||| || ||||| ||| || ||||||| || ||| | |||||| Sbjct 323 AATTTATCAAG-TCTTTCATTGTGAGGGTTTATTGTTATGCATCTTGAAAGATGATGATA 381 Query 206 CT-AGGTTTGTGGTTTGTAATCCGTATTTGGAGCAAACAAGGTGGAT-CGAACCA-AGA- 261 || ||| |||| ||||| ||||||||||||| |||||| || ||||| | ||||| | | Sbjct 382 CTAAGG-TTGTTGTTTGGAATCCGTATTTGGGGCAAACGAGATGGATCCAAACCAGAAAG 440 Query 262 TATTCCCATCGTCCA---CACGGATGGGA-TAG-GTTCT-C--TTACGCTCTTGGATACG 313 |||| ||| || | | | ||| ||| || || | | |||||||| |||||| Sbjct 441 TATTACCA-CG-CTAGTGGAGGGAAAGGACGAGATTTTTACAAGTACGCTCTAGGATACA 498 Query 314 TGAAT-A-CG-----G--ATTCTTGTTGTTA---CTACAAGTTGTTGGGGTTGATAGATT 361 ||| | || | | |||||| | || ||| || | ||| |||| |||||| Sbjct 499 AAAATAATCGCAAAAGAAAATCTTGTCG-TAGCCCTA-AA-ATCTTGAGGTTTATAGATG 555 Query 362 ATTACTACAATGCACACG-AGAAGCAATTCTTT-TGGTATGGAATCTACGATTTTGACTC 419 ||| | || | || || |||| | | |||| |||||| ||||||||||||||| || Sbjct 556 ATTTCAACCGT-TACCCGAAGAA-CCCTGCTTTACGGTATGAAATCTACGATTTTGATTC 613 Query 420 TGATTTATGGACTACTCTTGATGTCACTCCGCATTGGCGTATAGCGTTTTGTAACCGTGG 479 ||||||||||||||||||||||||| ||| || ||||||||| || | ||| ||| Sbjct 614 TGATTTATGGACTACTCTTGATGTCTTTCCACACTGGCGTATA---TTGTCCCACCATGG 670 Query 480 CGTTTCTCTTAAGGGAAGCACGTACTGGTGTGCTGCAGAAAGGAACGTAGATGTCGATGA 539 | ||||||| ||||||| ||| |||||| | | || |||| |||||| | | | | | Sbjct 671 CATTTCTCTCAAGGGAAACACTTACTGGGGCGTTGTAGAACGGAACGCA-AAGGC-A--C 726 Query 540 AGTC-TTGGCCGATCGCTTAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTC 598 | | || | || |||||||||||||||||||||||||||||||||| ||| ||| Sbjct 727 A--CATTAAAC-AT---ATAATCTGTTTTGATTTTACAAGTGAGAGATTTGGACCGTTTC 780 Query 599 TGCCTCT 605 ||||||| Sbjct 781 TGCCTCT 787 > Ahg479757 jgi|Araly1|479757|fgenesh2_kg.3__2458__AT3G22421.1 Length=1236 Score = 139 bits (75), Expect = 3e-32 Identities = 234/304 (77%), Gaps = 37/304 (12%) Strand=Plus/Plus Query 395 GGTATGGAATCTACGATTTTGACTCTGATTTATGGACTACTCTTGATGTCACTCCGCATT 454 |||||| ||||||||||||||||| | |||||||||| |||||||| || ||||| || | Sbjct 533 GGTATGAAATCTACGATTTTGACTTTAATTTATGGACGACTCTTGACGTTACTCCACACT 592 Query 455 GGCG--T--A-TA--G-C---GTTTT-GTAACCGTGGCGTTTCTCTTAAGGG-AAGCACG 501 || | | | || | | ||||| ||||| ||| ||| |||| ||||| || ||| Sbjct 593 GGTGTTTAAATTATTGCCGTGGTTTTCGTAACTATGGTGTTACTCTCAAGGGTAA-CACT 651 Query 502 TACTGGTGTGCT-GCAGAAAGGAACGT-AGATGTCGATGAAGTCTTGGCCGATCGCTTAA 559 |||||||||||| || ||||||| | | | | | || || || |||| | ||| Sbjct 652 TACTGGTGTGCTATAAG-AAGGAAC-TCAAACG-CTTTG-CGTGTT----GATCACATAA 703 Query 560 TCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTCTGCCTCTGCCGTTTAGT-G-G 617 |||||||||||||||||||||||||||| ||||||||| || | ||||||||| | | | Sbjct 704 TCTGTTTTGATTTTACAAGTGAGAGATTCGGTCCGCTTATGTATTTGCCGTTTATTAGAG 763 Query 618 -T-GG-G--CATATTGACTGTATGACGT-TATCTTGTGTTAGAGAAGAGAAGCTTGCGGT 671 | || | || | | || | |||| | ||||||||||||||||||||||||||||||| Sbjct 764 ATAGGTGTGCA-A--GCCT-TGTGAC-TCTATCTTGTGTTAGAGAAGAGAAGCTTGCGGT 818 Query 672 TTTA 675 |||| Sbjct 819 TTTA 822 Score = 122 bits (66), Expect = 3e-27 Identities = 101/118 (86%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 872 TGTGCTCTTATGTTCCAAGTTTAGTACAAATCAAGCAACCTGAAGGAGGGGAATCGAAAC 931 ||||||||||||||||||||||||||||||||||| |||||| |||||| || ||||| Sbjct 1094 TGTGCTCTTATGTTCCAAGTTTAGTACAAATCAAGAAACCTGCAGGAGGCCAAAGGAAAC 1153 Query 932 AACAAAGC-GATTTAGAAAAGTGTCGATATGATGAAAACATGTTGAGGCTTGTCTCAC 988 |||||||| | ||||||||| |||||| |||| ||||||| | ||| ||| || ||| Sbjct 1154 AACAAAGCAG-TTTAGAAAAACGTCGATGTGATCAAAACATATCGAGACTTATCGCAC 1210 > Ahg923074 jgi|Araly1|923074|scaffold_104355.1 Length=1079 Score = 80.5 bits (43), Expect = 2e-14 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 555 CTTAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTCTGCCTCTGCCGTTT 612 ||| ||||||||||||||||||||||||||||||| |||| ||| |||||||||||| Sbjct 633 CTTGATCTGTTTTGATTTTACAAGTGAGAGATTTGAACCGCGTCTTCCTCTGCCGTTT 690 > Ahg937320 jgi|Araly1|937320|scaffold_501511.1 Length=1211 Score = 76.8 bits (41), Expect = 3e-13 Identities = 49/53 (92%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 556 TTAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTCTGCCTCTGCC 608 ||| ||||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 655 TTACTCTGTTTTGATTTTACAAGTGAGAGATTTGGACCGCCCCTGCCTCTGCC 707 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36902983656 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5