BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23690.1
Length=1774
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905436 jgi|Araly1|905436|Al_scaffold_0003_2564 1770 0.0
Ahg491205 jgi|Araly1|491205|fgenesh2_kg.7__638__AT4G34530.1 161 1e-38
> Ahg905436 jgi|Araly1|905436|Al_scaffold_0003_2564
Length=1125
Score = 1770 bits (958), Expect = 0.0
Identities = 1076/1130 (95%), Gaps = 19/1130 (2%)
Strand=Plus/Plus
Query 358 ATGAACATGGACAAGGAAACAGAGCAAACCCTAAATTACTTACCTTTGGGTCAGAGCGAT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAACATGGACAAGGAAACAGAGCAAACCCTAAATTACTTACCTTTGGGTCAGAGCGAT 60
Query 418 CCCTTTGGCAATGGCAATGAAGGAACAATTGGAGATTTCCTTGGAAGATACTGCAACAAC 477
|||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||
Sbjct 61 CCCTTTGGCAATGGCAGTGAAGGAACTATCGGAGATTTCCTTGGAAGATACTGCAACAAC 120
Query 478 CCTCAGGAGATTTCACCGTTAACTCTACAATCCTTCTCTCTGAATTCTCAGATCTCCGAG 537
||||| |||||||||||||||||||||||||| |||||| |||||||||||||||| |||
Sbjct 121 CCTCAAGAGATTTCACCGTTAACTCTACAATCTTTCTCTATGAATTCTCAGATCTCTGAG 180
Query 538 AATTTCCCAATCTCTGGTGGAATCAGATTCCCTCCATATCCAGGTCAATTTGGATCCGAT 597
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 181 AATTTCCCAATCTCTGGTGGAATCCGATTCCCTCCGTATCCAGGTCAATTTGGATCCGAT 240
Query 598 CGTGAA--------T-TTGGGTCACAACCAACAACGCAGGAGAGTAACAAGAGCTCTTTG 648
|| ||| | |||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 241 CGAGAATTTGGGGTTCTTGGGTCACAACCAACAACGCAAGAGAGTAACAAAAGCTCGTTG 300
Query 649 TTGGATCCAGATTCAGTTTCGGATCGAGTTCACACCACGAAATCTAACTCTAGAAAGAGG 708
||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||
Sbjct 301 TTGGATCCAGATTCAGTTTCGGATCGAGTTCACACCACGAAATCTCACTCCAGGAAGAGG 360
Query 709 AAGTCGATTCCTAGTGGTAATGGCAAGGAGTCTCCAGCTTCATCGTCTCTTACAGCTTCC 768
|| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 361 AAATCGATTCCTAGTGGTAATGGCAAGGAGTCTCCAGCTTCTTCCTCTCTTACAGCTTCC 420
Query 769 AATTCAAAGGTTTCAGGAGAGAATGGTGGATCTAAAGGTGGGAAGAGAAGCAAGCAAGAT 828
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 AATTCAAAGGTTTCAGGAGAGAATGGTGGATCTAAAGGTGGGAAGAGAAGTAAGCAAGAT 480
Query 829 GTA-GCTGGGAGTAGTAAAAACGGAGTAGAGAAGTGCGATAGTAAAGGCGACAATAAGGA 887
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 G-AGGCTGGGAGTAGTAAAAACGGAGTAGAGAAGTGCGATAGTAAAGGCGACAATAAGGA 539
Query 888 CGATGCTAAGCCTCCTGAGGCGCCTAAAGATTATATTCATGTCAGAGCTAGAAGGGGTCA 947
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 CGATGCTAAGCCTCCTGAGGCGCCTAAAGATTATATTCATGTTAGAGCTAGAAGGGGTCA 599
Query 948 AGCAACTGATAGCCATAGTCTTGCTGAAAGAGCAAGAAGAGAAAAGATTAGTGAGAGAAT 1007
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 600 AGCAACTGATAGCCATAGTCTTGCTGAAAGAGCAAGAAGAGAAAAGATCAGCGAGAGAAT 659
Query 1008 GACGTTGCTTCAGGATCTGGTTCCTGGTTGCAACCGGATTACAGGGAAAGCAGTCATGCT 1067
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 660 GACGTTGCTTCAGGATCTGGTTCCTGGTTGCAACCGGATTACAGGGAAAGCGGTCATGCT 719
Query 1068 TGATGAAATTATAAATTATGTGCAGTCCTTGCAGAGACAAGTTGAGTTCTTGTCCATGAA 1127
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGACGAAATTATAAATTATGTGCAGTCCTTGCAGAGACAAGTTGAGTTCTTGTCCATGAA 779
Query 1128 GCTGGCTACCGTAAATCCAAGGATGGAGTTTAATGCTAATGCTTCTTTATCCACAGAGAT 1187
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 780 GCTGGCTACTGTAAATCCAAGGATGGAGTTTAATGCTAATGCTGCTTTATCCACAGAGAT 839
Query 1188 GATTCAACCGGGGGAGTCGTTAACGCAGTCTCTTTACGCAATGGCTTGCTCAGAGCAAAG 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GATTCAACCGGGGGAGTCGTTAACGCAGTCTCTTTACGCAATGGCTTGCTCAGAGCAAAG 899
Query 1248 ACTTCCATCAGCATACTATTCACTTGGCAAGAACATGCCAAGATTCTCAGACACACAATT 1307
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 900 ACTTCCATCAGCATACTATTCCCTTGGCAAGAACATGCCCAGATTCTCAGACACACAATT 959
Query 1308 CCCCTCAAACGATGGATTTGTTCACA-CTGAGACACCAGGATTCTGGGAAAATAATGACC 1366
|||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||
Sbjct 960 CCCCTCAAACGATGGATTTGTTCA-AGCTGAGACACCGGGATTCTGGGAAAATAATGACC 1018
Query 1367 TGCAAAGCATTGTTCAGATGGGTTTTGGAGATATCCTCCAGCAACAGAGcaacaacaaca 1426
|||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1019 TGCAAAGCATTGTTCAAATGGGGTTTGGAGATATCC---AGCAACAGAGCAACAACAACA 1075
Query 1427 ac---aacaacTGTTCTGAGCCAACGCTTCAGATGAAGCTTGAACCATAG 1473
|| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 1076 ACTGTAAGAAAAGTTCTGAGCCAACGCTTCAGATGAAGCTTGAACCATAG 1125
> Ahg491205 jgi|Araly1|491205|fgenesh2_kg.7__638__AT4G34530.1
Length=1213
Score = 161 bits (87), Expect = 1e-38
Identities = 190/239 (79%), Gaps = 10/239 (4%)
Strand=Plus/Plus
Query 916 GATTATATTCATG-TCAGAGCTA-GAAGGGGTCAAGCAACTGATAGCCATAGTC-TTGCT 972
||||||||||||| || | || | | | || ||||| |||||||| || || | | ||
Sbjct 508 GATTATATTCATGTTC-GTGC-ACGTCGAGGCCAAGCCACTGATAGTCACAG-CATAGCA 564
Query 973 GAAAGAGCAAGAAGAGAAAAGATTAGTGAGAGAATGACGTTGCTTCAGGATCTGGTTCCT 1032
|| | | |||||||||||||||||||||||||||| ||| || || ||| ||||||||
Sbjct 565 GAGCGGGTTAGAAGAGAAAAGATTAGTGAGAGAATGAAGTTTCTACAAGATTTGGTTCCT 624
Query 1033 GGTTGCAACCGGATTACAGGGAAAGCAGTCATGCTTGATGAAATTATAAATTATGTGCAG 1092
|| ||| || ||| ||||| ||||||| |||||||||||||| || || ||||| |||
Sbjct 625 GGATGCGACAAGATCACAGGCAAAGCAGGGATGCTTGATGAAATCATTAACTATGTTCAG 684
Query 1093 TC-CTTGCAGAGACAAGTTGAGTTCTTGTCCATGAAGCTGGCTACC-GTAAATCCAAGG 1149
|| ||| ||||||||| |||||||||| || |||||||| || | || |||||||||
Sbjct 685 TCTCTT-CAGAGACAAATTGAGTTCTTATCGATGAAGCTAGC-AGTTGTGAATCCAAGG 741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66581748260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5