BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23700.1
Length=1485
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479886 jgi|Araly1|479886|fgenesh2_kg.3__2587__AT3G23700.1 1932 0.0
> Ahg479886 jgi|Araly1|479886|fgenesh2_kg.3__2587__AT3G23700.1
Length=1408
Score = 1932 bits (1046), Expect = 0.0
Identities = 1174/1235 (95%), Gaps = 12/1235 (1%)
Strand=Plus/Plus
Query 7 ACCTTCAATCTCCGTGGCTTTTTTGCTCTACCGCGCAACAATGGCGGTTTTTAGTGGCGC 66
|||||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||
Sbjct 2 ACCTTCAATCTCCGCGGCTTTTTTGCTCTGCCGCGTAACAATGGCGGTTTTCAGTGGCGC 61
Query 67 TACTACTTTAGGTTCTGTTTCATTCGCCTCTCATCTCTTCGACCAACAATCCACTTTCCT 126
|||||| || |||||||| || ||| | ||||||||||| ||||||||||||||||||||
Sbjct 62 TACTACATTGGGTTCTGTATCTTTCTCTTCTCATCTCTTTGACCAACAATCCACTTTCCT 121
Query 127 CTCTTGCCCACTTAGACTCCTTCCTTCCTCGT-CT--TCTTCTTCTTC--CA-ATAGAAA 180
|||||||||||||||||||||||||||||| | || || |||||| | || |||||||
Sbjct 122 CTCTTGCCCACTTAGACTCCTTCCTTCCTCTTCCTCATCCTCTTCTCCGTCACATAGAAA 181
Query 181 CTCTCTCGTCTGCATAGTCAAATCCTTCTCAAGCTCCGCCACAGCAGATACCGATAGAAA 240
| ||||| ||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 182 CCCTCTCCTCTGCATTGTCAAATCTTTCTCAAGCTCCGCCACCGCAGATACCGATAGAAA 241
Query 241 CTCCGATCAATCAGCCTCTTCCTCAGTCCTCTCCGCTTCCAATTCTCTTCTCCGTGATAC 300
||||||||||||| |||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 242 CTCCGATCAATCAACCTCTTCCTCAGTCCTCTCCGCCTCCAATTCTCTTCTCCGAGACAC 301
Query 301 CTCCGACGAAGCTTCAGCTGCAGGACCAAGCGATTGGAAAACAGCAAAAGCTTATTGTAA 360
|||||| | | | ||||| ||||| || ||||||||||| |||||||||||||| ||
Sbjct 302 CTCCGATG-A---T--GCTGCTGGACCCAGTGATTGGAAAACGGCAAAAGCTTATTGCAA 355
Query 361 AAGTGGTGATACATTTGAAGGTGAAGTTCAAGGCTTTAATGGTGGTGGCTTACTTATTCG 420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 356 AAGTGGTGATACATTTGAAGGTGAAGTTCAAGGCTTTAATGGTGGAGGCTTACTTATTCG 415
Query 421 TTTTCATTCTCTTGTGGGTTTTCTTCCTTATCCACAATTAAGTCCTTCCCGTTCTTGTAA 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 416 TTTTCATTCTCTTGTGGGTTTTCTTCCTTATCCACAATTAAGTCCTTCACGTTCTTGTAA 475
Query 481 AGAGCCTCAGAAAAGTATTCATGAGATAGCTAAGACTTTGGTTGGTTCTAAACTTCCTGT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 AGAGCCTCAGAAAAGTATTCATGAGATAGCTAAGACTTTGGTTGGTTCTAAACTTCCTGT 535
Query 541 AAAGGTTGTTCAAGCTGATGAGGAAAATAGAAAGTTGATTTTATCTGAGAAGTTAGCATT 600
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 536 GAAGGTTGTTCAAGCTGATGAGGAAAATAGAAAATTGATTTTATCTGAGAAGTTAGCATT 595
Query 601 ATGGCCAAAGTATTCACAAAACGTTAATGTTGGGGATGTGTTTAACGGAAGAGTAGGTTC 660
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 596 ATGGCCAAAGTATTCACAAAACGTTAATGTTGGGGATGTGTTTAATGGAAGAGTAGGTTC 655
Query 661 TGTTGAGGACTATGGTGCCTTTATCCACTTGCGTTTTGATGATGGTCTTTATCATTTAAC 720
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 656 TGTTGAGGACTATGGTGCCTTTATCCACTTGCGTTTCGATGATGGTCTTTATCATTTAAC 715
Query 721 TGGACTAGTGCATGTCTCCGAAGTATCATGGGATTACGTTCAAGATGTTAGGGATGTACT 780
||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||
Sbjct 716 CGGACTAGTGCATGTCTCTGAAGTATCGTGGGATTATGTTCAAGATGTTAGGGATGTGCT 775
Query 781 ACGCGATGGTGACGAGGTTCGGGTTATAGTCACGAATATTGACAAAGAGAAATCAAGGAT 840
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 ACGCGATGGTGATGAGGTTCGGGTTATAGTCACGAATATTGACAAAGAGAAATCAAGGAT 835
Query 841 TACACTATCCATCAAACAACTAGAAGATGATCCTCTTCTAGAAACATTAGACAAAGTGAT 900
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TACACTATCTATCAAACAACTAGAAGATGATCCTCTTCTAGAAACATTAGACAAAGTGAT 895
Query 901 TTTGAAGGACAGTTCTACTGGATCTCCTTCGCTAAGCTCGAACAATGGGGATACAATTGA 960
|||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 896 TTTGAAGGACAGCTCTAGTGGATCTCCTTCGCTAAGCTTGAACAATGGGGATACAATTGA 955
Query 961 ACCTCTTCCAGGGCTAGAAACAATACTTGAAGAGCTTTTAAAGGAAGATGGAATAGAAGC 1020
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 956 ACCTCTTCCAGGGCTAGAAACAATACTTGAAGAACTTTTAAAGGAAGATGGAATAGAAGC 1015
Query 1021 TGTGAAAATCAACCGGCAAGGATTTGAGAAAAGAGTGGTTTCACAAGACCTACAACTTTG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TGTGAAAATCAACCGGCAAGGATTTGAGAAAAGAGTGGTTTCACAAGACCTACAACTTTG 1075
Query 1081 GCTCTCAAATACACCGCCTTCTGATGGGAAGTTTGTTCTTCTTGCCCGTGCTGGAAGACA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GCTCTCAAATACACCGCCTTCTGATGGGAAGTTTGTTCTTCTTGCCCGTGCTGGAAGACA 1135
Query 1141 GGTGCAAGAGATACACTTGACAACGTCTCTGGAACAAGGAGGAATCAAGAAAGCGCTTCA 1200
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1136 GGTGCAAGAGATACACTTGACAACGTCGCTCGAACAAGGAGGAATCAAGAAAGCGCTTCA 1195
Query 1201 GCATGTACTAGAACGCGTCCCCTAAGAACCCGAAA 1235
||||||||||||||||||||||||||||||| |||
Sbjct 1196 GCATGTACTAGAACGCGTCCCCTAAGAACCCTAAA 1230
Score = 241 bits (130), Expect = 1e-62
Identities = 168/184 (91%), Gaps = 12/184 (7%)
Strand=Plus/Plus
Query 1281 AAACTCTTGCCAATGTAACTTCAAGT-G-G-A-GC-AG-A-G--ACTACTTCAGAAATAT 1331
||||||||| |||| ||||||||||| | | | || || | | |||||||||| |||||
Sbjct 1228 AAACTCTTGGCAATATAACTTCAAGTGGAGCAGGCAAGTAGGCAACTACTTCAG-AATAT 1286
Query 1332 TCTTAAAAGGCAAAAATGCAAATTCATTTGTATCATCATTATATGTCACACATAACACAA 1391
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1287 GCTTAAAAGGCAAAAATGCAAATTCATTTGTATCATCATTATATGTCACACATAACACAA 1346
Query 1392 ACCTATGAAAATATATGTGTATACTCAATGTTTTTAGTTACACATTATAAACTTCATTAA 1451
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1347 ACCTATGAAAATAT--GTGTATACTCGATGTTTTTAGTTACACATTATAAACTTCATTAA 1404
Query 1452 CATA 1455
||||
Sbjct 1405 CATA 1408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55573667455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5