BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23710.1
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479887 jgi|Araly1|479887|fgenesh2_kg.3__2588__AT3G23710.1 1753 0.0
> Ahg479887 jgi|Araly1|479887|fgenesh2_kg.3__2588__AT3G23710.1
Length=1140
Score = 1753 bits (949), Expect = 0.0
Identities = 1087/1150 (95%), Gaps = 23/1150 (2%)
Strand=Plus/Plus
Query 10 ATCATTTTCCCGAGAAAACT-ATGAATTCAAACATTTTCCCACCATCGAAACAACAAAAC 68
|||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATCATTTTCCCGAGAAAA-TAATGAATTCAAACATTTTCCCACCATCGAAACATCAAAAC 59
Query 69 GAGCTTAATAATATACAACAATCCTTCTCAAATCTCCAATCTCAATGCTCCAATTTACTC 128
|| || ||| ||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 60 CAG-TT--TAAAATACAACAATCCTTCTCGAATCTCCAATCTCAATGCTCCAATCTACTC 116
Query 129 CTCAACGTTTCACAAACCCTTAATCCTCTCTTCAACGCCAACACGAACAACAACAAACCT 188
| ||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 117 CACAACGTTTCGCAAACCCTTAATCCTCTCTTCAACGCCAACAAGAACAACAAC---CCT 173
Query 189 AATATATTCTCTGCTCTCAATTCGTTTCGTGATCAAGCTAAGCAAGCTTTAGATTCTAGA 248
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 AATATCTTCTCTGCTCTCAATTCGTTTCGTGATCAAGCTAAGCAAGCTTTAGATTCTAGA 233
Query 249 ATCTCTCGATTCAATTCTGGTAAGGCACCTGTCTGGGCGAGAATTTCTGACGA------- 301
|||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 234 ATCTCTCGTTTCAATTCTGGTAAGGCACCAGTTTGGGCGAGAATTTCTGACGACGTCGGT 293
Query 302 --CGGTGGTGGTGCGAGGGCTCAGGTGACGGTTCCGATTCGCGGAAGCGGGAAAGGATTA 359
|||||||||||||||| |||| ||||||| |||| |||| ||||||||||||||||||
Sbjct 294 GGCGGTGGTGGTGCGAGGACTCAAGTGACGGCTCCGGTTCGTGGAAGCGGGAAAGGATTA 353
Query 360 TCTGCTGATGCTATTGAGGAGAGATTGGCGGGAGTTCCTGTTTACGCGTTGAGTAATTCG 419
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TCGGCTGATGCTATTGAGGAGAGATTGGCGGGAGTTCCTGTTTACGCGTTGAGTAATTCG 413
Query 420 AATGAGGAGTTTGTGTTGGTTTCAGGGACTTCCTCTGGGAAATCTCTGGGTTTGTTGTTT 479
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 414 AATGAGGAATTTGTGTTGGTTTCAGGGACTTCTTCTGGGAAATCTCTGGGTTTGTTGTTT 473
Query 480 TGTAAAGAGGAAGATGCAGAGACTCTTCTTAAAGAGATGAAGAGTATGGATCCTCGTATG 539
||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||
Sbjct 474 TGTAAAGAGGAAGATGCAGAGACGCTTCTTAAACAGTTGAAGAGTATGGATCCTCGTATG 533
Query 540 AGGAAAGAAGGTTCAAAAGTTGTTGCTCTTGCTCTTAGCAAGGTGTTCCAGTTAAAAGTT 599
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 534 AGGAAAGAAGGTTCAAAAGTTGTTGCTCTTGCTCTTAGCAAGGTGTTTCAGTTAAAAGTT 593
Query 600 AATGGTGTGGCATTTAGGTTGATTCCTGAGTCTACTCAAGTGAAAAATGCCTTGAAGGAA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 AATGGTGTGGCATTTAGGTTGATTCCTGAGTCTACTCAAGTGAAAAATGCCTTGAAGGAA 653
Query 660 AGGAAAACAGCTGGTATCGATGATGATGACTTCCATGGTGTTCCGGTTTTCCAGTCAAAG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 AGGAAAACAGCTGGTATCGATGATGATGACTTCCATGGTGTTCCGGTTTTCCAGTCAAAG 713
Query 720 AGCTTGATTCTACGAAGTGAAAACATGAGTTATCGCCCTGTTTTCTTTAGAAAGGAGGAC 779
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 714 AGCTTGATTCTACGAAGTGAAAACATGAGTTATCGCCCTGTTTTCTTCAGAAAGGAGGAC 773
Query 780 TTGGAAAAATCTCTAATACGAGCGTCCAGCCAACAGAACCGACTTAACCCTGCTCTGAAA 839
|||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 774 TTGGAAAAGTCCCTAATACGAGCGTCCAGCCAACAGAACCGACTCAACCCTGCTCTGAAA 833
Query 840 CCAGGCGATATTCAGGTTGCAGTTTTCGAAGATATTGTCAAGGGAATGAGGGAAAGCACG 899
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 834 CCAGGCGATATTCAGGTTGCAGTTTTTGAAGATATTGTCAAGGGAATGAAGGAAAGCACG 893
Query 900 ACGTCAAACTGGGACGACATTGTGTTTATACCGCCTGGTTTTGAGGTTTCAACTGAGCAA 959
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 ACGTCGAACTGGGACGACATTGTGTTTATACCGCCTGGTTTTGAGGTTTCAACTGAGCAA 953
Query 960 ACACAGGAGTAAGTGAAATCCTTGGAGCATCGTAAAACCTCAACA-CAATGCTTCTCC-C 1017
|| |||||||| |||||||||||||||||||||||||||||||| ||| ||||||| |
Sbjct 954 ACCCAGGAGTAGGTGAAATCCTTGGAGCATCGTAAAACCTCAACCTCAAA-CTTCTCCAC 1012
Query 1018 TTTTCATATTCCTATCTCATCATTCAACAACTTGATGAACACAGCGAGTTGGAAATAGCG 1077
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1013 TTT-CATATTCCTATCTCATCATTCAACAACTTGATGAACACAGAGAGTTGGAAATAGCG 1071
Query 1078 TTGATGATGTTAACTCCATTAACATCCTTCTCCAATCTCT-GCTTTTTCTATGTCATCTT 1136
|||||||||||| |||||||||||||||||||||||| || ||||| |||||||| ||||
Sbjct 1072 TTGATGATGTTACCTCCATTAACATCCTTCTCCAATC-CTTGCTTTCTCTATGTCGTCTT 1130
Query 1137 ATGAGTTTTT 1146
||||| ||||
Sbjct 1131 ATGAGGTTTT 1140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44680058724
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5