BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23715.1
Length=288
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319082 jgi|Araly1|319082|fgenesh1_pm.C_scaffold_3002098 379 5e-105
> Ahg319082 jgi|Araly1|319082|fgenesh1_pm.C_scaffold_3002098
Length=291
Score = 379 bits (205), Expect = 5e-105
Identities = 263/291 (90%), Gaps = 3/291 (1%)
Strand=Plus/Plus
Query 1 ATGAGGTGTGTTACCTCGTTTGTAGTTTTGTGTATTCTCATGTTCCTTGTGGTAAACAAT 60
|||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGAGGTGTGCTACATCGTTTGTAGTTTTGTGTATTCTCATGTTCCTTGTGTTAAACAAT 60
Query 61 GTTAAAGTAGATGTGAAAGCACAACGAAGGAAACCTGTTTGTAAATTGACTGGTGTCCTA 120
||||||||||||||||||||||||||| |||||||| | |||||| |||||||| | |||
Sbjct 61 GTTAAAGTAGATGTGAAAGCACAACGACGGAAACCTCTGTGTAAAATGACTGGTCTTCTA 120
Query 121 AACCCTGGAAAATGTCCCACAGCTATACATGATGCAAGCAACTTGTGTAGTCGCAAATTG 180
| |||||||||||| |||| | |||| |||||||||||||||||||||| |||| |||||
Sbjct 121 ACCCCTGGAAAATGCCCCATAACTATCCATGATGCAAGCAACTTGTGTAATCGCCAATTG 180
Query 181 GCTTCACCTAATATGACATTTAAGCGTTGCGACTGTCAAAACACTG--AA-TGGCGAGGG 237
|| || ||| ||| ||||||||||||||||||||||||||||||| || |||||||||
Sbjct 181 GCGTCGCCTGATAGGACATTTAAGCGTTGCGACTGTCAAAACACTATTAAATGGCGAGGG 240
Query 238 AAAGACCACTATCAATGCACATGTTATATAAAACTCCCTTGCAACCAATAG 288
||||||||||||||||||||||||||| | | ||||||||||||| |||||
Sbjct 241 AAAGACCACTATCAATGCACATGTTATCTGAGACTCCCTTGCAACGAATAG 291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10073075496
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5