BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23730.1
Length=1075
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479888 jgi|Araly1|479888|fgenesh2_kg.3__2589__AT3G23730.1 1703 0.0
Ahg493497 jgi|Araly1|493497|fgenesh2_kg.7__2930__AT4G14130.1 710 0.0
> Ahg479888 jgi|Araly1|479888|fgenesh2_kg.3__2589__AT3G23730.1
Length=1054
Score = 1703 bits (922), Expect = 0.0
Identities = 1013/1057 (96%), Gaps = 6/1057 (1%)
Strand=Plus/Plus
Query 16 TCACATCTCCTCGAACAAACAAATTATAAACCCATTTTCCTTCATAAATTTCTAAAATAA 75
|||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||
Sbjct 1 TCACATCTCCTCGAACAAACAAATCAT-AACCCATTTTCCTTCATAAATCTCTAAAATAA 59
Query 76 AACCCCTTAAACTTTCATTCACATCATCCAACCCCCAATGGGTCGAATCTTGAACCGTAC 135
|||||||| |||||||||| ||| |||||||||||||||||||| ||||||||||| |||
Sbjct 60 AACCCCTT-AACTTTCATTTACACCATCCAACCCCCAATGGGTCAAATCTTGAACCTTAC 118
Query 136 CGTGTTAATGACTCTTCTAGTCGTAACAATGGCCGGAACAGCATTCTCCGGTAGCTTCAA 195
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 119 CGTGTTAATGACTCTTCTAGTCGTAACAATGGTCGGAACAGCATTCTCCGGTAGCTTCAA 178
Query 196 CGAAGAGTTTGACTTAACTTGGGGTGAACACAGAGGCAAAATCTTCAGTGGAGGAAAAAT 255
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 179 CGAAGAGTTTGACTTAACTTGGGGTGAACAAAGAGGCAAAATCTTCAGTGGAGGCAAGAT 238
Query 256 GTTGTCACTCTCACTAGACCGGGTTTCCGGGTCGGGTTTTAAATCCAAGAAAGAATATTT 315
||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 239 GTTGTCATTGTCACTAGACCGGGTTTCCGGGTCGGGTTTTAAGTCCAAGAAAGAATATTT 298
Query 316 GTTCGGAAGAATCGACATGCAGCTTAAACTCGTCGCCGGTAACTCCGCTGGAACCGTCAC 375
|| ||||||||||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 299 ATTTGGAAGAATCGACATGCAACTTAAACTCGTCGCCGGTAACTCTGCCGGAACCGTCAC 358
Query 376 TGCCTACTACTTGTCATCGGAAGGACCAACACACGACGAGATAGACTTTGAGTTTCTTGG 435
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 359 TGCCTACTACTTGTCATCGGAAGGACCAACACACGACGAGATAGATTTTGAGTTTCTTGG 418
Query 436 TAATGAAACAGGGAAGCCTTATGTTCTTCACACTAATGTATTTGCTCAAGGCAAAGGAAA 495
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 419 TAATGAAACAGGGAAGCCTTATGTTCTTCACACTAATGTCTTTGCACAAGGCAAAGGAAA 478
Query 496 CAGAGAACAACAGTTTTATCTCTGGTTTGATCCAACCAAGAACTTCCACACTTATTCTCT 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CAGAGAACAACAGTTTTATCTCTGGTTTGATCCAACCAAGAACTTCCACACTTATTCTCT 538
Query 556 TGTCTGGAGACCACAACACATCATATTTATGGTAGATAATGTTCCAATCAGAGTATTCAA 615
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 539 TGTTTGGAGACCTCAACACATCATATTTATGGTAGATAATGTTCCAATCAGAGTATTTAA 598
Query 616 CAATGCAGAGCAACTTGGTGTTCCATTTCCCAAGAACCAACCAATGAAGATATACTCGAG 675
|||||||||| ||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 599 CAATGCAGAGAAACTTGGCGTACCATTTCCCAAGAACCAACCAATGAAGATTTACTCGAG 658
Query 676 TTTATGGAATGCAGATGATTGGGCTACAAGAGGTGGTTTGGTTAAGACAGATTGGTCTAA 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTTATGGAATGCAGATGATTGGGCTACAAGAGGTGGTTTGGTTAAGACAGATTGGTCTAA 718
Query 736 AGCTCCTTTCACAGCTTACTACAGAGGCTTTAACGCTGCAGCTTGTACTGTTTCTTCAGG 795
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 719 AGCTCCTTTCACAGCTTACTACAGAGGCTTTAACGCTGCGGCTTGTACTGTTTCTTCAGG 778
Query 796 GTCATCTTTCTGTGATCCTAAGTTTAAGAGTTCTTTTACTAATGGTGAATCTCAAGTGGC 855
|||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||
Sbjct 779 GTCATCTTTCTGTGATCCTAAGTTTAAGAGCTCTTTTACTAATGGTGAGTCACAAGTAGC 838
Query 856 TAATGAGCTTAATGCTTATGGGAGAAGAAGATTAAGATGGGTTCAGAAGTATTTTATGAT 915
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 839 TAATGAGCTTAATGCTTATGGGAGAAGAAGATTGAGATGGGTTCAAAAATATTTTATGAT 898
Query 916 TTATGATTATTGTTCTGATTTAAAAAGGTTTCCTCAAGGATTCCCACCAGAGTGTAGGAA 975
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 899 TTATGATTATTGTTCTGATTTGAAAAGGTTTCCTCAAGGATTCCCACCAGAGTGTAGGAA 958
Query 976 GTCTAGAGTCTAAAAACCAATGATTCTCTCTTTGTTGTTGTTTAGTGCAAATTAAATTCT 1035
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GTCTAGAGTCTAAAA-CCAATGATTCTCTCTTTGTTGTTGTTTAGTGCAAATTAAATTCT 1017
Query 1036 CTTTGTTGTTTCT-TT--AATAAATTGATTTGATTTT 1069
||||||||||| | || |||||||||||||||||||
Sbjct 1018 CTTTGTTGTTTTTGTTTTAATAAATTGATTTGATTTT 1054
> Ahg493497 jgi|Araly1|493497|fgenesh2_kg.7__2930__AT4G14130.1
Length=1056
Score = 710 bits (384), Expect = 0.0
Identities = 664/798 (83%), Gaps = 23/798 (3%)
Strand=Plus/Plus
Query 196 CGAAGAGTTTGACTTAACTTGGGGTGAACACAGAGGCAAAATCTTCAGTGGAGGAAAAAT 255
||| ||||||||| | ||||||||||| ||||||||||||||||||| ||||| | ||
Sbjct 169 CGACGAGTTTGACCTCACTTGGGGTGACCACAGAGGCAAAATCTTCAACGGAGGGACGAT 228
Query 256 GTTGTCACTCTCACTAGACCGGGTTTCCGGGTCGGGTTTTAAATCCAAGAAAGAATATTT 315
|||||| | ||| | ||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 229 GTTGTCTTTGTCATTGGACCGAGTTTCCGGGTCGGGTTTCAAATCCAAGAAAGAGTATTT 288
Query 316 GTTCGGAAGAATCGACATGCAGCTTAAACTCGTCGCCGGTAACTCCGCTGGAACCGTCAC 375
||| || | ||||| |||||||| |||||||||||||| ||||| || || ||||||||
Sbjct 289 GTTTGGTCGGATCGATATGCAGCTCAAACTCGTCGCCGGAAACTCTGCCGGCACCGTCAC 348
Query 376 TGCCTACTACTTGTCATCGGAAGGACCAACACACGACGAGATAGACTTTGAGTTTCTTGG 435
||| |||||||||||||| ||||| ||||||| ||||||||||||||||||||||| ||
Sbjct 349 TGCTTACTACTTGTCATCTCAAGGAGCAACACATGACGAGATAGACTTTGAGTTTCTAGG 408
Query 436 TAATGAAACAGGGAAGCCTTATGTTCTTCACACTAATGTATTTGCTCAAGGCAAAGGAAA 495
|| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |
Sbjct 409 GAACGAAACAGGGAAGCCTTATGTTCTTCACACCAATGTCTTTGCTCAAGGGAAAGGAGA 468
Query 496 CAGAGAACAACAGTTTTATCTCTGGTTTGATCCAACCAAGAACTTCCACACTTATTCTC- 554
|||||| |||||||||||||||||||| ||||| |||||||| ||||||||||| || |
Sbjct 469 CAGAGAGCAACAGTTTTATCTCTGGTTCGATCCCACCAAGAATTTCCACACTTACTC-CA 527
Query 555 TTGTCTGGAGACCACAACACATCATATT-TATGGTAGATAATGTT-CCAATCAGAGTATT 612
||||||||||||| |||||||||||||| | |||| || ||| || || || ||||| ||
Sbjct 528 TTGTCTGGAGACCCCAACACATCATATTCT-TGGTGGACAAT-TTACCCATTAGAGTCTT 585
Query 613 CAACAATGCAGAGCAACTTGGTGTTCCATTTCCCAA-GAACCAACCAATGAAGATATACT 671
||||||||||||| || |||||||| |||||||| || |||||| |||| ||| ||||
Sbjct 586 TAACAATGCAGAGCGGCTCGGTGTTCC-TTTCCCAAAGAGCCAACCCATGAGGATCTACT 644
Query 672 CGAGTTTATGGAATGCAGATGATTGGGCTACAAGAGGTGGTTTGGTTAAGACAGATTGGT 731
||||| | |||||||||||||||||||| || ||||| ||| | || ||||| || ||||
Sbjct 645 CGAGTCTGTGGAATGCAGATGATTGGGCCACGAGAGGCGGTCTAGTCAAGACTGACTGGT 704
Query 732 CTAAAGCTCCTTTCACAGCTTACTACAGAGGCTTTAACGCTGCAGCTTGTACTGTTTCTT 791
| || |||||||||||||||||||||||||| || ||||| || ||||| || || ||||
Sbjct 705 CCAAGGCTCCTTTCACAGCTTACTACAGAGGATTCAACGCAGCGGCTTGCACCGTCTCTT 764
Query 792 CAGGGTCATCTTTCTGTGATCCTAAGTTTAAGAGTTCTTTTACTAATGGTGAATCT-CAA 850
|||| | | || | ||||| || |||||||| | | ||||| ||| | |||
Sbjct 765 CAGG--C-TGTTAC------CCTAAATTCAAGAGTTCACTCGGTGATGGTAAAT-TGCAA 814
Query 851 GTGGCTAAT-GAGCTTAATGCTTATGGGAGAAGAAGATTAAGATGGGTTCAGAAGTATTT 909
||||| || ||||| ||||||||||| || || ||| | |||||||||||||| || ||
Sbjct 815 GTGGC-AAGCGAGCTCAATGCTTATGGCAGGAGGAGACTCAGATGGGTTCAGAAATACTT 873
Query 910 TATGATTTATGATTATTGTTCTGATTTAAAAAGGTTTCCTCAAGGATTCCCACCAGAGTG 969
||||| ||| ||||||| |||||| | |||||||| |||| |||||||| ||||| ||
Sbjct 874 CATGATCTATAATTATTGCTCTGATCTCAAAAGGTTCCCTCGTGGATTCCCTCCAGAATG 933
Query 970 TAGGA-AGTCTAGAGTCT 986
| || | || |||||||
Sbjct 934 CAAGAGA-TCCAGAGTCT 950
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40029062850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5