BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23740.1
Length=2021
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479889 jgi|Araly1|479889|fgenesh2_kg.3__2590__AT3G23740.1 1783 0.0
> Ahg479889 jgi|Araly1|479889|fgenesh2_kg.3__2590__AT3G23740.1
Length=1953
Score = 1783 bits (965), Expect = 0.0
Identities = 1262/1397 (90%), Gaps = 54/1397 (4%)
Strand=Plus/Plus
Query 630 GGACAGTGTCTAT-GATAAAGATTCAACCGGAAGCTTCTGTAGAGACACCAGCCCTTTGA 688
|||||| || | | |||||||||||| |||||||||| ||| || |||||||||||||||
Sbjct 594 GGACAGGGT-TTTCGATAAAGATTCAGCCGGAAGCTTATGTGGAAACACCAGCCCTTTGA 652
Query 689 AGAGTGTTATTGCAT-CCACCCCTAACAA-AAATGCTGCATTCTCTAGGGGTAAGCTATT 746
||| |||| ||||| || |||| ||||| | | ||||||| ||||||| | ||| ||||
Sbjct 653 CGAGGGTTAATGCATCCCTCCCC-AACAAGAGA-GCTGCATGCTCTAGGCGCAAGTTATT 710
Query 747 TAAGACACCAGGTTCTGTTAATTACAGAAGAATGCTTCCATATCTCAAAGATATTCAAGA 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TAAGACACCAGGTTCTGTTAATTACAGAAGAATGCTTCCATATCTCAAAGATATTCAAGA 770
Query 807 GGATAATCC--TT-ATCCTCAAAAGAACACAGAGGAGGTTATTTCATCACCGATGTTAAA 863
|||||||| || ||| ||||||||||||||| ||||| | | ||||| ||||||| ||
Sbjct 771 AGATAATCCTTTTGATCATCAAAAGAACACAGAAGAGGTAACTCCATCATCGATGTT-AA 829
Query 864 CTCTGAGTCTGATAATGAAGGGACACAGGAAGTGGTGACATCAAATGTTACTAGAGAATC 923
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 -TC----TCTGAGAATGAAGGGACACAGGAAGTGGTGACATCAAATGTTACTAGAGAATC 884
Query 924 AGGTACAAGCTCTGATGAAAACGAAGAGCCCCTTCCTTGTGAACGTGTACCTGTAAATCT 983
|| |||| ||||| |||||||||||||||||||| ||||||||||| || ||||| ||
Sbjct 885 AGATACATGCTCTAATGAAAACGAAGAGCCCCTTTCTTGTGAACGTCTATCTGTATTTCC 944
Query 984 AGAACAGTCTGATCCTGACAAGGAACAAGAAACACAGATTAAGCATGTCATCCCAGATAC 1043
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 945 AGAACAGTCTGATCCTGACAAAGAACAAGAAACACAGATTAAGCATGTCATCTCAGATAC 1004
Query 1044 TGAAAATAATTTGGGCTCTGAGATCCCATTATCATCTCCTCTTGTTGGTTCAAGAAGTTC 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 TGAAAATAATTTGGGCTCTGAGATCCCATTATCATCTCCTCTTGTTGGTTCAAGAAGTTC 1064
Query 1104 AAGTGAAGTTAATTCATCTGCATTGCACAACACATTTGTAGACAATTTGGTGGGCGAAGA 1163
|||||| ||| ||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 1065 AAGTGAGGTTGCTTCATCTGCTTTGCACAACACATTTCTCGACAATTTGGTGGGCGAAGG 1124
Query 1164 AAACATGAATGGTGCAGAGATAACAGAAGCAAAGATCAGTGCAGAGGAACTAGAGGCACA 1223
||||||||||||||||||||||||||||||||| | ||||| |||| ||||||||||| |
Sbjct 1125 AAACATGAATGGTGCAGAGATAACAGAAGCAAAAACCAGTGTAGAGCAACTAGAGGCAAA 1184
Query 1224 TAGTTCAGATGCAACAGCTGAACTGGTTGACCCTTCTGTTATATTGGCAACTCCTTCCTC 1283
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1185 TACATCAGATGCAACAGCTGAACTGATTGACCCTTCTGTTATATTGGCAACTCCTCCCT- 1243
Query 1284 CT-TTTCTCCCTCGAAAGGAATTCTGAAAAGAAGTATGAGAGGATGTAGAGGGATATGCT 1342
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 CTATTTCTCCCTCGAAAGGAATTCTGAAAAGAAGTATGAGAGGATGTAGAGGGATATGCT 1303
Query 1343 CTTGTTTGAACTGCTCCTCCTTCCGTCTACACGCCGAAAGAGCATTTGAATTCTCAAGAA 1402
||||||||||||||||||||||||| ||| | || |||||||||||||||||||||||||
Sbjct 1304 CTTGTTTGAACTGCTCCTCCTTCCGCCTAAATGCAGAAAGAGCATTTGAATTCTCAAGAA 1363
Query 1403 ATCAGTTACAAGATACTGAAGTAATGGTTTTGGATCTAGTTGGAGAAATATCTCATCTCA 1462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 ATCAGTTACAAGATACTGAAGTAATGGTTTTGGATCTAGTTGGAGAAATATCTCATCTCA 1423
Query 1463 GGGATTTGTTGGAGAAATATAATTCAGCAGATCACAGTGAACCCTACAAAAGTCAGGCTG 1522
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1424 GGGATATGTTGGAGAAATATAATTCAGCAGATCACAGTGAATCCTACAAAAGTCAGGCTG 1483
Query 1523 GTGAAGCTTCGAAGAGAGCTTGTGAGGCTGCAGAGCTTGCAAAAAGCCGCCTCCACCAGA 1582
| |||||| | |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1484 GAGAAGCTGCAAAGAGAGCTTGTGAGGCTGCAGAGCTTGCAAAAAGCCGTCTCCATCAGA 1543
Query 1583 TGAACGATGACCT-TCAAATTCACTACAGAATCCCCAACGAACAACGAGCAAGAGTGAAA 1641
|||||||||| | |||| |||| | ||||||||||||||||||||||||||||||||||
Sbjct 1544 TGAACGATGAT-TATCAAGTTCATTGCAGAATCCCCAACGAACAACGAGCAAGAGTGAAA 1602
Query 1642 TTTGCTCATTATATACACGAGAAGACGATTGTAAAAGCATCCGAACCTAACAAATTGATC 1701
|||||||||||| |||||||||||||||| | || | | | || || | ||||||
Sbjct 1603 TTTGCTCATTATGTACACGAGAAGACGAT-G-AAC--C-T---A-CC-AA-A--TTGATC 1649
Query 1702 AGTAGATCACCCTGAAGCAACTAGGATGGGTACTTTTT--AATGTCATTATCTGTCTCCA 1759
| ||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||
Sbjct 1650 ACTAGATCACCCTGAAGCAACTAGGATGGATGCTTTTTTTAATGTCATTATCTGTCTCCA 1709
Query 1760 GATTATCCAGTTTCATGCTCttttttttttttAATTTTGAAAAGTGAAAGAGGTATTACT 1819
|||||||||||| |||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 1710 GATTATCCAGTTACATGCT-TTTTT-------AATTTTGAAAAGTGAAA-AGGTATTACT 1760
Query 1820 AGCTGTCTTTTTCTTTTTGTCACCA---TCCTAAACATAGTAGAAGCATAGATCAAAGTG 1876
||||||||||||||| | ||||||| |||||| || ||||||||||||||||||| ||
Sbjct 1761 AGCTGTCTTTTTCTTAT-GTCACCACCATCCTAAGCAGAGTAGAAGCATAGATCAAATTG 1819
Query 1877 CCATTATACATATAGACCATGTGATCATATTTATTACACt-tttttttttC-T-TTT-CA 1932
|| |||||||||||| |||||||| ||||||||||||| | |||||||||| | ||| ||
Sbjct 1820 CCTTTATACATATAGTCCATGTGACCATATTTATTACAGTATTTTTTTTTCCTGTTTTCA 1879
Query 1933 AAAACACACATCTTGTTCTATGTACATACTCAAAGACTATAAAAGCAAAACCTCCTGTGA 1992
|||| | ||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1880 AAAA-A-ACATCTTGTTCTATGTACATAAACAAAGACTATAAAAGCAAA-CCTCCTGTGA 1936
Query 1993 TCTCTTAGCAAGTTGCA 2009
|||||||||||||||||
Sbjct 1937 TCTCTTAGCAAGTTGCA 1953
Score = 259 bits (140), Expect = 5e-68
Identities = 212/245 (87%), Gaps = 12/245 (5%)
Strand=Plus/Plus
Query 367 CAAACGACGCCACCAGATTCCGAATTGTT----A--G---CTATCAGTGAAGAGATCAAT 417
|||||||||||||| |||||||||||||| | | ||||| ||||||||||||||
Sbjct 283 CAAACGACGCCACCGGATTCCGAATTGTTAAGCAGTGTACCTATCCGTGAAGAGATCAAT 342
Query 418 GGATCAGTAGTGAACAAAAGTGATACTAATCTCTGGAGAAAATCGGTTCTTCTTCCATGT 477
||||||| |||||| ||||||||||||||| | || || ||||||||||| | |||||||
Sbjct 343 GGATCAGCAGTGAAGAAAAGTGATACTAATTTATGTAGCAAATCGGTTCTCCATCCATGT 402
Query 478 TCTCGACCTAAGATATTCAAGAATACTGGTCCTTTCAGCTATAAGAGACTGCTTCCATAC 537
||||||||||||||||||||||| |||||| |||| |||||||||||| |||||||||||
Sbjct 403 TCTCGACCTAAGATATTCAAGAACACTGGTTCTTTTAGCTATAAGAGATTGCTTCCATAC 462
Query 538 TTGATGCAAGCTTCAGATGATGGAACATCATCATCAAGCCGGTGCTCAAAGTCTTTGAGT 597
|||| ||||||| |||||||||||||||||||| | ||| ||||||||| |||| ||
Sbjct 463 TTGAAGCAAGCTGCAGATGATGGAACATCATCA--A-GCCAGTGCTCAAAACCTTTAAGC 519
Query 598 CAGAA 602
|||||
Sbjct 520 CAGAA 524
Score = 233 bits (126), Expect = 3e-60
Identities = 234/282 (83%), Gaps = 23/282 (8%)
Strand=Plus/Plus
Query 16 ATGGCGGAATCAAATCAAATCCCTCGGAAGAGAATGCGATTCTCGTCTTC-TCCAGCTAC 74
||||||||||||||||| ||| |||||||||| ||||||||||||||| | | |||||||
Sbjct 1 ATGGCGGAATCAAATCAGATCTCTCGGAAGAGGATGCGATTCTCGTCTCCAT-CAGCTAC 59
Query 75 AGAGATCCTCCCTCAAAGAAAATCACAAAACCAACGAATCGCAACCACCGTATCTCAAAG 134
|||||||||| ||| |||||||| ||| || |||||||||| || | ||
Sbjct 60 AGAGATCCTCACTCTAAGAAAATTACAGAATCAACGAATCG----CA----A-CT----- 105
Query 135 CAGAAACCGATCTAGCGTCCATCATTCACCATCACTCTATCAAAAAATCGATTCTAAAAT 194
| ||| || || ||||||| ||||||||||||||| |||||||||||| |||||
Sbjct 106 --G---CCG--CTCGCCTCCATCAATCACCATCACTCTATGGAAAAATCGATTCGAAAAT 158
Query 195 CACACCTACGTATCCACGAGCCACCATCAAAGATATTCGTCTCCGACGCGTCTTCTCTCC 254
| | |||||||||||||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 159 CGTTCGTACGTATCCACGAGTCACCATCAAGGATATTCGTCTCCGACGCATCTTCTCTCC 218
Query 255 AACTCCGATCTCCACCGACTGCGAATGTAACTGCAAAGATAA 296
|| |||||||||||||||||||||||||||| |||||| |||
Sbjct 219 AAATCCGATCTCCACCGACTGCGAATGTAACGGCAAAGGTAA 260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75990038775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5