BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G23740.1 Length=2021 Score E Sequences producing significant alignments: (Bits) Value Ahg479889 jgi|Araly1|479889|fgenesh2_kg.3__2590__AT3G23740.1 1783 0.0 > Ahg479889 jgi|Araly1|479889|fgenesh2_kg.3__2590__AT3G23740.1 Length=1953 Score = 1783 bits (965), Expect = 0.0 Identities = 1262/1397 (90%), Gaps = 54/1397 (4%) Strand=Plus/Plus Query 630 GGACAGTGTCTAT-GATAAAGATTCAACCGGAAGCTTCTGTAGAGACACCAGCCCTTTGA 688 |||||| || | | |||||||||||| |||||||||| ||| || ||||||||||||||| Sbjct 594 GGACAGGGT-TTTCGATAAAGATTCAGCCGGAAGCTTATGTGGAAACACCAGCCCTTTGA 652 Query 689 AGAGTGTTATTGCAT-CCACCCCTAACAA-AAATGCTGCATTCTCTAGGGGTAAGCTATT 746 ||| |||| ||||| || |||| ||||| | | ||||||| ||||||| | ||| |||| Sbjct 653 CGAGGGTTAATGCATCCCTCCCC-AACAAGAGA-GCTGCATGCTCTAGGCGCAAGTTATT 710 Query 747 TAAGACACCAGGTTCTGTTAATTACAGAAGAATGCTTCCATATCTCAAAGATATTCAAGA 806 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 711 TAAGACACCAGGTTCTGTTAATTACAGAAGAATGCTTCCATATCTCAAAGATATTCAAGA 770 Query 807 GGATAATCC--TT-ATCCTCAAAAGAACACAGAGGAGGTTATTTCATCACCGATGTTAAA 863 |||||||| || ||| ||||||||||||||| ||||| | | ||||| ||||||| || Sbjct 771 AGATAATCCTTTTGATCATCAAAAGAACACAGAAGAGGTAACTCCATCATCGATGTT-AA 829 Query 864 CTCTGAGTCTGATAATGAAGGGACACAGGAAGTGGTGACATCAAATGTTACTAGAGAATC 923 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 830 -TC----TCTGAGAATGAAGGGACACAGGAAGTGGTGACATCAAATGTTACTAGAGAATC 884 Query 924 AGGTACAAGCTCTGATGAAAACGAAGAGCCCCTTCCTTGTGAACGTGTACCTGTAAATCT 983 || |||| ||||| |||||||||||||||||||| ||||||||||| || ||||| || Sbjct 885 AGATACATGCTCTAATGAAAACGAAGAGCCCCTTTCTTGTGAACGTCTATCTGTATTTCC 944 Query 984 AGAACAGTCTGATCCTGACAAGGAACAAGAAACACAGATTAAGCATGTCATCCCAGATAC 1043 ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 945 AGAACAGTCTGATCCTGACAAAGAACAAGAAACACAGATTAAGCATGTCATCTCAGATAC 1004 Query 1044 TGAAAATAATTTGGGCTCTGAGATCCCATTATCATCTCCTCTTGTTGGTTCAAGAAGTTC 1103 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1005 TGAAAATAATTTGGGCTCTGAGATCCCATTATCATCTCCTCTTGTTGGTTCAAGAAGTTC 1064 Query 1104 AAGTGAAGTTAATTCATCTGCATTGCACAACACATTTGTAGACAATTTGGTGGGCGAAGA 1163 |||||| ||| ||||||||| ||||||||||||||| | ||||||||||||||||||| Sbjct 1065 AAGTGAGGTTGCTTCATCTGCTTTGCACAACACATTTCTCGACAATTTGGTGGGCGAAGG 1124 Query 1164 AAACATGAATGGTGCAGAGATAACAGAAGCAAAGATCAGTGCAGAGGAACTAGAGGCACA 1223 ||||||||||||||||||||||||||||||||| | ||||| |||| ||||||||||| | Sbjct 1125 AAACATGAATGGTGCAGAGATAACAGAAGCAAAAACCAGTGTAGAGCAACTAGAGGCAAA 1184 Query 1224 TAGTTCAGATGCAACAGCTGAACTGGTTGACCCTTCTGTTATATTGGCAACTCCTTCCTC 1283 || ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 1185 TACATCAGATGCAACAGCTGAACTGATTGACCCTTCTGTTATATTGGCAACTCCTCCCT- 1243 Query 1284 CT-TTTCTCCCTCGAAAGGAATTCTGAAAAGAAGTATGAGAGGATGTAGAGGGATATGCT 1342 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1244 CTATTTCTCCCTCGAAAGGAATTCTGAAAAGAAGTATGAGAGGATGTAGAGGGATATGCT 1303 Query 1343 CTTGTTTGAACTGCTCCTCCTTCCGTCTACACGCCGAAAGAGCATTTGAATTCTCAAGAA 1402 ||||||||||||||||||||||||| ||| | || ||||||||||||||||||||||||| Sbjct 1304 CTTGTTTGAACTGCTCCTCCTTCCGCCTAAATGCAGAAAGAGCATTTGAATTCTCAAGAA 1363 Query 1403 ATCAGTTACAAGATACTGAAGTAATGGTTTTGGATCTAGTTGGAGAAATATCTCATCTCA 1462 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1364 ATCAGTTACAAGATACTGAAGTAATGGTTTTGGATCTAGTTGGAGAAATATCTCATCTCA 1423 Query 1463 GGGATTTGTTGGAGAAATATAATTCAGCAGATCACAGTGAACCCTACAAAAGTCAGGCTG 1522 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1424 GGGATATGTTGGAGAAATATAATTCAGCAGATCACAGTGAATCCTACAAAAGTCAGGCTG 1483 Query 1523 GTGAAGCTTCGAAGAGAGCTTGTGAGGCTGCAGAGCTTGCAAAAAGCCGCCTCCACCAGA 1582 | |||||| | |||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 1484 GAGAAGCTGCAAAGAGAGCTTGTGAGGCTGCAGAGCTTGCAAAAAGCCGTCTCCATCAGA 1543 Query 1583 TGAACGATGACCT-TCAAATTCACTACAGAATCCCCAACGAACAACGAGCAAGAGTGAAA 1641 |||||||||| | |||| |||| | |||||||||||||||||||||||||||||||||| Sbjct 1544 TGAACGATGAT-TATCAAGTTCATTGCAGAATCCCCAACGAACAACGAGCAAGAGTGAAA 1602 Query 1642 TTTGCTCATTATATACACGAGAAGACGATTGTAAAAGCATCCGAACCTAACAAATTGATC 1701 |||||||||||| |||||||||||||||| | || | | | || || | |||||| Sbjct 1603 TTTGCTCATTATGTACACGAGAAGACGAT-G-AAC--C-T---A-CC-AA-A--TTGATC 1649 Query 1702 AGTAGATCACCCTGAAGCAACTAGGATGGGTACTTTTT--AATGTCATTATCTGTCTCCA 1759 | ||||||||||||||||||||||||||| | |||||| |||||||||||||||||||| Sbjct 1650 ACTAGATCACCCTGAAGCAACTAGGATGGATGCTTTTTTTAATGTCATTATCTGTCTCCA 1709 Query 1760 GATTATCCAGTTTCATGCTCttttttttttttAATTTTGAAAAGTGAAAGAGGTATTACT 1819 |||||||||||| |||||| ||||| ||||||||||||||||| |||||||||| Sbjct 1710 GATTATCCAGTTACATGCT-TTTTT-------AATTTTGAAAAGTGAAA-AGGTATTACT 1760 Query 1820 AGCTGTCTTTTTCTTTTTGTCACCA---TCCTAAACATAGTAGAAGCATAGATCAAAGTG 1876 ||||||||||||||| | ||||||| |||||| || ||||||||||||||||||| || Sbjct 1761 AGCTGTCTTTTTCTTAT-GTCACCACCATCCTAAGCAGAGTAGAAGCATAGATCAAATTG 1819 Query 1877 CCATTATACATATAGACCATGTGATCATATTTATTACACt-tttttttttC-T-TTT-CA 1932 || |||||||||||| |||||||| ||||||||||||| | |||||||||| | ||| || Sbjct 1820 CCTTTATACATATAGTCCATGTGACCATATTTATTACAGTATTTTTTTTTCCTGTTTTCA 1879 Query 1933 AAAACACACATCTTGTTCTATGTACATACTCAAAGACTATAAAAGCAAAACCTCCTGTGA 1992 |||| | ||||||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct 1880 AAAA-A-ACATCTTGTTCTATGTACATAAACAAAGACTATAAAAGCAAA-CCTCCTGTGA 1936 Query 1993 TCTCTTAGCAAGTTGCA 2009 ||||||||||||||||| Sbjct 1937 TCTCTTAGCAAGTTGCA 1953 Score = 259 bits (140), Expect = 5e-68 Identities = 212/245 (87%), Gaps = 12/245 (5%) Strand=Plus/Plus Query 367 CAAACGACGCCACCAGATTCCGAATTGTT----A--G---CTATCAGTGAAGAGATCAAT 417 |||||||||||||| |||||||||||||| | | ||||| |||||||||||||| Sbjct 283 CAAACGACGCCACCGGATTCCGAATTGTTAAGCAGTGTACCTATCCGTGAAGAGATCAAT 342 Query 418 GGATCAGTAGTGAACAAAAGTGATACTAATCTCTGGAGAAAATCGGTTCTTCTTCCATGT 477 ||||||| |||||| ||||||||||||||| | || || ||||||||||| | ||||||| Sbjct 343 GGATCAGCAGTGAAGAAAAGTGATACTAATTTATGTAGCAAATCGGTTCTCCATCCATGT 402 Query 478 TCTCGACCTAAGATATTCAAGAATACTGGTCCTTTCAGCTATAAGAGACTGCTTCCATAC 537 ||||||||||||||||||||||| |||||| |||| |||||||||||| ||||||||||| Sbjct 403 TCTCGACCTAAGATATTCAAGAACACTGGTTCTTTTAGCTATAAGAGATTGCTTCCATAC 462 Query 538 TTGATGCAAGCTTCAGATGATGGAACATCATCATCAAGCCGGTGCTCAAAGTCTTTGAGT 597 |||| ||||||| |||||||||||||||||||| | ||| ||||||||| |||| || Sbjct 463 TTGAAGCAAGCTGCAGATGATGGAACATCATCA--A-GCCAGTGCTCAAAACCTTTAAGC 519 Query 598 CAGAA 602 ||||| Sbjct 520 CAGAA 524 Score = 233 bits (126), Expect = 3e-60 Identities = 234/282 (83%), Gaps = 23/282 (8%) Strand=Plus/Plus Query 16 ATGGCGGAATCAAATCAAATCCCTCGGAAGAGAATGCGATTCTCGTCTTC-TCCAGCTAC 74 ||||||||||||||||| ||| |||||||||| ||||||||||||||| | | ||||||| Sbjct 1 ATGGCGGAATCAAATCAGATCTCTCGGAAGAGGATGCGATTCTCGTCTCCAT-CAGCTAC 59 Query 75 AGAGATCCTCCCTCAAAGAAAATCACAAAACCAACGAATCGCAACCACCGTATCTCAAAG 134 |||||||||| ||| |||||||| ||| || |||||||||| || | || Sbjct 60 AGAGATCCTCACTCTAAGAAAATTACAGAATCAACGAATCG----CA----A-CT----- 105 Query 135 CAGAAACCGATCTAGCGTCCATCATTCACCATCACTCTATCAAAAAATCGATTCTAAAAT 194 | ||| || || ||||||| ||||||||||||||| |||||||||||| ||||| Sbjct 106 --G---CCG--CTCGCCTCCATCAATCACCATCACTCTATGGAAAAATCGATTCGAAAAT 158 Query 195 CACACCTACGTATCCACGAGCCACCATCAAAGATATTCGTCTCCGACGCGTCTTCTCTCC 254 | | |||||||||||||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 159 CGTTCGTACGTATCCACGAGTCACCATCAAGGATATTCGTCTCCGACGCATCTTCTCTCC 218 Query 255 AACTCCGATCTCCACCGACTGCGAATGTAACTGCAAAGATAA 296 || |||||||||||||||||||||||||||| |||||| ||| Sbjct 219 AAATCCGATCTCCACCGACTGCGAATGTAACGGCAAAGGTAA 260 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75990038775 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5