BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23760.1
Length=751
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479891 jgi|Araly1|479891|fgenesh2_kg.3__2592__AT3G23760.1 1000 0.0
> Ahg479891 jgi|Araly1|479891|fgenesh2_kg.3__2592__AT3G23760.1
Length=686
Score = 1000 bits (541), Expect = 0.0
Identities = 645/693 (93%), Gaps = 16/693 (2%)
Strand=Plus/Plus
Query 22 TCAAGCGACATGGTCTTAAAACCAATCCATTCCTTCATCGTTATCCTCCTCCTCGTTCTC 81
|||||||||||||||| ||||||| |||| ||||||||||||| |||||||||| |||
Sbjct 1 TCAAGCGACATGGTCTCAAAACCACTCCACTCCTTCATCGTTA---TCCTCCTCGTCCTC 57
Query 82 TCCGTCGGTGACAAAATATCCGCCGGTACTGAGCCGGA----GA-A-GGAGCCAGTTCCT 135
|||| ||||||| ||| | |||||| || ||||||||| || | |||||| |||||
Sbjct 58 TCCGCCGGTGACCAAACAGCCGCCGTTAATGAGCCGGAGCTGGAGATGGAGCCGGTTCCG 117
Query 136 GCGGTATGGCCGGAGCAGTTCCACGCGTTGATGTTGATGAACAAATCAGGGTCATTGGAG 195
|||| ||||||||||||||| |||||||||||||||||||||||||||||| | ||||||
Sbjct 118 GCGGCATGGCCGGAGCAGTTTCACGCGTTGATGTTGATGAACAAATCAGGGGCCTTGGAG 177
Query 196 ATTGTGGATCTTTGGTATGACTGGGTCAATGGACGTAACTTTAACATCATTCAGAAGCAG 255
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 178 ATTGTGGATCTTTGGTACGACTGGGTCAATGGACGTAACTTTAACATCATTCAGAAGCAA 237
Query 256 CTTGGTAAGCTCACTTATGACCTCGAATGGAACAATGGCACTTCTTTCTACTACACTCTT 315
|||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 238 CTTGGTAAACTTACTTATGACCTCGAATGGAACAATGGCACTTCTTTTTACTACACTCTC 297
Query 316 GACGCTTCTAAAACTTGTCGCACCGTTCA-TTTCGAGGTTGGAATCTTG-AGACCAAATT 373
|||||||||| |||||||||||||||||| ||| ||||||||||||||| || |||||||
Sbjct 298 GACGCTTCTAGAACTTGTCGCACCGTTCACTTT-GAGGTTGGAATCTTGAAG-CCAAATT 355
Query 374 GGCTAGATGGAGCAAAGTATATGGGTCAACGACATGTAAATGGGTTTTTATGCAACGTAT 433
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 356 GGCTAGATGGAGCAAAGTATTTGGGTCAACGACATGTAAATGGTTTTTTATGCAACGTAT 415
Query 434 GGGAAAAAGTTGAGTTCTTATGGTACTATGAAGATGTTGTCACCAAGAGACCTGTACAGT 493
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 416 GGGAGAAAGTTGAGTTCTTATGGTACTATGAAGATGTTGTCACCAAGAGACCTGTACAAT 475
Query 494 GGATCTTCTATACAGGTAGAGAAGCTCATGTGATGACATTTGAAGTTGGAGCTGTCCTAG 553
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 476 GGATCTTCTATACAGGTAGAGAAGCTCATGTGATGACATTTGATGTTGGAGCTGTCCTAG 535
Query 554 AAGACGAGAAATGGCAGGCTCCTGTATATTGTTTCCACAATGAGAAGAAAGAAGTACAAT 613
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 536 AAGACGAGAAATGGCAGGCTCCTGTCTATTGTTTCCACAATGAGAAGAAAGAAGTACAAT 595
Query 614 GAGTAAATGATTTTGTGTTTCATT-TCTATGTAGAGTTTTGGGCATCTTTTGAATATATA 672
|||||| ||||||||||||||||| | | |||||||||||||| ||||||| ||||||||
Sbjct 596 GAGTAATTGATTTTGTGTTTCATTAT-T-TGTAGAGTTTTGGGTATCTTTTAAATATATA 653
Query 673 TCAACCGTTCAATGAGGAGGTCATTTTCGTTTT 705
|||||||||||||||||||||||||||||||||
Sbjct 654 TCAACCGTTCAATGAGGAGGTCATTTTCGTTTT 686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27677237742
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5