BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23770.1
Length=1793
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479892 jgi|Araly1|479892|fgenesh2_kg.3__2593__AT3G23770.1 2261 0.0
Ahg493503 jgi|Araly1|493503|fgenesh2_kg.7__2936__AT4G14080.1 852 0.0
> Ahg479892 jgi|Araly1|479892|fgenesh2_kg.3__2593__AT3G23770.1
Length=1532
Score = 2261 bits (1224), Expect = 0.0
Identities = 1438/1541 (93%), Gaps = 15/1541 (1%)
Strand=Plus/Plus
Query 1 ATCCCAAATCACACTCACCACTCTCTCTTCTCAACATTTTTCTCCAACaaaaacaaaaaa 60
||| ||||||||||||||||||||| | |||||||||||| ||||||| |||||||||||
Sbjct 1 ATCACAAATCACACTCACCACTCTC-C-TCTCAACATTTTCCTCCAAC-AAAACAAAAAA 57
Query 61 CAATGACTCCTTTTGCTCTGTTCCTCTTCACTCTCCTTGCCCTTTCAAGTTCATGTTGCT 120
||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||| ||
Sbjct 58 CAATGTCTCCTTTTGCTCTGTTCCTCTTCACTTTCCTTGTCCTTTCAAGTTCATGTTTCT 117
Query 121 CTGCCATTGG-TCCACAAAACAACAGAACAGTGTTAGCACTTGCAAGCAGAATTGGGATC 179
|||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 118 CTGCGATTGGTTCC-CAAAACAACAGAACAGTGTTAGCACTTGCAAGCAGAATTGGAATC 176
Query 180 AACTATGGAAAATTAGGCAACAATCTTCCTTTTCCTTACCAATCAATCAACCTCATCAAA 239
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 177 AACTACGGAAAATTAGGCAACAATCTTCCTTCTCCTTACCAATCAATCAACCTCATCAAA 236
Query 240 ACCATTAAAGCAGGCCACGTCAAGCTCTATGACGCCGATCCAGAAACCCT-AAAGCTCCT 298
||| ||||||| ||||||||||||||||| || || |||||||||||||| ||| |||||
Sbjct 237 ACCCTTAAAGCTGGCCACGTCAAGCTCTACGATGCTGATCCAGAAACCCTCAAA-CTCCT 295
Query 299 CTCTACGACCAATCTTTACGTCACCATCATGGTCCCTAACAACCAGATCATCTCAATAGG 358
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CTCTAAGACCAATCTTTACGTCACCATCATGGTCCCTAACAACCAGATCATCTCAATAGG 355
Query 359 TGCTGATCAAGCCGCTGCTGATAACTGGGTCGCCACTAATGTCCTTCCTTTTC-ACCCGC 417
||||||||||||||||||||||||||||||||||| ||||||||||| | | ||||||
Sbjct 356 CGCTGATCAAGCCGCTGCTGATAACTGGGTCGCCACCAATGTCCTTCC-ATACTACCCGC 414
Query 418 AAACCCGAATCCGATTCGTCCTCGTTGGCAACGAGGTCCTCAGCTACAGTTCTGATCAAG 477
||||||||||||| |||||||||||||||||||| |||||||||||| | | |||||||
Sbjct 415 AAACCCGAATCCGGTTCGTCCTCGTTGGCAACGAAATCCTCAGCTACAATACCGATCAAG 474
Query 478 ACAAGCAAATATGGGCTAATCTTGTCCCTGCCATGCGTAAAGTAGTGAACTCTCTTAGAG 537
|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 475 ACAAGCAAATATGGGCCAATCTTGTCCCTGCCATGCGTAAAGTTGTGAATTCTCTTAGAG 534
Query 538 CTCGTGGAATTCACAACATCAAAGTTGGGACACCTCTTGCCATGGACGCTCTTCGTTCGA 597
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 535 CTCGTGGGATTCACAACATCAAAGTTGGGACTCCTCTTGCCATGGACGCTCTTCGATCGA 594
Query 598 GTTTTCCTCCTTCGAGTGGTACATTCCGGGAAGATATCGCTGTTCCGGTGATGTTACCGT 657
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 595 GTTTTCCTCCGTCGAGTGGTACATTCCGGGAAGATATCGCGGTTCCGGTGATGTTACCGT 654
Query 658 TGTTGAAGTTTCTCAATGGAACAAACTCTTTCTTCTTCCTTGATGTTTACCCTTACTTCC 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TGTTGAAGTTTCTCAATGGAACAAACTCTTTCTTCTTCCTTGATGTTTACCCTTACTTCC 714
Query 718 CTTGGTCTACTGATCCGGTTAATAACCATTTGGATTTTGCTCTGTTT-GAATCGAATTCT 776
||||||| |||||||||||||| |||||||||||||| ||||| ||| |||||||||||
Sbjct 715 CTTGGTCCACTGATCCGGTTAACAACCATTTGGATTTCGCTCT-TTTCGAATCGAATTCG 773
Query 777 ACTTATACCGATCCTCAAACCGGTTTGGTTTACACCAATCTTCTAGACCAGATGCTCGAT 836
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 ACTTATACCGATCCGCAAACCGGTTTGGTTTACACCAATCTTCTAGACCAGATGCTCGAT 833
Query 837 TCGGTTATCTTTGCGATGACCAAGCTCGGTTATCCGAATAT-CAGTCTCGCAATCTCTGA 895
|||||||||| ||||||||||||||||||||||||||| || | |||||||||||| ||
Sbjct 834 TCGGTTATCTATGCGATGACCAAGCTCGGTTATCCGAACATTCC-TCTCGCAATCTCCGA 892
Query 896 AACCGGGTGGCCTAATGACGGTGATATCCATGAAACCGGAGCTAATATTGTCAATGCCGC 955
|||||||||||||||| ||||||||||||||||| ||||||||||||| |||| |||||
Sbjct 893 AACCGGGTGGCCTAATTCCGGTGATATCCATGAAATCGGAGCTAATATTCTCAACGCCGC 952
Query 956 GACGTATAACCGGAATTTGATCAAGAAGATGACTGCTAACCCGCCACTCGGTACACCAGC 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 GACGTATAACCGGAATTTGATCAAGAAGATGACTGCTAACCCGCCACTCGGTACACCAGC 1012
Query 1016 TAGGCGCGGTGCACCTATACCGACGTTTTTGTTCTCTTTGTTCAATGAAAACCAGAAACC 1075
|||||| ||| ||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1013 TAGGCGTGGTTCACCTATACCGACGTTTTTGTTCTCCTTGTTCAATGAGAACCAGAAACC 1072
Query 1076 CGGTTCGGGAACAGAGAGACATTGGGGAATTTTGAACCCTGACGGTACACCGATCTACGA 1135
|||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 1073 CGGTTCTGGAACAGAGAGGCATTGGGGAATTTTGAATCCGGACGGTACACCGATCTACGA 1132
Query 1136 CATCGATTTCAGCGGTAGAAGATC-GTTTTCTGGTTTTGATTCGTTGCCTAAACCGAGTA 1194
|||||| |||||||||| |||||| |||| | | ||||| | ||||||||||||| ||||
Sbjct 1133 CATCGACTTCAGCGGTACAAGATCAGTTTCCAG-TTTTGGTACGTTGCCTAAACCAAGTA 1191
Query 1195 ACAATGTTCCGTTTAAAGGTAATGTATGGTGTGTGGCGGTTGATGGGGCCGATGAGGCAG 1254
|||||||||| || || || || || ||||||||||||||||||||||||||||||||||
Sbjct 1192 ACAATGTTCCCTTCAAGGGCAACGTGTGGTGTGTGGCGGTTGATGGGGCCGATGAGGCAG 1251
Query 1255 AGCTAGGGCAGGCGCTTAACTTTGCTTGCGGAAGAAGCAATGCAACATGTGCAGCGTTGG 1314
|| |||||| ||| || ||||||||||||||||||| ||||| ||| |||||||||||||
Sbjct 1252 AGTTAGGGCTGGCACTAAACTTTGCTTGCGGAAGAAACAATGAAACCTGTGCAGCGTTGG 1311
Query 1315 CTCCAGGAGGAGAATGCTATGCACCGGTGACGGTTACTTGGCATGCAAGCTATGCGTTTA 1374
| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1312 CGCCAGGGGGAGAATGCTATGCACCGGTAACGGTTACTTGGCATGCAAGCTATGCGTTTA 1371
Query 1375 GCTCGTACTGGGCTCAGTTCCGGAACCAAAGCTCTCAATGCTACTTCAATGGTTTGGCTC 1434
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1372 GCTCATACTGGGCTCAATTCCGGAACCAAAGCTCTCAATGCTACTTCAATGGTTTGGCGC 1431
Query 1435 GTGAGACCACGACCAACCCTGGAAATGAGCGTTGCAAGTTTCCTAGCGTTACATTGTGAG 1494
|||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1432 GTGAGACCACGATCAACCCTGGAAATGAGCGTTGCAAATTTCCTAGCGTTACGCTGTGAG 1491
Query 1495 GCTGCCTCGTGACTCAGGCGTGTGGAGGAAAGGATCAAAAG 1535
||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1492 GCTGCCTCGTGACACAGGCGTGTGGAGAAAAGGATCAAAAG 1532
> Ahg493503 jgi|Araly1|493503|fgenesh2_kg.7__2936__AT4G14080.1
Length=1620
Score = 852 bits (461), Expect = 0.0
Identities = 1162/1491 (78%), Gaps = 86/1491 (6%)
Strand=Plus/Plus
Query 51 aaaca-aaaaaCAATGACTCCTT-TTGCTCTGTTCCTCTTCACTCTCCTTGCCCTTTCAA 108
||||| ||| || ||| || ||| ||||| | ||||||||||| ||||| | | ||||||
Sbjct 44 AAACACAAAGAC-ATGTCT-CTTCTTGCTTTCTTCCTCTTCACCCTCCTCGTCTTTTCAA 101
Query 109 GTTCATGTTGCTCTGC--CATTGG-TCC-A---CA-AA--ACA---ACA-G--AACAGTG 152
|||||||||| || || | | || ||| | || || ||| | | | |||| ||
Sbjct 102 GTTCATGTTGTTCCGCGGC-TCGGTTCCAAGGGCATAAGTACATGCAGAGGAAAACAATG 160
Query 153 TTAGCACTT-GCAAGC-AGAATTGGGATCAACTATGGAAAATTAGGCAACAATCTTCCTT 210
||| | || || ||| || ||||| ||||||||||||| | ||| ||||| || || |
Sbjct 161 CTAG-ATTTGGCTAGCAAG-ATTGGTATCAACTATGGAAGACAAGGAAACAACCTCCCAT 218
Query 211 TTCCTTACCAATCAATCAACCTCATCAAAACCATTAAAGCAGGCCACGTCAAGCTCTATG 270
|||||||||||| |||||| |||||||| |||| ||||| || || |||||||||||||
Sbjct 219 CTCCTTACCAATCCATCAACTTCATCAAATCCATCAAAGCTGGTCATGTCAAGCTCTATG 278
Query 271 ACGCCGATCCAGAAACCCT-AAAGCTCCTCTCTAC-GACCAATCTTTACGTCACCATCAT 328
|||| |||||||| | || | | ||||||||| | |||||||| ||||||||||| |
Sbjct 279 ACGCTGATCCAGAGAGTCTCACA-CTCCTCTCT-CAAACCAATCTCTACGTCACCATAAC 336
Query 329 GGTCCCTAACAACCAGATCATCTCAAT-AGGTGCTGATCAAGCCGCTGCTGA-TAACTGG 386
||||||||| ||||||||| |||| | || | || | ||| || | ||||| || |||
Sbjct 337 AGTCCCTAACCACCAGATCACCTCACTCAGCT-CTAACCAAACCACAGCTGACGAA-TGG 394
Query 387 GTC-GCCACTAATGTCCTTCCTTTTC-ACCCGCAAACCCGAATCCGATTCGTCCTCGTTG 444
||| | || ||| ||| ||| || | | || ||||| | |||||| || ||||||||||
Sbjct 395 GTCAG-AACCAATATCC-TCCCTTACTATCCACAAACACAAATCCGCTTTGTCCTCGTTG 452
Query 445 GCAACGAGGTCCTCAGCTACAGTTCTGATCAAGACAAGCAAATATGGGCTAATCTTGTCC 504
| ||||| | || ||||| | | | | | || | | | | ||| || ||||| |
Sbjct 453 GAAACGAAATACTAAGCTATA-AT-T-A-CGGGA-ATG----TCTCGGCGAACCTTGTAC 503
Query 505 CTGCCATGCGTAAAGTAGTGAACTCTCTTAGAGC-TCGTGGAATTCACAACATCAAAGTT 563
|||| ||||| ||| | ||||| ||||| ||| | || ||| |||||||| ||||||||
Sbjct 504 CTGCGATGCGCAAAATCGTGAATTCTCTCAGA-CTTCATGGGATTCACAATATCAAAGTC 562
Query 564 GGGACACCTCTTGCCATGGACGCTCTTCGTTCGAGTTTTCCTCCTTCGAGTGGTACATTC 623
|||||||||||||||||||| |||| || || ||||||||||||| || ||||||
Sbjct 563 GGGACACCTCTTGCCATGGATTCTCTCCGGTCTTCCTTTCCTCCTTCGAACGGAACATTC 622
Query 624 CGGGAAGATATCGCTGTTCCGGTGATGTTACCGTTGTTGAAGTTTCTCAATGGAACAAAC 683
|||||||| ||| | | |||||||||||||||||| |||||||||| || |||||||||
Sbjct 623 CGGGAAGAAATCACCGGACCGGTGATGTTACCGTTGCTGAAGTTTCTTAACGGAACAAAC 682
Query 684 TCTTTCTTCTTCCTTGATGTTTACCCTTACTTCCCTTGGTCTACTGATCCGGTTAATAAC 743
|||| ||||||||| ||||| | |||||||||| |||||| | |||| | || ||
Sbjct 683 TCTTACTTCTTCCTCAATGTTCATCCTTACTTCCGTTGGTCAAAAAATCCCATGAA-CAC 741
Query 744 CA-TTTGGATTTTGCTCTGTTTGAATCG-AATTCTACTTATACCGATCCTCAAACCGGTT 801
| |||||||||||||||||| || | || || || ||||||||||||||||||||||
Sbjct 742 TAGTTTGGATTTTGCTCTGTTCCAA-GGTAACTCAACCTATACCGATCCTCAAACCGGTT 800
Query 802 TGGTTTA-CACCAATCTTCTAGACCAGATGCTCGATTCGGTTATCTTTGCGATGACCAAG 860
||||||| | |||||||||||||| ||| | ||||||||| ||||||| ||||||||
Sbjct 801 TGGTTTATCGT-AATCTTCTAGACCAAATGTTGGATTCGGTTCTCTTTGCTATGACCAAA 859
Query 861 CTCGGTTATCCGA-ATAT-CAGTCTCGCAATCTCTGAAACCGGGTGGCCTAATGACGGTG 918
|||||||| || | |||| | | ||||| ||||| |||||||| ||||||||| |||||
Sbjct 860 CTCGGTTACCC-ACATATGC-GCCTCGCGATCTCCGAAACCGGATGGCCTAATTTCGGTG 917
Query 919 ATATCCATGAAACCGGAGCTAATATTGTCAATGCCGCGACGTATAACCGGAATTTGATCA 978
| ||| | |||||||| || || ||| |||| || || || |||||||||||| ||||||
Sbjct 918 ACATCGACGAAACCGGTGCCAACATTCTCAACGCGGCTACCTATAACCGGAATCTGATCA 977
Query 979 AGAAGATGACTGCTAAC-CCGCCACTCGGTACACCAGCTAGGCGCGGTGCACCTATACCG 1037
|||||||||| || || || ||| ||||||| ||| |||| | |||| |||||||||
Sbjct 978 AGAAGATGACCGC-AAGTCCACCAATCGGTACTCCATCTAGACCCGGTTTACCTATACCT 1036
Query 1038 ACGTTT-TTGTTCTCTTTGTTCAATGAAAACCAGAAACCCGGTTCGGGAACAGAGAGACA 1096
|| ||| || ||||| || ||||| |||||||||||| ||||| |||||||| | |||||
Sbjct 1037 ACATTTGTT-TTCTCCTTATTCAACGAAAACCAGAAATCCGGTCCGGGAACACAAAGACA 1095
Query 1097 TTGGGGAATTTTGAA-CCCTGACGGTACACCGATCTACGACATCGATTTCAGCGGT-AGA 1154
||||||||| ||| | ||| |||||| |||| ||||||||||| ||||||| |||| | |
Sbjct 1096 TTGGGGAATCTTGCATCCC-GACGGTTCACCAATCTACGACATTGATTTCACCGGTCAAA 1154
Query 1155 AGATCGTTTTCTGGTTTTGATTCGTTGCCTAAACCGA-GTAACAATGTTCCGTTTAAAGG 1213
| | | || | ||||| | |||| |||||||||| | ||||| ||||| | |||||
Sbjct 1155 A-ACCCTTAACCGGTTTCAACCCGTTACCTAAACCGACG-AACAACGTTCCCTACAAAGG 1212
Query 1214 T-AATGTATGGTGTGTGGCGGTTGATGGGGCCGATGAGGCAGAGCTAGGGCAGGCGCTTA 1272
| || || ||||| || | || || || ||| | ||| | ||||| | || |||
Sbjct 1213 TCAA-GTGTGGTGCGTACCAGTCGAAGGCGCCAACGAGACTGAGCTTGA--AGAAACTTT 1269
Query 1273 -ACTTTG-CTTGCGGA-AGAAGCAATGCAACATGTGCAGCGTTGGCTCCAGG-AGGAGAA 1328
| || |||| | | |||||| | || ||||| || || ||||| || || ||||
Sbjct 1270 GAGGATGGCTTGTGCCCA-AAGCAACACCACTTGTGCGGCTTTAGCTCCTGGGAG-AGAA 1327
Query 1329 TGCTATGCA-CCGGTGACGGTT-ACTTGGCATGCAAGCTATGCGTTTAGCTCGTACTGGG 1386
|| || | | ||||| | || | ||||||||||||||| ||| |||||||||||||||
Sbjct 1328 TGTTACG-AGCCGGTCTCTATTTA-TTGGCATGCAAGCTACGCGCTTAGCTCGTACTGGG 1385
Query 1387 CTCAGTTCCGGAACCAAAGC-TCTCAATGCTACTTCAATGGTTTGGCTCGTGAGACCACG 1445
||||||| || ||||||||| | |||||| ||||||||||| ||||||| |||||| |||
Sbjct 1386 CTCAGTTTCGTAACCAAAGCAT-TCAATGTTACTTCAATGGATTGGCTCATGAGACAACG 1444
Query 1446 ACCAACCCTGGAAATGAGCGTTGCAAGTTTCCTAGCGTTACAT-TGTGAGG 1495
||||||||||||||||| |||||||||||||| |||||||| | |||||||
Sbjct 1445 ACCAACCCTGGAAATGATCGTTGCAAGTTTCCGAGCGTTAC-TCTGTGAGG 1494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67305462915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5