BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23800.1
Length=1621
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905451 jgi|Araly1|905451|Al_scaffold_0003_2579 918 0.0
Ahg330113 jgi|Araly1|330113|fgenesh1_pm.C_scaffold_7002340 414 8e-115
> Ahg905451 jgi|Araly1|905451|Al_scaffold_0003_2579
Length=633
Score = 918 bits (497), Expect = 0.0
Identities = 562/593 (95%), Gaps = 5/593 (1%)
Strand=Plus/Plus
Query 667 TCAGTACCTCATGGGGAGCCCCGGCC-GCGTTTACCAAAGGATTTGACCTCAAAGAC-GT 724
|||||||||| |||||||| || || |||||||||||||||||||||||||||||| ||
Sbjct 1 TCAGTACCTCTTGGGGAGCACC-ACCAGCGTTTACCAAAGGATTTGACCTCAAAGACAGT 59
Query 725 CTCTGATGGCTTATATGGAAAGCATCTACATGTCTATAGCTGGCCCCAAGGAGAATTGAA 784
|||||||||||| |||||||| ||||||||||||||||| |||||| |||||||||||||
Sbjct 60 CTCTGATGGCTTGTATGGAAAACATCTACATGTCTATAGTTGGCCCGAAGGAGAATTGAA 119
Query 785 ACAGATTCTTGACCTTGGTGATACCGGACTTTTACCCTTAGAGGTAAGATTCTTGCATGA 844
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 120 ACAGATACTTGACCTTGGTGATACCGGACTTTTACCCTTAGAGGTAAGATTCTTGCACGA 179
Query 845 GCCGGATAAAGCTACGGGATTTGCAGGGTGTGCGTTGTCGAGTACTTTAGTAAGATTTTT 904
||||||||||||||||||||||| ||||| ||||||||||||||| | |||||||||||
Sbjct 180 CCCGGATAAAGCTACGGGATTTGCGGGGTGCGCGTTGTCGAGTACTATGGTAAGATTTTT 239
Query 905 CAAGAACGATGATGAAACATGGAGCCACGAGGTGGCTATATCAGTTGAACCTCTGAAAGT 964
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 CAAGAACGATGATGAAACATGGAGCCACGAGGTGGCTATATCAGTGGAACCTCTGAAAGT 299
Query 965 TGAAAACTGGATTCTCCCAGAAATGCCAGGGCTTATCACCGACTTTCTAATCTCACTTGA 1024
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 TGAAAACTGGATTCTCCCAGAAATGCCAACACTTATCACCGACTTTCTAATCTCACTTGA 359
Query 1025 CGACCGATTCCTCTATTGTTCCAACTGGCTTCATGGAGATATTCGTCAGTACAACATCGA 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGACCGATTCCTCTATTGTTCCAACTGGCTTCATGGAGATATTCGTCAGTACAACATCGA 419
Query 1085 GGACCCGAAAACCCCTGTTTTAACTGGTCAAATACATGTAGGCGGGCTAGTCCAAAAGGG 1144
|||||||||||||||||||||||| |||||| |||| || ||||||||||||||||||||
Sbjct 420 GGACCCGAAAACCCCTGTTTTAACCGGTCAACTACACGTTGGCGGGCTAGTCCAAAAGGG 479
Query 1145 AAGTCTTGTCTTGGCCTTAGGAGAAGAAGGAAA-AGCATTTCAGTTTGATGTCCCTAAGA 1203
||| | |||||||||||||||||||||||| || | |||||||||| |||||||||||||
Sbjct 480 AAGCCATGTCTTGGCCTTAGGAGAAGAAGGCAAGA-CATTTCAGTTCGATGTCCCTAAGA 538
Query 1204 TCAAGGGTCAGCGTCTAAGAGGAGGTCCTCAGATGTTTCAGCTGAGCCTAGAT 1256
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TCAAGGGTCAGCGTCTAAGAGGAGGTCCTCAGATGTTTCAGCTGAGCCTAGAT 591
> Ahg330113 jgi|Araly1|330113|fgenesh1_pm.C_scaffold_7002340
Length=3174
Score = 414 bits (224), Expect = 8e-115
Identities = 470/587 (80%), Gaps = 24/587 (4%)
Strand=Plus/Plus
Query 912 GATGATGAAACATGGAGCCACGA-G---GTGGCTATATCAGTTGAACCTCTGAAAGTTGA 967
|||||||| ||||||||||| || | |||| |||||| ||| ||||||||||||||||
Sbjct 2592 GATGATGACACATGGAGCCATGAGGCAAGTGGTTATATCGGTTAAACCTCTGAAAGTTGA 2651
Query 968 AAACTGGATTCTCCCAGAAATGCCAGGGCTTATCACCGACTTTCTA-ATCTCACTTGACG 1026
|||||||||||| ||||||||||| ||||||||||||||||| || ||||| || || |
Sbjct 2652 AAACTGGATTCTTCCAGAAATGCCGGGGCTTATCACCGACTT-CTTGATCTCCCTCGATG 2710
Query 1027 ACCGATTCCTCTA-TT-GTTCCAACTGGCTTCATGGAGATATTCGTCAGTACAACATCGA 1084
|||| || |||| || || ||||||||||||||||| || |||||||||||||||||
Sbjct 2711 ACCGGTTTTTCTACTTTGTG--AACTGGCTTCATGGAGACATCCGTCAGTACAACATCGA 2768
Query 1085 GGACCCGAAAACCCCTGTTTTAACTGGTCAAATACATGTAGGCGGGCTAGTCCAAAAGGG 1144
||||| |||| ||| || ||||| || ||||| || || || || | ||||||||
Sbjct 2769 AGACCCTAAAAACCCGGTCTTAACGGGACAAATTTGGGTCGGAGGATTACTACAAAAGGG 2828
Query 1145 AAGTC-TTGTCTTGGCC-TTAGGAGAAGAAGGAAAAGCATTT-C-AGTTTGATGTCCCTA 1200
|||| || | ||| || |||||||| || || || || | | ||||| || ||
Sbjct 2829 TAGTCCTTA-CAAGGCTGTT-GGAGAAGATGGTAA--CACTTACCAATTTGACGTTCCGC 2884
Query 1201 AGATCAAGGGTCAG-CGTCTAAGAGGAGGTCCTCAGATGTTTCAGCTGAGCCTAGATGGG 1259
|||||||||| || | |||| ||| ||| ||| ||||| | || || ||||| || |||
Sbjct 2885 AGATCAAGGGGAAGTC-TCTACGAGCAGGACCTTAGATGATCCAACTAAGCCTCGACGGG 2943
Query 1260 AAGCGATTGTACGTGACGAACTCGCTGTTTAGTGTTTGGGACAGACAGTTTTACCCGGAA 1319
|| ||||||||| ||| |||||||| ||||| | |||||| | |||||||||||||||
Sbjct 2944 AAAAGATTGTACGCGACAAACTCGCTATTTAGCGCGTGGGACCGTCAGTTTTACCCGGAA 3003
Query 1320 CTTGTGGAGAAAGGGTCACACATG-TTGCAGATAGATGTTGATACAGATAAAGGTGGTCT 1378
|| |||| ||||| |||||||| || || || |||||||| ||||| |||||||||||
Sbjct 3004 CTCATGGATAAAGGCTCACACATCATT-CAAATCGATGTTGACACAGACAAAGGTGGTCT 3062
Query 1379 CTCCATAAACCCTAACTTCTTCGTCGACTTTGG-GACCGAACCGGATGGTCCTTCGCTCG 1437
| ||||||||||| ||||||| || |||||||| || ||||| || |||||| | || |
Sbjct 3063 CACCATAAACCCTGACTTCTTTGTGGACTTTGGTGAT-GAACCAGACGGTCCTGCACTAG 3121
Query 1438 CTCACGAGATGAGATATCCGGGTGGCGACTGCACCTCAGATATCTGG 1484
| ||||||||||||||||| ||||| |||||||| || |||||||||
Sbjct 3122 CCCACGAGATGAGATATCCCGGTGGAGACTGCACTTCCGATATCTGG 3168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60753940775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5