BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G23805.1

Length=675
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg930431 jgi|Araly1|930431|scaffold_302888.1                        617    2e-176


> Ahg930431 jgi|Araly1|930431|scaffold_302888.1
Length=397

 Score =  617 bits (334),  Expect = 2e-176
 Identities = 371/388 (96%), Gaps = 5/388 (1%)
 Strand=Plus/Plus

Query  68   AAATTTTCACACACCGACATGTCTAGATCCTTAGCTCTCGTTTACTTATCCTTACTTTGT  127
            ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
Sbjct  3    AAATTTTCACACACCGACATGTCGAGATCCTTAGCTCTCGTTTACTTATCCATACTTT-T  61

Query  128  -CTTCAAACCCATCTCTCAATCTCCGTCACAGTTCCGATTCCGTCGGTAAACGGCGAAAT  186
             ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct  62   ACTTCAAACCCATCTCTCAATCTCCGTCACGGTTCCGATTCCGTCGGTGAACGGAGAAAT  121

Query  187  CGACGCAATGCTGAACCGGAACGGCGTAATCGGAGAGGAAGAAGGAGAGGAGATGATGCC  246
            ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct  122  CGACGCAATGCTGAACCGGAACGGCGTAATCGGGGAAGAAGAAGGAGAGGAGATGATGCC  181

Query  247  ATCGGAGATAAGTCGGAGAGTAATGATGATGCGGAAACAG-TACATAAGCTACGAAACTT  305
             ||||||||||| ||||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct  182  GTCGGAGATAAGCCGGAGAGTAATGATGATGCGGAAAC-GATACATAAGCTATGAAACTT  240

Query  306  TAAGGAGAGATATGGTTCCTTGTCAGAAACCAGGTGCTTCTTATTACGCTTGTCGCTCTG  365
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TAAGGAGAGACATGGTTCCTTGTCAGAAACCAGGTGCTTCTTATTACGCTTGTCGCTCTG  300

Query  366  GTCAGGCTAATGCTTACAACAGAGGATGTAGTGTCATTACTAGGTGTGCTAGAGACACTA  425
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  301  GTCAGGCTAATGCTTACAACAGAGGATGTAGCGTCATTACTAGGTGTGCTAGAGACACTA  360

Query  426  ACGACATCAAGACTTGAAAACATTGGGG  453
            ||||||||||||||||||| ||||||||
Sbjct  361  ACGACATCAAGACTTGAAA-CATTGGGG  387



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24779896050


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5