BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23810.1
Length=1849
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479893 jgi|Araly1|479893|fgenesh2_kg.3__2594__AT3G23810.1 2680 0.0
Ahg947029 jgi|Araly1|947029|scaffold_703258.1 1692 0.0
> Ahg479893 jgi|Araly1|479893|fgenesh2_kg.3__2594__AT3G23810.1
Length=1712
Score = 2680 bits (1451), Expect = 0.0
Identities = 1624/1708 (95%), Gaps = 10/1708 (1%)
Strand=Plus/Plus
Query 1 TCCTTCATCACACAGATCCACACATCAAGAAACTATTCAAAAATGGCTTTGCTTGTAGAG 60
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||
Sbjct 1 TCCTTCATCACACAGATCCACAGATCAAAAAACTATTCAAAAATGGCTTTGCTTGTTGAG 60
Query 61 AAAACCTCAAGTGGCCGTGAATACAAGGTCAAGGACATGTCCCAAGCCGACTTCGGCCGT 120
||||| |||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 61 AAAACATCAAGTGGCCGTGAATACAAGGTCAAAGACATGTCTCAGGCCGACTTCGGCCGG 120
Query 121 CTCGAAATCGAGCTAGCCGAAGTCGAAATGCCTGGACTTGTCTCTTG-CGTTACCGAATT 179
||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||
Sbjct 121 CTCGAAATCGAGCTAGCCGAAGTCGAAATGCCTGGACTTGTCTCTTGCCG-TACTGAATT 179
Query 180 CGGACCATCTCAGCCACTCAAAGGAGCAAGAATCACCGGTTCTCTCCACATGACGATCCA 239
|||||||||||||||||| |||||||||||||||||||| || |||||||||||||| ||
Sbjct 180 CGGACCATCTCAGCCACTAAAAGGAGCAAGAATCACCGGATCACTCCACATGACGATTCA 239
Query 240 AACCGCGGTTTTAATCGAAACCTTAACCGCTCTCGGCGCTGAAGTCAGATGGTGTTCTTG 299
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 240 AACCGCTGTTTTGATCGAAACGTTAACCGCTCTCGGCGCTGAAGTCAGATGGTGTTCTTG 299
Query 300 CAACATCTTCTCCACTCAAGACCACGCCGCGGCCGCTATTGCTCGTGATTCCGCCGCGGT 359
|||||||||||| |||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 300 CAACATCTTCTCAACTCAAGATCACGCCGCGGCAGCGATTGCTCGTGATTCCGCCGCGGT 359
Query 360 GTTCGCTTGGAAAGGTGAGACTCTTCAAGAATATTGGTGGTGTACAGAGAGAGCTCTTGA 419
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 GTTCGCTTGGAAAGGTGAGACTCTTCAAGAATATTGGTGGTGTACGGAGAGAGCTCTTGA 419
Query 420 CTGGGGTCCTGGAGGTGGTCCTGATCTCATCGTTGATGACGGTGGTGATGCTACACTGTT 479
||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 420 TTGGGGTCCTGGTGGTGGTCCTGATCTTATCGTTGATGACGGTGGTGATGCTACGCTGTT 479
Query 480 GATCCATGAAGGAGTTAAAGCTGAAGAGATCTTTGCCAAGAATGGTACGTTCCCTGACCC 539
||||||||| || |||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 480 GATCCATGAGGGTGTTAAAGCTGAAGAGATCTTTGAGAAGACTGGTACGTTCCCTGACCC 539
Query 540 GACCTCTACTGATAATCCCGAGTTTCAGATCGTCCTGTCTATTATCAAAGACGGTCTTCA 599
||| ||||| ||||||||||||||||||||||| || | ||||||| ||||||||||||
Sbjct 540 GACGTCTACGGATAATCCCGAGTTTCAGATCGTGTTGGCGATTATCAGAGACGGTCTTCA 599
Query 600 AGTTGATCCCAAGAAGTACCATAAGATGAAGGAGAGATTGGTTGGTGTCTCTGAGGAGAC 659
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 600 AGTTGATCCCAAGAAGTACCATAAGATGAAGGAGAGATTGGTTGGTGTTTCTGAAGAGAC 659
Query 660 TACTACTGGTGTTAAGAGGCTTTATCAGATGCAGGAGACTGGAGCTCTCTTGTTCCCTGC 719
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 660 TACCACTGGTGTTAAGAGGCTTTATCAGATGCAGGAGACTGGAACTCTCTTGTTCCCTGC 719
Query 720 CATTAACGTCAATGACTCTGTCACCAAGAGCAAGTTTGACAACTTGTACGGATGCCGACA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CATTAACGTCAATGACTCTGTCACCAAGAGCAAGTTTGACAACTTGTACGGATGCCGACA 779
Query 780 CTCGCTTCCCGATGGTCTCATGAGGGCTACTGATGTTATGATTGCTGGAAAGGTTGCTGT 839
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTCGCTACCTGATGGTCTCATGAGGGCTACTGATGTTATGATTGCTGGAAAGGTTGCTGT 839
Query 840 TATCTGTGGTTATGGTGATGTAGGAAAAGGTTGTGCTGCAGCAATGAAAACCGCGGGTGC 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TATCTGTGGTTATGGTGATGTAGGAAAAGGTTGTGCTGCAGCAATGAAAACCGCGGGTGC 899
Query 900 TCGTGTCATAGTGACTGAGATTGATCCAATCTGTGCTCTTCAGGCTCTTATGGAAGGTCT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TCGTGTCATAGTGACTGAGATTGATCCAATCTGTGCTCTTCAGGCTCTTATGGAAGGTCT 959
Query 960 TCAAGTTCTGACCCTTGAGGATGTTGTCTC-AGAAGCTGATATCTTCTGT-ACCACTACT 1017
||||||||| || |||||||||||| | || ||||||||||||||| ||| |||||||||
Sbjct 960 TCAAGTTCTAACTCTTGAGGATGTTCT-TCCAGAAGCTGATATCTT-TGTGACCACTACT 1017
Query 1018 GGTAACAAAGATATTATTATGGTTGATCACATGAGGAAGATGAAGAACAATGCCATTGTC 1077
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1018 GGTAACAAAGATATCATCATGGTTGACCACATGAGGAAGATGAAGAACAATGCCATTGTC 1077
Query 1078 TGTAACATTGGTCATTTTGACAATGAAATCGACATGCTTGGACTTGAGACCTACCCTGGT 1137
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1078 TGTAACATTGGTCATTTTGACAACGAAATCGACATGCTTGGACTTGAGACTTACCCTGGT 1137
Query 1138 GTGAAACGTATTACCATCAAGCCACAGACCGATAGGTGGGTGTTTCCTGATACCAACTCT 1197
||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 1138 GTGAAACGTATCACCATCAAGCCACAGACCGATAGGTGGGTGTTTCCAGACACCAAGTCT 1197
Query 1198 GGCATCATTGTTCTAGCTGAAGGTCGTTTGATGAACTTGGGATGCGCCACTGGACACCCG 1257
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1198 GGTATCATTGTTCTAGCTGAAGGTCGTTTGATGAACTTGGGATGCGCTACTGGACACCCG 1257
Query 1258 AGTTTCGTGATGTCGTGCTCATTCACCAACCAGGTGATTGCACAGCTTGAGCTCTGGAAC 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 AGTTTCGTGATGTCGTGCTCATTCACCAACCAGGTGATTGCACAGCTTGAGCTCTGGAAC 1317
Query 1318 GAGAAGTCAAGCGGGAAGTATGAGAAGAAGGTCTATGTTTTGCCTAAACACTTGGATGAG 1377
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1318 GAGAAGTCGAGCGGGAAGTATGAGAAGAAGGTGTATGTTTTGCCTAAACACTTGGATGAG 1377
Query 1378 AAGGTAGCTGCACTTCACTTAGGCAAGCTTGGTGCAAGACTCACCAAGCTTACCAAGGAC 1437
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1378 AAGGTAGCTGCACTTCACTTAGGTAAGCTCGGTGCAAGACTCACCAAGCTTACCAAGGAC 1437
Query 1438 CAATCTGACTATGTCAGCATACCCGTTGAAGGTCCTTACAAGCCTGTTCACTACAGGTAC 1497
||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||
Sbjct 1438 CAATCTGACTATGTCAGCATACCTATTGAAGGTCCCTACAAGCCTGTTCATTACAGGTAC 1497
Query 1498 TGAGAGGATAAAAGAGCCAAGCTTTGGTTCTTCGTTTGGTTTTCTGATTAAGCCGTTTAT 1557
||||| |||||||||| |||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1498 TGAGAAGATAAAAGAGGCAAGCTTTGGTTCTTCGTATGGTTTTATGATTAAGCCGTTTAT 1557
Query 1558 TGGCAATT-GTTTGAGTCGGATTGGGTCTGGTTTGGTCGGAG-AAATATGAGATATTGGT 1615
|||||||| ||||||||||| ||||||||||| |||||| || |||||||||||||||||
Sbjct 1558 TGGCAATTTGTTTGAGTCGGGTTGGGTCTGGTCTGGTCG-AGGAAATATGAGATATTGGT 1616
Query 1616 CTTCTGATGCGTGTGACCAAATATTGGTATGAATAAGGGGTTGTTTTTGATTTATGAGAG 1675
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 CCTCTGATGAGTGTGACCAAATATTGGTATGAATAAGGGGTTGTTTTTGATTTATGAGAG 1676
Query 1676 GCTGttttttt-GTTTTCTTCTTCTTCT 1702
||| ||||||| ||||||||||||||||
Sbjct 1677 GCTATTTTTTTTGTTTTCTTCTTCTTCT 1704
> Ahg947029 jgi|Araly1|947029|scaffold_703258.1
Length=1498
Score = 1692 bits (916), Expect = 0.0
Identities = 1292/1475 (88%), Gaps = 20/1475 (1%)
Strand=Plus/Plus
Query 39 AAAAATGGCTTTGCTTGTAGAGAAAACCTCAAGTGGCCGTGAATACAAGGTCAAGGACAT 98
||||||||| ||||| || ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 17 AAAAATGGCGTTGCTCGTCGAGAAGACCTCAAGTGGCCGTGAATACAAGGTCAAAGACAT 76
Query 99 GTCCCAAGCCGACTTCGGCCGTCTCGAAATCGAGCTAGCCGAAGTCGAAATGCCTGGACT 158
||| |||||||| ||||| ||||||||| ||||||| |||||||| || |||||||||||
Sbjct 77 GTCTCAAGCCGATTTCGGTCGTCTCGAACTCGAGCTCGCCGAAGTTGAGATGCCTGGACT 136
Query 159 TGTCTCTTG-CGTTACCGAATTCGGACCATCTCAGCCACTCAAAGGAGCAAGAATCACCG 217
| |||| || |||||| |||||||| ||||| ||| ||||||| || ||||||||||
Sbjct 137 CATGGCTTGTCG-TACCGAGTTCGGACCTTCTCAACCATTCAAAGGCGCTAGAATCACCG 195
Query 218 GTTCTCTCCACATGACGATCCAAACCGCGGTTTTAATCGAAACCTTAACCGCTCTCGGCG 277
| ||||| |||||||||||||||||||| || | ||||||||| |||| |||||||| |
Sbjct 196 GATCTCTTCACATGACGATCCAAACCGCCGTACTCATCGAAACCCTAACTGCTCTCGGTG 255
Query 278 CTGAAGTCAGATGGTGTTCTTGCAACATCTTCTCCACTCAAGACCACGCCGCGGCCGCTA 337
||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |
Sbjct 256 CTGAAGTCAGATGGTGTTCCTGCAACATCTTCTCTACTCAAGACCACGCCGCCGCCGCAA 315
Query 338 TTGCTCGTGATTCCGCCGCGGTGTTCGCTTGGAAAGGTGAGACTCTTCAAGAATATTGGT 397
| |||||||| |||||||| || ||||| |||||||||||||| ||||| || |||||||
Sbjct 316 TCGCTCGTGACTCCGCCGCTGTTTTCGCCTGGAAAGGTGAGACGCTTCAGGAGTATTGGT 375
Query 398 GGTGTACAGAGA-GAGCTCTTGACTGGGGTCCTGGAGGTGGTCCTGATCTCATCGTTGAT 456
||||||| || | | |||||||| |||||||| || |||||||||||||| || ||||||
Sbjct 376 GGTGTACGGA-ACGTGCTCTTGATTGGGGTCCAGGTGGTGGTCCTGATCTGATTGTTGAT 434
Query 457 GACGGTGGTGATGCTACACTGTTGATCCATGAAGGAGTTAAAGCTGAAGAGATCTTTGCC 516
|| |||||||||||||| || ||||||||||| || ||||||||||||||||| ||||
Sbjct 435 GATGGTGGTGATGCTACGCTTTTGATCCATGAGGGTGTTAAAGCTGAAGAGATTTTTGAG 494
Query 517 AAGAATGGT-ACGTTCCCTGACCCGACCTCTACTGATAATCCC-GAGTTTCAGATCGTCC 574
|||| |||| | ||| ||||| || || ||||||||||| ||| ||||||||||||||
Sbjct 495 AAGACTGGTCAAGTT-CCTGATCCTACTTCTACTGATAA-CCCTGAGTTTCAGATCGTGT 552
Query 575 TGTCTATTATCAAAGACGGTCTTCAAGTTGATCCCAAGAAGTACCATAAGATGAAGGAGA 634
||||||||||||| || |||||||| |||||||| |||||||||||||||||||||||||
Sbjct 553 TGTCTATTATCAAGGAAGGTCTTCAGGTTGATCCTAAGAAGTACCATAAGATGAAGGAGA 612
Query 635 GA-TTGGTTGGTGTCTCTGAGGAGACTACTACTGGTGTTAAGAGGCTTTATCAGATGCAG 693
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 613 GACTT-GTTGGTGTCTCTGAGGAAACTACTACTGGTGTTAAGAGGCTTTATCAGATGCAG 671
Query 694 GAGACTGGAGCTCTCTTGTTCCCTGCCATTAACGTCAATGACTCTGTCACCAAGAGCAAG 753
|| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 GAAAATGGAACTCTCTTGTTCCCTGCCATTAACGTCAATGACTCTGTCACCAAGAGCAAG 731
Query 754 TTTGACAACTTGTACGGATGCCGACACTCGCTTCCCGATGGTCTCATGAGGGCTACTGAT 813
|| ||||| ||||| || ||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct 732 TTCGACAATTTGTATGGTTGCCGTCACTCACTTCCTGATGGTCTCATGAGGGCCACTGAT 791
Query 814 GTTATGATTGCTGGAAAGGTTGCTGTTATCTGTGGTTATGGTGATGTAGGAAAAGGTTGT 873
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 792 GTTATGATCGCTGGAAAGGTTGCTGTTATCTGTGGATATGGTGATGTTGGAAAGGGTTGT 851
Query 874 GCTGCAGCAATGAAAACCGCGGGTGCTCGTGTCATAGTGACTGAGATTGATCCAATCTGT 933
||||| || ||||| || || |||||| | ||||| ||||||||||||||||| ||||||
Sbjct 852 GCTGCTGCCATGAAGACTGCTGGTGCTAGAGTCATTGTGACTGAGATTGATCCCATCTGT 911
Query 934 GCTCTTCAGGCTCTT-ATGGAAGGTCTTCAAGTTCTGACCCTTGAGGATGTTGTCTCAGA 992
|| ||||| ||| || |||||||| ||||| ||||| |||||||||||||||||||| ||
Sbjct 912 GCCCTTCAAGCT-TTGATGGAAGGACTTCAGGTTCTTACCCTTGAGGATGTTGTCTCTGA 970
Query 993 AGCTGATATCTTCTGT-ACCACTACTGGTAACAAAGATATTATTATGGTTGATCACATGA 1051
|||||||||||| ||| ||||||||||||||||||||||| || |||||||| |||||||
Sbjct 971 AGCTGATATCTT-TGTGACCACTACTGGTAACAAAGATATCATCATGGTTGACCACATGA 1029
Query 1052 GGAAGATGAAGAACAATGCCATTGTCTGTAACATTGGTCATTTTGACAATGAAATCGACA 1111
||||||||||||||||||| ||||| || ||||||||||| |||||||| || |||||||
Sbjct 1030 GGAAGATGAAGAACAATGCTATTGTGTGCAACATTGGTCACTTTGACAACGAGATCGACA 1089
Query 1112 TGCTTGGACTTGAGACCTACCCTGGTGTGAAACGTATTACCATCAAGCCACAGACCGATA 1171
|||| ||| ||||||| ||||||||||| || ||||| ||||||||||| ||||| || |
Sbjct 1090 TGCTCGGATTTGAGACTTACCCTGGTGTTAAGCGTATCACCATCAAGCCCCAGACTGACA 1149
Query 1172 GGTGGGTGTTTCCTGATACCAACTCTGGCATCATTGTTCTAG-CTGAAGGTCGTTTGATG 1230
|||||||||| || || || || | || |||||||| || | |||| |||||| | |||
Sbjct 1150 GGTGGGTGTTCCCAGAGACAAAGACCGGAATCATTGT-CTTGGCTGAGGGTCGTCTCATG 1208
Query 1231 AACTTGGGATGCGCCACTGGACACCCGAGTTTCGTGATGTCGTGCTCATTCACCAACCAG 1290
|||||||| || |||||||| ||||| |||||||||||||| ||||| ||||||||||||
Sbjct 1209 AACTTGGGTTGTGCCACTGGTCACCCAAGTTTCGTGATGTCTTGCTCTTTCACCAACCAG 1268
Query 1291 GTGATTGCACAGCTTGAGCTCTGGAACGAGAAGTCAAGCGGGAAGTATGAGAAGAAGGTC 1350
|||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1269 GTGATTGCCCAGCTTGAGCTCTGGAACGAGAAGTCAAGCGGTAAGTACGAGAAGAAGGTG 1328
Query 1351 TATGTT-TTGCCTAAACACTTGGATGAGAAGGTAGCTGCACTTCACTTAGGCAAGCTTGG 1409
|| ||| || || || || |||||||||||||| || ||||||||||| |||||||||||
Sbjct 1329 TACGTTCTTCCC-AAGCATTTGGATGAGAAGGTTGCAGCACTTCACTTGGGCAAGCTTGG 1387
Query 1410 TGCAAGACTCACCAAGCT-TACCAAGGACCAATCTGACTATGTCAGCATACCCGTTGAAG 1468
|| || || || ||||| | | ||||||||||||||||| ||||||| || |||| |
Sbjct 1388 AGCCAGGCTTACTAAGCTGT-CAAAGGACCAATCTGACTACATCAGCATTCCAATTGAGG 1446
Query 1469 GTCCTTACAAGCCTGTTCACTACAGGTACTGAGAG 1503
| || ||||||||| |||||||||||||||||||
Sbjct 1447 GACCATACAAGCCTCCTCACTACAGGTACTGAGAG 1481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69438516635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5