BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23820.1
Length=2019
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930439 jgi|Araly1|930439|scaffold_302896.1 2348 0.0
> Ahg930439 jgi|Araly1|930439|scaffold_302896.1
Length=1428
Score = 2348 bits (1271), Expect = 0.0
Identities = 1369/1416 (97%), Gaps = 7/1416 (0%)
Strand=Plus/Plus
Query 183 TTATATCAAATAGACGAAAATGCCCCTGTCGGCGACGGCGGATACAAGCAAGACGGTGAA 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 TTATATCAAATAGACGAAAATGCCCCTGTCGGCGACGGCGGATACAAGCAAGACGGTGAA 63
Query 243 GCTGGAGAGGTACAATAGCTACCTCCGGAAGATTCACAGCACCAAAGTTCTCAACGCTTC 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 GCTGGAGAGGTACAATAGCTACCTCCGGAAGATTCACAGCACCAAAGTTCTCAACGCTTC 123
Query 303 TTCTAAAGTTCTTTTCCGAGCAACGCTTCTCGTAGCTCTTGTCCTCGTCCTCATCTTCGC 362
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 124 TTCTAAAGTTCTTTTCCGAGCAACGCTCCTCGTAGCTCTTGTCCTCGTCCTCCTCTTCGC 183
Query 363 CATCAACTACCCTCCACTCTCCGATAGCCGCGCCGCCGCAGCACACCACCTCCACCGTCG 422
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 184 TATCAACTACCCTCCACTCTCCGACAGCCGCGCCGCCGCGGCACACCACCTCCACCGTCG 243
Query 423 TAGCTTCTTATCCACCGGActcttctcctcctc--c-tcttcttcctcctctATCGGTGG 479
||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||
Sbjct 244 TAGCTTCTTATCCACCGGACTCTTCTCCTCCTCTTCCTCTTCCTCCTCCTCTATCGGTGG 303
Query 480 AGCCGCGTGGGAAAAGCGCGTTAGACAATCCTCAACAGCCAAACGACCACACGGTCTCTC 539
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 304 AGCCGCGTGGGAAAAGCGCGTCAGACAATCCTCAACAGCCAAACGACCACACGGTCTCTC 363
Query 540 CGTCCTAGTCACCGGAGCTGCCGGATTCGTCGGATCCCACTGCTCACTTGCGCTGCGAAA 599
|||||||||||||||||||||||| || ||||||||||||||||||||||| || |||||
Sbjct 364 CGTCCTAGTCACCGGAGCTGCCGGCTTTGTCGGATCCCACTGCTCACTTGCTCTACGAAA 423
Query 600 ACGTGGCGATGGAGTCTTAGGATTCGACAACTTCAACGATTACTATGACCCATCACTCAA 659
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 424 ACGTGGCGATGGAGTCTTAGGATTCGACAACTTCAACGATTACTACGACCCATCACTCAA 483
Query 660 AAGAGCAAGACAAGAGCTCTTGGAGAAACAACAAGTGTTCATCGTCGAAGGTGATCTCAA 719
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 484 AAGAGCAAGACAAGAGCTCTTAGAGAAGCAACAAGTGTTCATCGTCGAAGGTGATCTCAA 543
Query 720 CGATGGACCACTCTTACGTAAACTCTTCGACGTTGTCCCTTTCACTCACATCCTTCACTT 779
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 544 CGATGGACCACTCTTACGTAAACTCTTCGATGTTGTTCCTTTCACTCACATCCTTCACTT 603
Query 780 AGCCGCTCAAGCCGGAGTACGTTACGCTATGAAAAACCCTCAATCTTACATCGCCTCCAA 839
||||||||||||||||||||| |||||||||||||||||||| || |||||||| |||||
Sbjct 604 AGCCGCTCAAGCCGGAGTACGCTACGCTATGAAAAACCCTCAGTCCTACATCGCATCCAA 663
Query 840 CATCGCCGGATTCGTTAACCTTCTTGAAGTGGCTAAAGCAGCTAATCCACAACCTGCGAT 899
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 664 CATCGCCGGATTCGTTAACCTCCTTGAAGTGGCTAAAGCAGCTAATCCTCAACCTGCGAT 723
Query 900 TGTTTGGGCTTCCTCTAGCTCTGTTTACGGTCTCAACACTGAGAATCCATTCTCTGAAGA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 TGTTTGGGCTTCCTCTAGCTCTGTTTACGGTCTCAACACTGAGAATCCATTCTCTGAAGA 783
Query 960 ACACCGAACAGACCAACCAGCGAGTCTTTACGCAGCAACCAAGAAAGCTGGTGAAGAGAT 1019
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 784 ACACAGAACAGACCAACCAGCAAGTCTTTACGCAGCAACCAAGAAAGCTGGTGAAGAGAT 843
Query 1020 CGCACATACTTACAACCACATCTACGGTCTCTCCTTAACCGGACTCCGGTTCTTT-ACGG 1078
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||
Sbjct 844 CGCACATACTTACAACCACATCTACGGTCTCTCTTTAACCGGACTCCGGTT-TTTCACGG 902
Query 1079 TTTACGGTCCATGGGGAAGACCAGACATGGCTTACTTCTTCTTCACTAAAGACATCCTCC 1138
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 TTTACGGTCCTTGGGGAAGACCAGACATGGCTTACTTCTTCTTCACTAAAGACATCCTCC 962
Query 1139 ACGGTAAATCAATCGACATTTACAGAACTCAGGACAATCAAGAAGTGGCGCGTGACTTCA 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 ACGGTAAATCAATCGACATTTACAGAACTCAGGACAATCAAGAAGTGGCGCGTGACTTCA 1022
Query 1199 CCTACATCGATGACATCGTTAAAGGTTGTGTCGGTGCGTTAGACACGGCTGAGAAAAGCA 1258
| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1023 CATACATCGACGACATCGTTAAAGGTTGTGTCGGTGCGTTAGACACGGCGGAGAAAAGTA 1082
Query 1259 CCGGAAGCGGCGGAAAGAAGCGAGGACAAGCTCAGCTACGTGTTTACAATCTAGGAAACA 1318
|||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1083 CCGGAAGCGGTGGAAAGAAGCGAGGACAAGCTCAACTACGTGTTTACAATCTTGGAAACA 1142
Query 1319 CGTCCCCGGTTCCGGTTGGGAGATTGGTCTCGATCTTGGAAGGATTGTTAGGGACAAAAG 1378
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 CGTCTCCGGTTCCGGTTGGGAGATTGGTCTCGATCTTGGAAGGATTGTTAGGGACAAAAG 1202
Query 1379 CTAAGAAGCATCTTATCAAAATGCCAAGAAACGGTGACGTGCCTTACACGCATGCTAATG 1438
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 CAAAGAAACATCTTATCAAAATGCCAAGAAACGGTGACGTGCCTTACACGCATGCTAATG 1262
Query 1439 TGAGTTTAGCGTATAAAGATTTCGGGTACAAACCGACGACGGATCTCGCGGCGGGGCTGA 1498
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1263 TGAGTTTAGCGTATAAAGATTTCGGATACAAACCCACGACGGATCTCGCGGCGGGGCTGA 1322
Query 1499 GGAAGTTCGTCAAGTGGTACGTTGGTTATTATGGGATTCAGCCGAGGGTAAAAAAGGAAA 1558
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1323 GGAAGTTCGTCAAGTGGTACGTTGGTTATTATGGGATACAGCCGAGGGTAAAAAAGGAAA 1382
Query 1559 -CTTCTCACGCCGAAGATTCCGCTTAATAATTTTCT 1593
||| ||||||||||| |||||||||||||||||||
Sbjct 1383 ACTT-TCACGCCGAAGGTTCCGCTTAATAATTTTCT 1417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75913858285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5