BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G23830.1

Length=792
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg342532 jgi|Araly1|342532|fgenesh1_pg.C_scaffold_3002295           302    3e-81


> Ahg342532 jgi|Araly1|342532|fgenesh1_pg.C_scaffold_3002295
Length=321

 Score =  302 bits (163),  Expect = 3e-81
 Identities = 177/184 (96%), Gaps = 0/184 (0%)
 Strand=Plus/Plus

Query  103  TTCTGCAACAAACTTAGCGGTATCTTGAGACAAGGGGTTTCTCAGAGCTCAAATGGTCCA  162
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct  7    TTCTGCAACAAACTTAGCGGTATTTTGAGACAAGGGGTTTCTCAGAGCTCAAATGTTCCA  66

Query  163  GTTACATCTATGCTTGGCTCTCTTCGTTACATGTCCTCTAAGCTTTTTGTTGGTGGTCTC  222
            || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  67   GTGACATCTATGCTTGGCTCTCTTCGTTACATGTCCACTAAGCTTTTTGTTGGTGGTCTC  126

Query  223  TCTTGGGGAACTGATGACAGCTCCTTAAAGCAAGCTTTCACTAGCTTTGGTGAAGTCACA  282
            ||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||
Sbjct  127  TCTTGGGGAACTGATGACAGCTCCTTAAAGCAAGCTTTCTCTAACTTTGGCGAAGTCACA  186

Query  283  GAAG  286
            ||||
Sbjct  187  GAAG  190



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29240277339


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5