BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23840.1
Length=1445
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497463 jgi|Araly1|497463|fgenesh2_kg.520__1__AT3G23840.1 2023 0.0
Ahg479896 jgi|Araly1|479896|fgenesh2_kg.3__2597__AT3G23840.1 1971 0.0
> Ahg497463 jgi|Araly1|497463|fgenesh2_kg.520__1__AT3G23840.1
Length=1351
Score = 2023 bits (1095), Expect = 0.0
Identities = 1267/1352 (94%), Gaps = 3/1352 (0%)
Strand=Plus/Plus
Query 1 ACTCAGAATCATCTTTGTCAATATTTCTCTACCATCTTTTGTCTCATAGCCATGGGTCTA 60
||||||||||||||||| |||||||||||| ||| ||||||||||||| ||||||||| |
Sbjct 1 ACTCAGAATCATCTTTGCCAATATTTCTCTTCCACCTTTTGTCTCATAACCATGGGTCGA 60
Query 61 GTTCAAGAAGAGGGAAGCGGTCCTGTTCATGGCTTTCGGTTATCAACCGTGAGTGCGTCC 120
||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||||||
Sbjct 61 GTTCAAGAAGAGGGAAGCGGTCCAGTTCATGGCTTCCGATTATCGACCGTGAGTGCGTCC 120
Query 121 CTGCCGTCAGAGACAGGTACGACCCACGAGCCCACCGGTTTAGACCTCGCCATGAAGCTC 180
| || |||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 CAACCCTCAGAGACCGGTACGACCCACGAACCCACCGGTTTAGACCTCGCCATGAAGCTT 180
Query 181 CACTACCTAAAGGCGGTTTACATTTACTCGGCCGGGACAGCACGTGACTTGACTGTGATG 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 181 CACTACCTAAAGGCGGTTTACATTTACTCGGCCGAGACAGCACGTGACTTGACCGTGATG 240
Query 241 GACGTGAAGGCGCCTTTGTTTTCAGTGTTCTACCAGATCCCTTGCATCATTGGCAGGTTC 300
|||||||| |||||||||||||||||||| |||||||||| || |||||||||||||||
Sbjct 241 CACGTGAAGACGCCTTTGTTTTCAGTGTTCGACCAGATCCCATGTATCATTGGCAGGTTC 300
Query 301 AGGCGACATGAATCGGGACGTCCGTACCTAAAGTGCAACGACTGTGGCACACGTTTCGTG 360
|||||||| || ||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 301 AGGCGACACGATTCGGGACGTCCGTACATAAAGTGTAACGACTGTGGCACACGTTTCGTG 360
Query 361 GAGAGTCATTGTGATCTCACTGTGGAGGAGTGGCTCCGTGTACCGGACCGGTCCGTTGAT 420
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 GAAAGTCATTGTGATCTCACTGTGGAGGAGTGGCTCCATGTACCGGACCGGTCCGTTGAT 420
Query 421 GAGTCTTTGGTTTACCATCAACCAGTTGGACCAGATTTGGCATTCTCTCCTTTGCTCTAT 480
||| || |||||||||||||| |||||||||| || || |||||||||||||||||||||
Sbjct 421 GAGGCTCTGGTTTACCATCAATCAGTTGGACCGGAATTAGCATTCTCTCCTTTGCTCTAT 480
Query 481 ATTCAGATGACCCGGTTTAGCTGCGGTGGATTAGCTTTGGGCTTAAGCTGGGCTCATATC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 481 ATTCAGATGACCCGGTTTAGCTGCGGTGGATTAGCTTTGGGCTTAAGCTGGGCTCATGTC 540
Query 541 ATGGGAGATCCATTCTCTCTTTCTCATTTCTTCAACTTATGGGCTCAAGCCTTTGCTGGT 600
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATGGGAGATCCATTCTTTCTTTCTCATTTCTTCAACTTATGGGCTCAAGCCTTTGCTGGT 600
Query 601 GGGAAGATCTACTGCCCCAAAACCTCTG-TCACAGAGAGAGACTTTCAAAACCCGACCTC 659
| ||||||||||| |||||||||||||| | ||||| |||| || ||||||||||| |||
Sbjct 601 GAGAAGATCTACTCCCCCAAAACCTCTGAT-ACAGAAAGAGTCTGTCAAAACCCGAACTC 659
Query 660 AACATTCAAAAAACCGGATTCAGTCAAACAGGTTGACCTGGTTGGAGATCTCTGGGTCGC 719
||| |||||||||| ||||| |||||| |||||||| |||||||||||||||||||||
Sbjct 660 AACGGTCAAAAAACCCAATTCAATCAAACGGGTTGACCCGGTTGGAGATCTCTGGGTCGC 719
Query 720 TCCGAATAACAGCAAAATGACAACATTCTCCTTCAATTTAACGGTTAACGATTTAAAAAC 779
|||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| |
Sbjct 720 TCCGAATAACAGCAAAATGACAACATTCTCCTTCAATTCAACGGTTAACGATCTCAAATC 779
Query 780 ACATTTTCCGGTGAACGGAGACGGCGAATTCGAGATTCTCACTGGAATCATATGGAAATG 839
||||||||||| ||||||||||| ||||||| |||||||| ||||||| |||||||||||
Sbjct 780 ACATTTTCCGGCGAACGGAGACGACGAATTCAAGATTCTCGCTGGAATTATATGGAAATG 839
Query 840 TGTTGCGACGGTGAGGGGAGAATCAGCTCCGGTGACGATTACGGTTATCAGATCGGATCC 899
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 840 TGTTGCGACGGCGAGGGGAGAATCAGCTCCGGTGACGATTACGGTTATCAGATTGGATCC 899
Query 900 GAAGAAGTTGAAGCCTAGAGCGGTGAGAAATGGTCAGATGATAAGTTCCATTCACGTCGA 959
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 900 GAAGGAGTTGAAGCCTAGAGCGGTGAGAAATGGTCAGATGATAAGTTCCGTTCACGTCGA 959
Query 960 TTTCTCGGTGGCGGAGGCGAGTTTGGAGGAGATTGTGAAATCGATCGGTGAAGCGAAAGA 1019
|||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| |||
Sbjct 960 TTTCTCGGTGGCGGAGGCGAGTCTGGAGGAGATTGTGAAAGCAATCGGTGAAGCGAGAGA 1019
Query 1020 TGAGAGGGTTGTGATCGATGAGATTGTTGATGATGTTTCGGATTTTATTGTTTACGGAGC 1079
||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TGAGAGGTTTGGGATCGATGATATTGTTGATGATGTTTCGGATTTTATTGTTTACGGAGC 1079
Query 1080 GAATTTAACGTTTGTGGATATGAGTGAAGTTGATTTTTATGAGGCGAAAGTTATGGGGAA 1139
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GAATTTGACGTTTGTGGATATGAGTGAAGTTGATTTTTATGAGGCGAAAGTTATGGGGAA 1139
Query 1140 ATCGCCGGAATCGGTTTATTGTAATGTTCAGGGGATTGGGGACGACGGAGCAGTGGTGGT 1199
|| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1140 GTCACCGGAATCGGTTTATTGTAATGTTCAGGGGATTGGTGACGACGGAGCTGTGGTGGT 1199
Query 1200 TTTACCGGGGGTTGTGGAGGAGGAGAGGGTTGTGACGGTGACATTACCGGTGGATGAGAT 1259
||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||
Sbjct 1200 TTTACCGGGGGTTGTGGAGGAGGAGAGAGTTGTGACGGTGACGTTACCGGAGGATGAGAT 1259
Query 1260 TGAGAAGGTGAAATGGGAAATGAAGAAATGTGGTTTGATCACGCCGTTAGTTTAACGGTG 1319
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1260 TGAGAAGGTGAAATGGGAAATGAAGAATTGTGGTTTGATCACGCCGTTAGTTTAACGGAG 1319
Query 1320 AAT-GAAGAAATCATTTTATGCGGTTATCGTT 1350
|| |||| ||| |||||||||||||||||||
Sbjct 1320 GATTGAAGGAATTATTTTATGCGGTTATCGTT 1351
> Ahg479896 jgi|Araly1|479896|fgenesh2_kg.3__2597__AT3G23840.1
Length=1310
Score = 1971 bits (1067), Expect = 0.0
Identities = 1231/1312 (94%), Gaps = 4/1312 (0%)
Strand=Plus/Plus
Query 8 ATCATCTTTGTCAATATTTCTCTACCATCTTTTGTCTCATAGCCATGGGTCTAGTTCAAG 67
|||||||||| |||||||||||| | ||||||||||||||| ||||||||| ||||||||
Sbjct 1 ATCATCTTTGCCAATATTTCTCTTCGATCTTTTGTCTCATAACCATGGGTCGAGTTCAAG 60
Query 68 AAGAGGGAAGCGGTCCTGTTCATGGCTTTCGGTTATCAACCGTGAGTGCGTCCCTGCCGT 127
|||||||||||||||| ||||||||||| || ||||| || ||||||||||| | || |
Sbjct 61 AAGAGGGAAGCGGTCCGGTTCATGGCTTCCGCTTATCGACTGTGAGTGCGTCTCAACCCT 120
Query 128 CAGAGACAGGTACGACCCACGAGCCCACCGGTTTAGACCTCGCCATGAAGCTCCACTACC 187
||||||| | |||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 121 CAGAGACCGATACGACCCACGAACCCACCGGTTTAGACCTCGCCATGAAGCTTCACTACC 180
Query 188 TAAAGGCGGTTTACATTTACTCGGCCGGGACAGCACGTGACTTGACTGTGATGGACGTGA 247
| ||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||
Sbjct 181 TTAAGGCGGTTTACATTTACTCGGCCGAGACAGCACGTGACTTGACCGTGATGCACGTGA 240
Query 248 AGGCGCCTTTGTTTTCAGTGTTCTACCAGATCCCTTGCATCATTGGCAGGTTCAGGCGAC 307
|| |||||||||||||||||||| |||||||||| || ||||||||||||||||||||||
Sbjct 241 AGACGCCTTTGTTTTCAGTGTTCGACCAGATCCCATGTATCATTGGCAGGTTCAGGCGAC 300
Query 308 ATGAATCGGGACGTCCGTACCTAAAGTGCAACGACTGTGGCACACGTTTCGTGGAGAGTC 367
| || ||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||
Sbjct 301 ACGATTCGGGACGTCCGTACATAAAGTGTAACGACTGTGGCACACGTTTCGTGGAAAGTC 360
Query 368 ATTGTGATCTCACTGTGGAGGAGTGGCTCCGTGTACCGGACCGGTCCGTTGATGAGTCTT 427
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 361 ATTGTGATCTCACTGTGGAGGAGTGGCTCCATGTACCGGACCGGTCCGTTGATGAGGCTC 420
Query 428 TGGTTTACCATCAACCAGTTGGACCAGATTTGGCATTCTCTCCTTTGCTCTATATTCAGA 487
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 421 TGGTTTACCATCAACCAGTTGGACCAGAATTGGCATTCTCTCCTTTGCTCTATATTCAGA 480
Query 488 TGACCCGGTTTAGCTGCGGTGGATTAGCTTTGGGCTTAAGCTGGGCTCATATCATGGGAG 547
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 TGACCCGGTTTAGCTGCGGTGGATTAGCTTTGGGCTTAAGCTGGGCTCATGCCATGGGAG 540
Query 548 ATCCATTCTCTCTTTCTCATTTCTTCAACTTATGGGCTCAAGCCTTTGCTGGTGGGAAGA 607
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 541 ATCCATTCTCTCTTTCTCATTTCTTCAACTTATGGGCTCAAGCCTTTGCTGGTGAGAAGA 600
Query 608 TCTACTGCCCCAAAACCTCTG-TCACAGAGAGAGACTTTCAAAACCCGACCTCAACATTC 666
|||||| |||||||||||||| | ||||| |||| || ||||||||||| |||||| ||
Sbjct 601 TCTACTCCCCCAAAACCTCTGAT-ACAGAAAGAGTCTGTCAAAACCCGAACTCAACGGTC 659
Query 667 AAAAAACCGGATTCAGTCAAACAGGTTGACCTGGTTGGAGATCTCTGGGTCGCTCCGAAT 726
|||||||| ||||| |||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 660 AAAAAACCCAATTCAATCAAACGGGTTGACCCGGTTGGAGATCTCTGGGTCGCTCCGAAT 719
Query 727 AACAGCAAAATGACAACATTCTCCTTCAATTTAACGGTTAACGATTTAAAAACACATTTT 786
||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct 720 AACAGCAAAATGACAACATTCTCCTTCAATTTAACGGTTAACGATCTCAAATCACATTTT 779
Query 787 CCGGTGAACGGAGACGGCGAATTCGAGATTCTCACTGGAATCATATGGAAATGTGTTGCG 846
|||| ||||||||||| ||||||| |||||||| ||||||| ||||||||||||||||||
Sbjct 780 CCGGCGAACGGAGACGACGAATTCAAGATTCTCGCTGGAATTATATGGAAATGTGTTGCG 839
Query 847 ACGGTGAGGGGAGAATCAGCTCCGGTGACGATTACGGTTATCAGATCGGATCCGAAGAAG 906
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 840 ACGGCGAGGGGAGAATCAGCTCCGGTGACGATTACGGTTATCAGATTGGATCCGAAGGAG 899
Query 907 TTGAAGCCTAGAGCGGTGAGAAATGGTCAGATGATAAGTTCCATTCACGTCGATTTCTCG 966
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 900 TTGAAGCCTAGAGCGGTGAGAAATGGTCAGATGATAAGTTCCGTTCACGTCGATTTCTCG 959
Query 967 GTGGCGGAGGCGAGTTTGGAGGAGATTGTGAAATCGATCGGTGAAGCGAAAGATGAGAGG 1026
||||||||||||||| ||||||||||||||||| | ||||||||||||| ||||||||||
Sbjct 960 GTGGCGGAGGCGAGTCTGGAGGAGATTGTGAAAGCAATCGGTGAAGCGAGAGATGAGAGG 1019
Query 1027 GTTGTGATCGATGAGATTGTTGATGATGTTTCGGATTTTATTGTTTACGGAGCGAATTTA 1086
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TTTGGGATCGATGATATTGTTGATGATGTTTCGGATTTTATTGTTTACGGAGCGAATTTG 1079
Query 1087 ACGTTTGTGGATATGAGTGAAGTTGATTTTTATGAGGCGAAAGTTATGGGGAAA-TCGCC 1145
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||
Sbjct 1080 ACGTTTGTGGATATGAGTGAAGTTGATTTTTATGAGGCGAAAGTTATGGG-AAAGTCACC 1138
Query 1146 GGAATCGGTTTATTGTAATGTTCAGGGGATTGGGGACGACGGAGCAGTGGTGGTTTTACC 1205
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1139 GGAATCGGTTTATTGTAATGTTCAGGGGATTGGTGACGACGGAGCTGTGGTGGTTTTACC 1198
Query 1206 GGGGGTTGTGGAGGAGGAGAGGGTTGTGACGGTGACATTACCGGTGGATGAGATTGAGAA 1265
||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||
Sbjct 1199 GGGGGTTGTGGAGGAGGAGAGAGTTGTGACGGTGACGTTACCGGAGGATGAGATTGAGAA 1258
Query 1266 GGTGAAATGGGAAATGAAGAAATGTGGTTTGATCACGCCGTTAGTTTAACGG 1317
||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1259 GGTGAAATGGGAAATGAAGAAGTGTGGTTTGATCACGCCGTTAGTTTAACGG 1310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54050057655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5