BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23870.1
Length=1553
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930442 jgi|Araly1|930442|scaffold_302899.1 1679 0.0
Ahg493534 jgi|Araly1|493534|fgenesh2_kg.7__2967__AT4G13800.1 939 0.0
> Ahg930442 jgi|Araly1|930442|scaffold_302899.1
Length=1055
Score = 1679 bits (909), Expect = 0.0
Identities = 1011/1059 (95%), Gaps = 12/1059 (1%)
Strand=Plus/Plus
Query 374 AAC-AATTATATATAGCTAAGATGGATCAAATGTCACCTGATAACATAAATGGAGTCATT 432
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AACAAATTATATATAGCTAAGATGGATCAAATGTCACCTGATAACATAAATGGAGTCATT 60
Query 433 TTAGCAGTGTCTTCAAGTATCTTTATTGGTTCTAGCTTCATCATCAAGAAAAAAGGTCTC 492
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTAGCAGTGTCTTCAAGTATTTTTATTGGTTCTAGCTTCATCATCAAGAAAAAAGGTCTC 120
Query 493 AAGAAAGCCGGTGCAAGCGGTGTCCGAGCAGGTGAAGGAGGGTATGGATACTTGAAGGAG 552
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 121 AAGAAAGCCGGTGCAAGCGGTGTCCGAGCAGGTGAAGGAGGGTATGGATATTTAAAGGAA 180
Query 553 CCATGGTGGTGGGCTGGAATGATAACAATGATTGTTGGGGAAGTAGCTAATTTTGCAGCC 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCATGGTGGTGGGCTGGAATGATAACAATGATTGTTGGGGAAGTAGCTAATTTTGCAGCC 240
Query 613 TATGCATTTGCACCGGCTATT-TTGGTAACACCTTTGGGAGCTTTAAGTATTATATTCAG 671
||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||
Sbjct 241 TATGCATTTGCACCGGCTATTCTTG-TAACACCTTTGGGAGCTTTAAGTATCATATTCAG 299
Query 672 CGCAGTGCTCGCGCATTTTATTTTGAAAGAGAAATTGCATATGTTTGGGATACTTGGTTG 731
||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||
Sbjct 300 CGCAGTGCTCGCGCATTTTATTTTGCAAGAGAAACTGCATATGTTTGGGATACTCGGTTG 359
Query 732 CATTCTCTGTGTTGTTGGGTCTACAACTATAGTCTTACACGCACCACATGAACAGAAAAT 791
|||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 360 CATTCTTTGTGTTGTTGGGTCTACAACTATAGTCTTACACGCCCCGCATGAACAGAAAAT 419
Query 792 AGAATCAGTCAAGCAAATATGGCAGCTTGCTATTGAACCAGGTTTCCTTGTGTATTCTGC 851
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 TGAATCAGTCAAGCAAATATGGCAGCTTGCTATCGAACCAGGTTTCCTTGTGTATTCTGC 479
Query 852 TGTGATTGTGATTGTGGTGGCTATACTGATCTTCTACTATGAACCGCGCTACGGGAAGAC 911
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 TGTGATTGTGGTTGTGGTGGCTATACTGATCTTCTACTATGAACCGCGTTACGGGAAGAC 539
Query 912 TCATATGATCGTATATGTCGGAATCTGCTCCTTAATGGGTTCTCTTACTGTTATGAGTGT 971
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 TCATATGATAGTATATGTCGGAATCTGTTCCTTAATGGGTTCTCTTACTGTTATGAGTGT 599
Query 972 CAAAGCTGTGGCGATTGCGATTAAACTGACATTTTCAGGGACGAATCAGTTTAAATACTT 1031
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 600 CAAAGCTGTGGCGATTGCGATTAAACTGACATTTTCGGGGACGAATCAGTTCAAATACTT 659
Query 1032 CAACACTTGGATTTTCATTTTAGTAGTTGCAACTTGTTGCATTTTGCAGATCAACTACTT 1091
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 660 CAACACTTGGATTTTCATTTTAGTAGTTGCAACTTGTTGCCTTTTGCAAATCAACTACTT 719
Query 1092 GAACAAGGCATTGGATACATTCAACACAGCGGTTATTTCTCCGGTTTACTACGTTATGTT 1151
||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 720 GAACAAGGCGTTGGATACATTCAATACAGCTGTTATTTCTCCGGTTTACTACGTTATGTT 779
Query 1152 CACAACATTCACAATCATAGCTAGTATGATCATGTTCAAGGATTGGGCTTCTCAGAGTGG 1211
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CACAACTTTCACAATCATAGCTAGTATGATCATGTTCAAGGATTGGGCTTCTCAGAGTGG 839
Query 1212 ATTAAAGATTGCAACAGAGTTGTGTGGTTTTGTGACGATTTTATCAGGAACTTTTCTGCT 1271
||| |||||||||||| |||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 840 ATTGAAGATTGCAACACAGTTGTGTGGGTTTGTGACGATTTTGTCAGGAACATTTCTGCT 899
Query 1272 TCACAAGACCAAAGATATGGGAAACAG--T-GC---AAGTGGTCGTGGTTCTATCTCAAT 1325
||||||||||||||||||||||||||| | | |||||||||||||||| |||||||
Sbjct 900 TCACAAGACCAAAGATATGGGAAACAGCGTAGGTGGAAGTGGTCGTGGTTCTGTCTCAAT 959
Query 1326 GCCTACTAGAGACACTCCTGTCTTCACTAATTCAGGATCCGGTCGGAGCTCCAGCTCTGA 1385
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 960 GCCTACTAGAGACACTCCTGTCTTCACTAATTCAGGATCTGGTCGGAGCTCCAGCTCTGA 1019
Query 1386 TAAAGTAGCTTCCTGATGATCTAACGGCTCAGATTCCTT 1424
||||||||||||||||| |||||||| || ||| |||
Sbjct 1020 TAAAGTAGCTTCCTGAT---CTAACGGCCCAAATTACTT 1055
> Ahg493534 jgi|Araly1|493534|fgenesh2_kg.7__2967__AT4G13800.1
Length=1498
Score = 939 bits (508), Expect = 0.0
Identities = 854/1017 (84%), Gaps = 39/1017 (4%)
Strand=Plus/Plus
Query 381 ATATATAGCTAAGATGGATCAAATGTCACCTGATAACATAAATGGAGTCATTTTAGCAGT 440
|||| |||| |||||||| | |||||||||||||| ||| |||||||||||||||| ||
Sbjct 251 ATAT-TAGCAAAGATGGAGGAGATGTCACCTGATAATATACATGGAGTCATTTTAGCTGT 309
Query 441 GTCTTCAAGTATCTTTATTGGTTCTAGCTTCATCATCAAGAAAAAAGGTCTCAAGAAAGC 500
|||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 310 GTCTTCGAGTATATTCATTGGTTCTAGCTTCATCATCAAGAAAAAAGGTCTTAAGAAGGC 369
Query 501 CGGTGCAAGCGGTGTCC-GAGCAGGTGAAGGAGGGTATGGATACTTGAAGGAGCCATGGT 559
||||| ||||| | || ||||||||||||||||||||||||||||| | || || ||||
Sbjct 370 CGGTGTTAGCGGCG-CCAGAGCAGGTGAAGGAGGGTATGGATACTTGTATGAACCTTGGT 428
Query 560 GGTGGGCTGGAATGATAACAATGATTGTTGGGGA-AGTAGCTAATTTTGCAGCCTATGCA 618
|||||||||| |||||||| |||||||||||||| | |||| ||||||||||| ||||||
Sbjct 429 GGTGGGCTGGGATGATAACTATGATTGTTGGGGAGA-TAGCCAATTTTGCAGCTTATGCA 487
Query 619 TTTGCACCGGCTATTTTGGTAACACCTTTGGGAGCTTTAAGTATTATATTCAGCGCAGTG 678
||||||||||||||| | || ||||||||||||||| |||||||||| ||||||||||||
Sbjct 488 TTTGCACCGGCTATTCTAGTGACACCTTTGGGAGCTCTAAGTATTATTTTCAGCGCAGTG 547
Query 679 CTCGCGCATTTTATTTTGAAAGAGAAATTGCATATGTTTGGG-ATACTTGGTTGCATTCT 737
|| || |||||||||||| ||||||| |||||||| ||| || |||||||| || | ||
Sbjct 548 CTAGCACATTTTATTTTGGAAGAGAAGTTGCATAT-TTTCGGTATACTTGGCTGTGTCCT 606
Query 738 CTGTGTTGTTGGGTCTACAACTATAGTCTTACACGCACCACATGAACA-GAAAATAGAAT 796
||| |||||||| |||||||| || || ||||| || || || || || || | | ||||
Sbjct 607 CTGCGTTGTTGGATCTACAACGATTGTTTTACATGCTCCTCACGAGCAAGACATT-GAAT 665
Query 797 CAGTCAAGCAAATATGGCAGCTTGCTATTGAACCAGGTTTCCTTGTGTATTCTGCTGTGA 856
||||||||||| ||||||| ||||||| |||||||||||||||| |||||||||||||
Sbjct 666 CAGTCAAGCAAGTATGGCACCTTGCTACCGAACCAGGTTTCCTTGCGTATTCTGCTGTGG 725
Query 857 TTGTGATTGTGGTGGCTATAC-T-GATCTTCTACTATGAACCGCGCTACGGGAAGACTCA 914
|| || |||||||| || | | | ||||||||| || || ||||| || |||||||| ||
Sbjct 726 TTTTGGTTGTGGTG-CT-TGCATTGATCTTCTATTACGAGCCGCGTTATGGGAAGACGCA 783
Query 915 TATGATCGTATATGTCGGAATCTGCTCCTTAATGGGTTCTCTTACTGTTATGAGTGTCAA 974
|||||| |||||||| || || ||||| |||||||| |||||||| ||||||||||| ||
Sbjct 784 TATGATAGTATATGTTGGGATTTGCTCTTTAATGGGCTCTCTTACAGTTATGAGTGTTAA 843
Query 975 AGCTGTGGCGATTGCGATTAAA-CTGACATTTTCAGGGACGAATCAGTTTAAATACTTCA 1033
|||||||||||| || || ||| ||||| ||||| |||| ||||||||| || ||||||
Sbjct 844 AGCTGTGGCGATCGCCAT-AAAGCTGACTTTTTCCGGGATGAATCAGTTCAAGTACTTCC 902
Query 1034 ACACTTGGAT-TTTCATTTTAGTAGTTG-CAACT-TGTTGCATTTTGCAGATCAACTACT 1090
|| | ||||| ||| || ||||||| | | | | ||||||||||| || ||||||||||
Sbjct 903 ACGCATGGATCTTT-ATCATAGTAGT-GACCA-TATGTTGCATTTTACAAATCAACTACT 959
Query 1091 TGAACAAGGCAT-TGGATACATT-CAACACAGCGGTTATTTCTCCGGTTTACTACGTTAT 1148
|||||||||| | |||||| ||| |||||||||||| || ||||| ||||||||||||||
Sbjct 960 TGAACAAGGC-TCTGGATA-ATTTCAACACAGCGGTCATATCTCCAGTTTACTACGTTAT 1017
Query 1149 GTTCACAACATTCACAATCATAGCTAGTATGATCATGTTCAAGGATTGGGCTTCTCAGAG 1208
||| ||||||||||| ||| ||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 1018 GTTTACAACATTCACCATCTTAGCTAGCATGATCATGTTCAAGGACTGGGCTTCTCAAAG 1077
Query 1209 TGGATTA-AAGATTGCAACAGAGTTGTGTGGTTTTGTGACGATTTTATCAGGAACTTTTC 1267
||||| || ||||| || ||| | ||||| |||||||| ||||| |||||||| ||||
Sbjct 1078 CGGATTGCAA-ATTGCGACCGAGCTATGTGGCTTTGTGACCATTTTGTCAGGAACCTTTC 1136
Query 1268 TGCTTCACAAGACCAAAG-ATATGGGAAACAGTGCAAG-TGGTCGTGGTTCTA--TCTCA 1323
| || || ||||| |||| | |||||||||||||| || | || || || | || ||
Sbjct 1137 TTCTCCATAAGAC-AAAGGACATGGGAAACAGTGCCAGCTTA-CGCGGCTCCACATCGCA 1194
Query 1324 AT-GCCTACTAGAGACACTCCTGTCTTCACTAAT-TCAGGATCCGGTCGGAGCTCCA 1378
| ||||| |||| ||||||||||||| ||| ||||| ||| |||| || ||||
Sbjct 1195 CTCGCCTA---GAGATACTCCTGTCTTCA-TAAACTCAGGTTCCAGTCGCAGTTCCA 1247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58163804115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5