BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23880.1
Length=1177
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479898 jgi|Araly1|479898|fgenesh2_kg.3__2599__AT3G23880.1 1598 0.0
> Ahg479898 jgi|Araly1|479898|fgenesh2_kg.3__2599__AT3G23880.1
Length=1119
Score = 1598 bits (865), Expect = 0.0
Identities = 1024/1103 (93%), Gaps = 2/1103 (0%)
Strand=Plus/Plus
Query 1 CTGGCTCATGGATGAAACTACCAGAGAGATGTTCTCACCTCATAATCTT-CCTCTTGAAA 59
|||||||||||| ||||| |||||||| ||||||||||| | |||| || ||||||||||
Sbjct 1 CTGGCTCATGGAGGAAACCACCAGAGAAATGTTCTCACCACCTAAT-TTACCTCTTGAAA 59
Query 60 TGATGGAAGAGATTCTCTTAAGACTACCCGTAAAGTCATTGACGCGATTCAAATGCGTTT 119
||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 60 TGATGGAAGAGATTCTCTTAAGACTACCCGTAAAGTCTTTGACGCGTTTCAAATGTGTTT 119
Query 120 GCAGCTCCTGGAGATCTTTGATCTCAGAGACTCTGTTTGCTCTGAAACACGCTTTGATCT 179
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 120 GCAGCTCATGGAGATCTTTGATCTCAGAGACTCTGTTTTCTCTGAAACACGCTTTGATCT 179
Query 180 TGGAGACATCGAAGGCAACTACTTCCACGAAGAGTCCTTACGGAGTCATAACAACGTCTC 239
||||| | | ||||||||| ||||||| ||||||||||||||||||||| ||||| ||||
Sbjct 180 TGGAGGCGTTGAAGGCAACCACTTCCAAGAAGAGTCCTTACGGAGTCATCACAACTTCTC 239
Query 240 GGTACCATCTCAAGTCATGCTGCATCCATTCTCTCTACAACGCGTCAACGGTCTACGTCT 299
|||||||||||||||| || || || ||||||| ||||||| |||||||||| |||| |
Sbjct 240 GGTACCATCTCAAGTCGTGTTGTGTCAATTCTCTGTACAACGAGTCAACGGTCAACGTTT 299
Query 300 CAGAACATGATGGTGAGCTTTTAGGAAGAGATTACTATCAAGTCGTGGGGACGTGCCATG 359
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 300 TTGAACATGATGGTGAGCTTTTAGGAAGAGATTACTATCAAGTCGTGGGGACTTGTCATG 359
Query 360 GATTGGTTTGTTTCCACGTAGATTACGACAAAAGTCTCTACCTGTGGAATCCAACCATCA 419
|||||||||||||||||||||||||||| ||||| |||||| ||||||| ||||||||||
Sbjct 360 GATTGGTTTGTTTCCACGTAGATTACGAAAAAAGCCTCTACTTGTGGAACCCAACCATCA 419
Query 420 AGCTTCAACAAAGATTGTCTAGTTCGGATCTTGAAACGAGCGATGATGAGTGTGTTGTAA 479
|| |||||||||||||| || |||||||||||||||||||||||||||||| ||||||||
Sbjct 420 AGGTTCAACAAAGATTGCCTGGTTCGGATCTTGAAACGAGCGATGATGAGTTTGTTGTAA 479
Query 480 CGTATGGGTTTGGTTATGATGAATCTGAAGATGACTATAAAGTGGTTGCGTTGTTGCAAC 539
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 480 CGTATGGGTTTGGTTATGATGAATCTGAAGATGACTATAAAGTGGTTGCATTGTTGCAAA 539
Query 540 AAAGACACCAAGTGAAGATAGAGACAAAGATCTACTCAACGAGACAAAAGCTATGGAGAA 599
||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||| |
Sbjct 540 AAAGACACCAAATGAAGACAGAGGCAAAGATCTACTCAACGAGACAAAAGCTATGGAGTA 599
Query 600 GCAACACAAGTTTCCCATCTGGAGTTGTTGTTGCTGACAAATCAAGATCCGGAATCTACA 659
||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 600 GCAACACGTGTTTTCCATCTGGAGTTGTTGTTGCTGACAAATCAAGATCCGGAGTCTACA 659
Query 660 TCAACGGGACACTAAACTGGGCAGCCACTTCCTCATCATCGTCATGGACGATCATATCGT 719
|||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||| |
Sbjct 660 TCAAGGGGACACTAAATTGGGCAGCCACTTCCTCATCATCACCATGGACCATCATATCAT 719
Query 720 ATGATATGTCACGCGATGAGTTCAAGGAGCTTCCAGGGCCAGTTTGTTGTGGCAGAGGAT 779
||||||||||||||||||||||||| | ||||| |||||||||| |||| |||||||||
Sbjct 720 ATGATATGTCACGCGATGAGTTCAAACAACTTCCTGGGCCAGTTTATTGTAGCAGAGGAT 779
Query 780 GTTTTACAATGACGCTTGGAGATTTAAGAGGATGTCTTTCGATGGTGTGTTATTGCAAAG 839
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 780 GTTTTACAATGACGCTTGGAGATTTGAGAGGATGTCTTTCGATGGTGTGTTATTGCAAAG 839
Query 840 GAGCTAATGCAGATGTTTGGGTGATGAAGGAGTTTGGAGAAGTATATTCTTGGTCTAAAC 899
||||||| |||||| ||||||||||||||||||||||||||| | | |||||||||||||
Sbjct 840 GAGCTAACGCAGATATTTGGGTGATGAAGGAGTTTGGAGAAGGAGAATCTTGGTCTAAAC 899
Query 900 TCTTGAGCATTCCTGGTTTGACCGACTTTGTTCGACCGCTTTGGATCTCAGACGGTTTAG 959
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 900 TCTTGAGCATTCCTGGTTTGACTGACTTTGTTCGACCGCTATGGATCTCAGACGGTTTAG 959
Query 960 TGGTTTTATTGGAGTTTAGATCCGGTTTAGCTCTCTATAACTGTTCCAATGGAAGGTTTC 1019
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 960 TGGTTTTATTGGAGTTTAGATCCGGTTTAGCTCTCTATAACTGTGCCAATAGAGGGTTTC 1019
Query 1020 ATTACCCAGTTTCAAACAGCATAAGTGGTTGTCGTGACGCCAAAGTTTATCTCAAGACAA 1079
| || ||||||||| ||||| ||||||||||||| ||||||||||||||| |||||||||
Sbjct 1020 AGTATCCAGTTTCAGACAGCTTAAGTGGTTGTCGCGACGCCAAAGTTTATGTCAAGACAA 1079
Query 1080 TGGTTTCTCCAAATGATCTTTGA 1102
|||||||||||||||||||||||
Sbjct 1080 TGGTTTCTCCAAATGATCTTTGA 1102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43917600384
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5