BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23910.1
Length=1531
Score E
Sequences producing significant alignments: (Bits) Value
Ahg342541 jgi|Araly1|342541|fgenesh1_pg.C_scaffold_3002304 1956 0.0
Ahg930446 jgi|Araly1|930446|scaffold_302903.1 172 5e-42
> Ahg342541 jgi|Araly1|342541|fgenesh1_pg.C_scaffold_3002304
Length=1266
Score = 1956 bits (1059), Expect = 0.0
Identities = 1202/1271 (95%), Gaps = 10/1271 (1%)
Strand=Plus/Plus
Query 99 ATGGAAGAAGAAACCCACGACGGATCTCTCGATCTCCAAGAGATTCGCAGGCGCGTGAAA 158
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||
Sbjct 1 ATGGAAGAAGAAACCCACGACGGACCTCTCGATCTCCAAGAGATTCGCAGTCGCGTTAAA 60
Query 159 GAGCTCGATTTCTTTCCCCGGAATTGCAGAGAAGAGCCTGTAGAATCGTGTAGTTCCGAT 218
|||||||| ||| ||| ||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 61 GAGCTCGAGTTCATTCACCGGAATTGCAGAGATGAGCCTGGAGAATCGTGTAGTTCCGAT 120
Query 219 TACGAGACTCTGGTGGTTCAAGATTTTGTTCTTCAGTTTGAACCAAAGGTGAAAGAGATT 278
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCGAGACTC---TGGTTCAAGATTTTGTTCTTCAGTTTGAACCAAAGGTGAAAGAGATT 177
Query 279 GTTGAAGAATACGGCGATGTTGATTTATTGGATGTTGAAGATTCAGATGCTTACTTGGAG 338
|||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GTTGAAGATTACAGTGATGTTGATTTATTGGATGTTGAAGATTCAGATGCTTACTTGGAG 237
Query 339 TACTTGAGAAATGAGCTTCAGTCTGTGGAGGCTGAAAGTGCCAAAGTTTCTGAAGAAATT 398
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 238 TACTTGAGAAAGGAGCTTCATTCTGTGGAGGCTGAAAGTGCCAAAGTTTCTGAAGAAATT 297
Query 399 GAACGTCTTTCTCAGTCTCATGCCCAAGATTCTAGTAGGTTGCAAAGGGATCTTGAAGGT 458
|||||||||||| |||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct 298 GAACGTCTTTCTAAGTCTCATGCCCAAGATTCTAGTAGGCCGGAAAGGAATCTTGAAGGT 357
Query 459 CTTTTACTGTCACTGGATTCTATGTCATCTCAGGATGTGGAGAAGTCAAAAGAGAATCAA 518
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 358 CTTTTACTGTCACTGGATTCGATGTCATCACAGGATGTGGAGAAGTCAAAAGAGAATCCT 417
Query 519 CCATCTAGCAGCTCAATGGAAGTATGTGAAGTGATTGATGATGACAAGTTTAAGATGTTT 578
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 418 CCATCTAGCAGCTCAATGGAAGTATGTGAAGGGAATGATGATGACAAGTTTAAGATGTTT 477
Query 579 GAACTCGAAAATCAGATGGAGGAGAAAAGGATG-ATTCTTAAGTCATTGGAAGATCTGGA 637
|||||||||||||||||||||||||||| || | |||||||||||| |||||||||||||
Sbjct 478 GAACTCGAAAATCAGATGGAGGAGAAAA-GAAGTATTCTTAAGTCACTGGAAGATCTGGA 536
Query 638 TTCGTTACGTAAAAGGTTTGATGCTGCAGAACAAGTTGAGGACGCATTGACAGGCTTGAA 697
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TTCTTTACGTAAAAGGTTTGATGCTGCAGAACAAGTTGAGGACGCATTGACAGGCTTGAA 596
Query 698 GGTGCTCGAGTTTGACGGAAACTTTATTAGGCTCCAACTGCGAACATATATTCAAAAACT 757
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 597 GGTGCTCGAGTTTGATGGAAACTTTATTAGGCTCCAACTGCGAACATATATTCCAAAACT 656
Query 758 AGACGGTTTTCTTGGACAGCACAAATTTGACCACATTACTGAGCCATCTGAATTGATCCA 817
|||| | || ||||||||||| |||||||| |||| ||||||||||||||||||||||||
Sbjct 657 AGACAGCTTGCTTGGACAGCAAAAATTTGAACACACTACTGAGCCATCTGAATTGATCCA 716
Query 818 TGAATTGCTAATATACCTT-AAGGATAAAACTACAGAGATAACAAAATTTGAGATGTTTC 876
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TGAATTGCTAATATAC-TTGAAGGATAAAACTACAGAGATAACAAAATTTGAGATGTTTC 775
Query 877 CAAATGATATATACATAGGAGACATCATCGAGGCAGCTGATTCTTTCAGGCAGGTAAGGT 936
|||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 776 CAAATGATGTGTACATAGGAGACATCATCGAGGCTGCTGATTCTTTCAGGCAGGTAAGGT 835
Query 937 TACACTCTGCAGTGCTAGACACAAGATCTTCAGTCCAGTGGGTTGTCGCCAAAGTGCAAG 996
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 836 TACACTCTGCAGTGCTAGACACAAGGTCTTCAGTCCAGTGGGTTGTCGCCAAAGTGCAAG 895
Query 997 ATAAAATTATTTCAACAACTTTGAGAAAATATATTGTGATGAGTTCGAAAACAATTAGGT 1056
||| |||||||||| | ||| |||||||||||||||||| ||||||||||||||| |||
Sbjct 896 ATAGAATTATTTCATCCACTCTGAGAAAATATATTGTGACGAGTTCGAAAACAATCAGGC 955
Query 1057 ACACGTTTGAATACTACGACAAAGATGAAACAATTGTGGCTCATATAGCTGGAGGTATTG 1116
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 956 ACACGTTCGAATACTACGACAAAGATGAAACAATTGTGGGTCATATAGCTGGAGGTATTG 1015
Query 1117 ATGCATTTTTAAAGGTCTCTGATGGTTGGCCACTGCTGAATACCCCATTGAAGCTTGCAT 1176
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1016 ATGCATTTTTAAAGGTCTCCGATGGTTGGCCACTGTTGAATACCCCATTGAAGCTTGAAT 1075
Query 1177 CTCTCAAGAACTCTGACAATCAGTCAAAGGGAATTTCTCTGAGCCTTATCTGCAAAGTTG 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 CTCTCAAGAACTCTGACAATCAGTCAAAGGGAATTTCTCTGAGCCTTATCTGCAAAGTTG 1135
Query 1237 AGGAACTAGCGAATTCCTTGGATTTAGAGACCCGGCAAAACTTATCAGGCTTCATGGATG 1296
|||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1136 AGGATCTAGCGAACTCCTTGGATTTACAGACCCGGCAAAACTTATCAGGCTTCATGGATG 1195
Query 1297 CAATTGAGAAAATACTCGTGGAGCAAACCCGTGAAGAACTCC---AGTCCAATAAATCCT 1353
| |||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||
Sbjct 1196 CTATTGAGAAAATACTCGTGCAGCAAACCCGTGAAGAACTCCTCCAGTCCAATGAATCCT 1255
Query 1354 CCCAAAAGTGA 1364
||||||| |||
Sbjct 1256 CCCAAAAATGA 1266
> Ahg930446 jgi|Araly1|930446|scaffold_302903.1
Length=2998
Score = 172 bits (93), Expect = 5e-42
Identities = 132/151 (87%), Gaps = 2/151 (1%)
Strand=Plus/Plus
Query 425 AGATTCTAGTAGGTTGCAAAGGGATCTTGAAGGTCTTTTACTGTCACTGGATTCTATGTC 484
|||||||||| || | ||||| ||||||||||||||||| ||||||||||||| |||||
Sbjct 2798 AGATTCTAGTCGGCCGGAAAGGAATCTTGAAGGTCTTTTATTGTCACTGGATTCGATGTC 2857
Query 485 ATCTCAGGATGTGGAGAAGTCAAAAGAGAATCAACCATCTAGCAGCTCAATGGA-AGTAT 543
||| |||||||||||||||||||||||||||| ||||||||||||||| |||| | ||
Sbjct 2858 ATCACAGGATGTGGAGAAGTCAAAAGAGAATCCTCCATCTAGCAGCTCAGTGGATA-TAG 2916
Query 544 GTGAAGTGATTGATGATGACAAGTTTAAGAT 574
|||| | | ||||||||| |||||||||||
Sbjct 2917 GTGATGCAAATGATGATGAGAAGTTTAAGAT 2947
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57325818725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5