BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23930.1
Length=944
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479939 jgi|Araly1|479939|fgenesh2_kg.3__2640__AT3G23930.1 1262 0.0
> Ahg479939 jgi|Araly1|479939|fgenesh2_kg.3__2640__AT3G23930.1
Length=886
Score = 1262 bits (683), Expect = 0.0
Identities = 825/891 (93%), Gaps = 19/891 (2%)
Strand=Plus/Plus
Query 7 GAGAGGCTCTTTACATCATAAATAAAACAAGAACACAGCTTTC--AGAGAGATAGAGTGA 64
|||||| ||| || ||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1 GAGAGGGTCTCTATATCATAAATAAAACAAGAACATAGCTTTCAGAGAGAGATAGAGTGA 60
Query 65 GATTCTCCTTCATTAACATATTCTTCTTCATGTTAT-aagaagaagaagaagaagTGTCC 123
||||||||||||||||||||||||||| |||||||| || || |||| |||||||||| |
Sbjct 61 GATTCTCCTTCATTAACATATTCTTCTACATGTTATAAAAAAAAAGACGAAGAAGTGT-C 119
Query 124 AAAAGGATTAGAGATGGGTGGATGCACAAGCAAGCAAGAGAGGAGAGGTGTGAGAAGTGT 183
|||||| |||||||||| ||||||||||||||||||||||| ||| || ||||||||||
Sbjct 120 TAAAGGAGTAGAGATGGGAGGATGCACAAGCAAGCAAGAGAGAAGAAGTATGAGAAGTGT 179
Query 184 GAAGGAGACATCAAAAGACCAAAGCAGAGGAAGAAGACAC-CTGATAAAagagagagatg 242
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 180 GAAGGAGACATCAAAAGACCAAAGCAGAGGAAGAAGAC-CTTTGATAAAAGAGAGAGATG 238
Query 243 ag-agagagaaagtgatgtttcttcagcttaaagaggcggagagagagtggagaaaagag 301
|| || |||| |||||||||| ||| |||| ||||||||| ||| ||||||| ||||||
Sbjct 239 AGAAG-GAGAGAGTGATGTTTGATCAACTTAGAGAGGCGGAAAGACAGTGGAGGAAAGAG 297
Query 302 aggaagaagctgagagaggaagtgagaagactaaggaagaagctagaggaaagagaagaa 361
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 298 AGGAAGAAGCTGAGAGAGGAAGTGAGGAGACTAAGGAAGAAACTAGAGGAAAGAGAGGAA 357
Query 362 gcaaagacaacaacaacagaggaaagagagTATTGGAAGTGGGTGGTTGAGGAGATGTGT 421
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 358 GCAAAGACAACAACATCAGAGGAAAGAGAGTATTGGAAGTGGGTAGTTGAGGAGATGTGT 417
Query 422 GTAGAGAGAGCAGTGAGAGATGAAGCCGTTGAGAAATGGAAACAACTCTATTTAGCTATC 481
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 418 GTAGAGAGAGCAGTGAGAGATGAAGCCATTGAGAAATGGAAACAACTCTATTTGGCTATC 477
Query 482 AAGAATGAGCTTGATCATCTCATCTCCCACACTACTTCTTCCTCCGGAGAAGCAATCATG 541
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 478 AAGAATGAGCTTGATCATCTCATCACCCACACTACTTCTTCCTCCGGAGAAGCAATGATG 537
Query 542 CAAAGGAAACTTGAGgaacaagaagaagaagaaacagaagcaaagagagttgaagtattg 601
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | ||
Sbjct 538 CAAAGGAAACTTGAGGAACAAGAAGAAGAAGAAAAAGAAGCAAAGACAGTTGAAGAACTG 597
Query 602 agagatgaagttagagttaaagaagagaCAGTTGAGACACTTGAAGAGCAAATAGTTTTG 661
|||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 598 AGAGATGAAGTTAGAGTTAAAGAAGAGACAATTGAGACACTTCAAGAGAAAATAGTTTTG 657
Query 662 ATGGATAGACAAAAGTATGAGAAAGAAAGAGAGATTGACT-TATTGAGACAGAGTCTAAG 720
|||||||||||||||||||||||||||||||||||||| | |||||||||||||| | ||
Sbjct 658 ATGGATAGACAAAAGTATGAGAAAGAAAGAGAGATTGA-TATATTGAGACAGAGTTTGAG 716
Query 721 GATTCTTGGAAGC---AAGAAGAAAAAGAAGACAGGATCATTCGCATCAATGAATCTGTT 777
||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 717 GATTCTTGGAAGCAATAATAAGAAGAAGAAGACAGGATCATTTGCATCAATGAATCTGTT 776
Query 778 GATATTGAAGACCAAATGTGTCGAATGTACATAAACA--CTTTT-TACTCAAATAGTCTT 834
||||||||||||||||||||||||||||||||||||| | || || ||||||||||||
Sbjct 777 GATATTGAAGACCAAATGTGTCGAATGTACATAAACAAACACTTGTAGTCAAATAGTCTT 836
Query 835 CTGCAAACAGTCATATC--TCGTCAGAGAATCTTGATCCACAATGTCAtat 883
|||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 837 CTGCAA-CAGTCATATCACTCGTCAGAGAATCTTGATCCACAATGTCATAT 886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35034960723
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5