BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23950.1
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479938 jgi|Araly1|479938|fgenesh2_kg.3__2639__AT3G23950.1 1820 0.0
Ahg905531 jgi|Araly1|905531|Al_scaffold_0003_2659 1465 0.0
Ahg930504 jgi|Araly1|930504|scaffold_302961.1 1024 0.0
> Ahg479938 jgi|Araly1|479938|fgenesh2_kg.3__2639__AT3G23950.1
Length=1233
Score = 1820 bits (985), Expect = 0.0
Identities = 1150/1229 (94%), Gaps = 13/1229 (1%)
Strand=Plus/Plus
Query 28 GAAGTTTTGGTGCGACTTCCATTGAAGAGCCTCGCAAGATTCAGATCAATGTGCAAAGAA 87
||||| |||||| |||||||||| |||||||| ||||||||||||||| |||||||||||
Sbjct 10 GAAGTCTTGGTGAGACTTCCATTAAAGAGCCTTGCAAGATTCAGATCAGTGTGCAAAGAA 69
Query 88 TGGAAACTGGTCATCGACTCCGAATTCTTCCGAGATTGCTTCATGTCTCACAACTCTTCC 147
|||||||| | |||||||||||||||||||||||| |||||||||| | ||||||||||
Sbjct 70 TGGAAACTCCTGATCGACTCCGAATTCTTCCGAGATCGCTTCATGTCGCTCAACTCTTCC 129
Query 148 TCAGTCTCATGGTCAATCATCCAAACGAGACCTCACAAACTGACACTTGAAATCGTT-GG 206
||||||||||||||||||||||||||||||||||| ||||||||||| |||||| || ||
Sbjct 130 TCAGTCTCATGGTCAATCATCCAAACGAGACCTCATAAACTGACACTCGAAATC-TTGGG 188
Query 207 TCACCATGGATGCAAAACATGGGGACTTACTCGTTCTCCCGGATCTTTAGTGAGTTTCTT 266
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 189 TCACCATGGATGCAAAACATGGGGACTAACTCGTTCTCCAGGATCTTTAGTGAGTTTCTT 248
Query 267 TGCCGAGACCACAATCAGGAAACTACAAGTCTTAGCTTGTACCGATGGGTTGGTCCTTCT 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 TGCCGAGACCACAATCAGGAAACTACAAGTCTTAGCTTGTACCGATGGGTTGGTCCTTCT 308
Query 327 TTACGTAGAATCTTGCGTTGGAACTCCTATGTATTACGTTGGTAATCCTTTGTTTCAAGA 386
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 TTACGTAGAATCTAGCCATGGAACTCCTATGTATTACGTTGGTAATCCTTTGTTTCAAGA 368
Query 387 GTGGTTTCGAATCCCTCTCCGTCCTAAATACACTTCTCAAAATGTTGAGAAATTAAGGAA 446
||||||||||||||||||||||||||||||||||| ||| |||||||| |||| ||||
Sbjct 369 ATGGTTTCGAATCCCTCTCCGTCCTAAATACACTTCGCAATTTGTTGAGAGATTACGGAA 428
Query 447 CCACGAGCGTTTCAGCGACAGTGGATTGGTTACAAAGATGCAAAGTGGTATTGTTGTGAG 506
| |||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 429 CTACGAGCGTTTCAACGACGGTGGATTGGTTACAAAGATGCAGAGTGGTATTGTTGTGAG 488
Query 507 TTACAAGGTTGTGTGGTTGATCGCTCACACTTTTGCTCA-AGTCGATTTTGCGATTTACT 565
|||||||||||||||||||||||||||| |||||||| | ||||||||||| ||||||||
Sbjct 489 TTACAAGGTTGTGTGGTTGATCGCTCACGCTTTTGCT-AGAGTCGATTTTGGGATTTACT 547
Query 566 CATCTAACACAGGGGAATGGGAAATTA-AAAATGTGACTTGTCTTCATTCTGCCTAT-TG 623
||||| | ||||||||||||||||||| |||| ||| |||||||||||||||||| | ||
Sbjct 548 CATCTGATACAGGGGAATGGGAAATTAGAAAA-GTGCCTTGTCTTCATTCTGCCT-TCTG 605
Query 624 GTTTAGTCATCACAAGTCCATTGCTTTAAATGGGATTCTTCATTGGCTTTCCAACCTCAC 683
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 GTTTAGTCATCACAAGCCCATTGCTTTAAATGGGATTCTTCATTGGCTTTCCAACCTCAC 665
Query 684 CGGTTCTTTTTTAGCTTACGATTTCTATGGAGGTCATCATGATGCGTGTAGTATCATTTA 743
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 666 CGGTTCTTTTGTAGCTTACGATTTCTATGGAGGTCATAATGATGCGTGTAGTATCATGTA 725
Query 744 TTTCCCCGATAATGGAAAAGATTACGAGTTACCGCGTTTTCGGAGAACAATCACTACCTC 803
||||||||| | || | ||||||||||||||||||||||| ||||||| ||||| |||||
Sbjct 726 TTTCCCCGACATTGCACAAGATTACGAGTTACCGCGTTTTAGGAGAACCATCACGACCTC 785
Query 804 GGAAGGGTCTATTGTGTATTTCAACGAGTTTGGTGGGAACGCAAACCGCAAAGTACGGGT 863
|||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||
Sbjct 786 GGAAGGGTCTATTGTGTATTTCAACGTGTTTGGTGGGAACGCAAACCGCAGATTACGGGT 845
Query 864 TTGGAGGCTGGTCAAGTACACTGATGGTCCTGAGGCGTGGCAGCTCTTTTGGGAAGCCAG 923
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 846 TTGGAAGCTGGTCAAGTACACTGATGGTCCTGAGGCGTGGCAGCTCTTTTGGGAAGTCAG 905
Query 924 CTTGGCGTCTGTGACCAAGCTAGGTATCGATTACTTCCCGGTGGTGATGCATCCTTTGAA 983
||||| |||| ||| |||||||||| || || | |||||| |||||||||||||||||
Sbjct 906 CTTGGTGTCTTTGATCAAGCTAGGTGTC-CTT--TACCCGGTAGTGATGCATCCTTTGAA 962
Query 984 GTCTGAGATCATCTACTTGTGGAGCAGAAACAAGAAAGGTATGGTCTTGTTTAACTTGAG 1043
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 963 GTCTGAGATCATCTACTTGTGGAGCAGAGTCAAGAAAGGTATGGTCTTGTTTAACTTGAG 1022
Query 1044 GACGCATGTGTTTAGTCTTCACAAGGAATCCGAAGACGAGAGGAAGTGTATGGATGGTTG 1103
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 GACACATAAGTTTAGTCTTCACAAGGAATCCGAAGACGAGAGGAAGTGTATGGATGGTTG 1082
Query 1104 CACCTTGAGCTTTAACTGGTGCAACGAGTATATGGAGACCGTTCATAGATACTTTTCCCC 1163
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1083 CACCTTGAGCTTTAACTGGTGCAACGAGTATATGGAGACCGTTCATAGAGACTTTTCCCC 1142
Query 1164 ATCGTTTCAAGGTGGTCCTAACCTTCTCCTCGCTTCACAGTATGTTCTCCCTCGTTGGTT 1223
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
Sbjct 1143 ATCGTTTCAAGGTGGTCCTAACCTTCTCCTCGCTTCTCAATATGTTCTCCCTCGTTGGCT 1202
Query 1224 GTC-CCGTCTCCCTCGTCCACAGCCTTCT 1251
| | ||||||||||||||| |||||||||
Sbjct 1203 G-CACCGTCTCCCTCGTCCGCAGCCTTCT 1230
> Ahg905531 jgi|Araly1|905531|Al_scaffold_0003_2659
Length=1227
Score = 1465 bits (793), Expect = 0.0
Identities = 1099/1242 (88%), Gaps = 39/1242 (3%)
Strand=Plus/Plus
Query 25 TTTGAAGTTTTGGTGCGACTTCCATTGAAGAGCCTCGCAAGATTCAGATCAATGTGCAAA 84
|||||||| ||||||||||||||| | || ||||||||||||||||||||| |||||| |
Sbjct 7 TTTGAAGTCTTGGTGCGACTTCCACTAAAAAGCCTCGCAAGATTCAGATCAGTGTGCAGA 66
Query 85 GAATGGAAACTGGTCATCGACTCCGAATTCTTCCGAGATTGCTTCATGTCTCACAACTCT 144
||||||||||| | |||||||| |||||||||||||| | |||||| || | |||||||
Sbjct 67 GAATGGAAACTTCTGATCGACTCTGAATTCTTCCGAGACTACTTCATCTCGCTCAACTCT 126
Query 145 TCCTCAGTCTCATGGTCAATCATCCAAACGAGACCTCACAAACTGACACTTGAAATCGTT 204
||||||||||||||||||||||| |||||||||| ||||| | || ||||||| ||||||
Sbjct 127 TCCTCAGTCTCATGGTCAATCATTCAAACGAGACATCACATATTGTCACTTGACATCGTT 186
Query 205 GGTCACCATGGATGCAAAACATGGGGACTTACTCGTTCTCCCGGATCTTTAGTGAGTTTC 264
||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||
Sbjct 187 GGTCACCATGGATGCAAAACATGGGGACTTACTCGTTTTCCGGGATCTTTTGTGAGTTTC 246
Query 265 TTTGCCGAGACCACAATCAGGAAACTACAAGTCTTAGCTTGTACCGATGGGTTGGTCCTT 324
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 247 TTTGCCGAGACCACAATCAGGAAACTACAAGTCTTAGCTTGTACCGATGGATTGGTCCTT 306
Query 325 CTTTACGTAGAATCTTGCGTTGGAACTCCTATGTATTACGTTGGTAATCCTTTGTTTCAA 384
|||||| |||| || | | ||||||||||||| |||||||||||| |||||||||||||
Sbjct 307 ATTTACGCAGAAGCTAGTGATGGAACTCCTATGCATTACGTTGGTAGTCCTTTGTTTCAA 366
Query 385 GAGTGGTTTCGAATCCCTCTCCGTCCTAAATACACTTCTCAAAATGTTGAGAAATTAAGG 444
|| ||||||| ||| ||||||| |||| ||| || | || || | || | |
Sbjct 367 GAATGGTTTCAAATTCCTCTCCCTCCT---GACA--TC-C---AT-TT--GCAA--GATG 412
Query 445 AACCACGAGCGTTTCAGCGACAGTGGATTGGTTACAAAGATGCAAAGTGGTATTGTTGTG 504
| || ||||||||| ||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 413 -ATCATAAGCGTTTCAACGACAGTGGATTGGTTACAAAGATGCAGAGTGGTACCGTTGTG 471
Query 505 AGTTACAAGGTTGTGTGGTTGATCGCTCACACTTTTGCTCA-AGTCGATTTTGCGATTTA 563
|||||||||||||||||||||||||||||| |||||||| | ||||||||||| ||||||
Sbjct 472 AGTTACAAGGTTGTGTGGTTGATCGCTCACGCTTTTGCT-AGAGTCGATTTTGGGATTTA 530
Query 564 CTCATCTAACACAGGGGAATGGGAAATTAAAAATGTGACTTGTCTTCATTCTGCCTAT-T 622
||||||| | ||||||||||||||||||||||| ||| |||||||||||||||||| | |
Sbjct 531 CTCATCTGATACAGGGGAATGGGAAATTAAAAAAGTGCCTTGTCTTCATTCTGCCT-TCT 589
Query 623 GGTTTAGTCATCACAAGTCCATTGCTTTAAATGGGATTCTTCATTGGCTTTCCAACCTCA 682
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 GGTTTAGTCATCACAAGCCCATTGCTTTAAATGGGATTCTTCATTGGCTTTCCAACCTCA 649
Query 683 CCGGTTCTTTTTTAGCTTACGATTTCTATGGAGGTC------ATCATGATGCGTGTAG-T 735
||||||||||| |||||||||||||||||||||||| || ||||||||||| | |
Sbjct 650 CCGGTTCTTTTGTAGCTTACGATTTCTATGGAGGTCATGATGATGATGATGCGTGT-GAT 708
Query 736 ATCATTTATTTCCCCGATAATGGAAAAGATTACGAGTTACCGCGTTTTCGGAGAACAATC 795
||||| |||||||||||| |||||||||| | ||||||| ||||||| ||||||| |
Sbjct 709 ATCATACATTTCCCCGATAGTGGAAAAGATGATGAGTTACGGCGTTTTAGGAGAACCTTG 768
Query 796 ACTACCTCGGAAGGGTCTATTGTGTATTTCAACGAGTTTGGTGGGAACGCAAACCGCAAA 855
| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
Sbjct 769 TCGACCTCGGAAGGGTCTATTGTGTACTTCAACGAGTTTGGTGGGAACGGAAACCGCATA 828
Query 856 GTACGGGTTTGGAGGCTGGTCAAGTACACTGATGGTCCTGAGGCGTGGCAGCTCTTTTGG 915
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 829 TTACGGGTTTGGAGGCTGGTCAAGTACACAGATGGTCCTGAGGCGTGGCAGCTCTTTAGG 888
Query 916 GAAGCCAGCTTGGCG-TCTGTGACCAAGCTAGGTATCGATTACT-TCCCGGTGGTGATGC 973
|||| |||||||| | || ||| | | |||||||| |||| | |||| ||||| ||||
Sbjct 889 GAAGTCAGCTTGGTGACCT-TGATCGATTTAGGTATCTATTA-TATCCCTGTGGTAATGC 946
Query 974 ATCCTTTGAAGTCTGAGATCATCTACTTGTGGAGCAGAAACAAGAAAGGTATGGTCTTGT 1033
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 947 ATCCTTTGAACTCTGAGATCATCTACTTGTGGAGCAGAAACAAGAAAGGTATGGTATTGT 1006
Query 1034 TTAACTTGAGGACGCATGTGTTTAGTCTTCACAAGGAATCCGAAGACGAGAGGAAGTGTA 1093
||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1007 TTAACTTGAGGACACATGTGTTTAGTCTTCACAAGGAATTAGAAGACGAGACCAAGTGTA 1066
Query 1094 TGGATGGTTGCACCTTGAGCTTTAACTGGTGCAACGAGTATATGGAGACCGT-TCATAGA 1152
|||||||||||||||||||||||||| |||||| |||||||||||||| | | | || ||
Sbjct 1067 TGGATGGTTGCACCTTGAGCTTTAACAGGTGCAGCGAGTATATGGAGAGCATGT-ATGGA 1125
Query 1153 TACTTTTCCCCATCGT-TTCAAGGTGGTCCTAACCT-TCTCCTCGCTTCACAGTATGTTC 1210
||||||| |||||||| || | |||||| ||||| | |||| | ||||||||||||||||
Sbjct 1126 TACTTTTTCCCATCGTCTT-ACGGTGGTACTAAC-TGTCTCTTTGCTTCACAGTATGTTC 1183
Query 1211 TCCCTCGTTGGTTGTC-CCGTCTCCCTCGTCCACAGCCTTCT 1251
||||||||||| || | ||||||||||||||| |||||||||
Sbjct 1184 TCCCTCGTTGGCTG-CACCGTCTCCCTCGTCCGCAGCCTTCT 1224
> Ahg930504 jgi|Araly1|930504|scaffold_302961.1
Length=1285
Score = 1024 bits (554), Expect = 0.0
Identities = 1029/1253 (82%), Gaps = 54/1253 (4%)
Strand=Plus/Plus
Query 13 CCAGAATTGACCTT--TGAA-GTTTTGGTGCGACTTCCATTGAAGAGCCTCGCAAGATTC 69
|||||| |||| || | || || ||||||||| ||||| ||||||| |||| |||||
Sbjct 30 CCAGAAGTGACATTGGTCAACGTCTTGGTGCGATTTCCACTGAAGAGTATCGCGCGATTC 89
Query 70 AGATCAATGTGCAAAGAATGGAAACTGGTCATCGACTCCGAATTCTTCCGAGAT-TGCTT 128
||| || || |||||||||||||| || | ||||| || || |||||| ||||| | ||
Sbjct 90 AGAACAGTGAGCAAAGAATGGAAATTGTTAATCGATTCAGACTTCTTCAGAGATCT-CTA 148
Query 129 CATGTCTCACAA--C-TCTTCCTCAGTCTCATGGTCAATCATCCAAACGAGACCTCACAA 185
||| |||| || | ||||||||| |||||||||||||||| ||||||| |||||| ||
Sbjct 149 CATCTCTCTGAACTCATCTTCCTCAATCTCATGGTCAATCATTCAAACGAAACCTCA-AA 207
Query 186 A-CTGACACTTGAAATCGTTGGTCACCATGGATGCAAAACATGGGGACTTACTCGTTCTC 244
| |||||||||||||||||||| |||||||||||| ||| |||||||||| |||||||||
Sbjct 208 AGCTGACACTTGAAATCGTTGGCCACCATGGATGCGAAAGATGGGGACTTTCTCGTTCTC 267
Query 245 CCGGATCTTTAGTGAGTTTCTTTGCCGAGACCA-CAATCAGGAAACTACAA-GTCTTAGC 302
| ||||||||||| ||||||||||| |||| || |||||| |||||| || ||||||||
Sbjct 268 CTGGATCTTTAGTAAGTTTCTTTGCAGAGA-CACCAATCAATAAACTA-AATGTCTTAGC 325
Query 303 TTGTACCGATGGGTTGGTCCTTC--TTTACGTAGAATCTTGCGTTGGAACTCCTATGTAT 360
|||||| ||||||||||| | || ||| | |||| || | | ||| |||||||||||
Sbjct 326 TTGTACAGATGGGTTGGT-C-TCAGTTTGTGCAGAAACTAGTGATGGGTCTCCTATGTAT 383
Query 361 TACGTTGGTAATCCTTTGTTTCAAGAGTGGTTTCGAATCCCTC-TCCGTCCTAAATACAC 419
||| |||| || |||||||| || || |||||||||||||||| || ||| |
Sbjct 384 TACATTGGAAACCCTTTGTTGCAGGAATGGTTTCGAATCCCTCAACC-TCC----T---- 434
Query 420 TTCTCAAAATGTTGAGAAATTAAGGAACCACGAGCGTTTCAGCGACAGTGGATTGGTTAC 479
||| | ||| |||||| ||| | || ||||||||||| |||||||||||||| |||||
Sbjct 435 TTC-CGTAATTTTGAGAGATTTCGAAAGCACGAGCGTTTTAGCGACAGTGGATTAGTTAC 493
Query 480 AAAGATGCAA-AGTGGTATTGTTGTGAGTTACAAGGTTGTGTGGTTGATCGCTCACACTT 538
||||||| || | |||| | ||||||||||||||| ||||||||||| | | | || |
Sbjct 494 AAAGATG-AAGAATGGTGTCGTTGTGAGTTACAAGATTGTGTGGTTG-TTG-ACTCA-TC 549
Query 539 TTGCTCAA-GTCGATTTTGCGATTTACTCATCTAACACAGGGGA-ATGGGAAATTA-AAA 595
|||| || || || ||| ||||||||||||| | ||| |||| ||||| | | ||
Sbjct 550 CTGCT-AAGGTTGAGTTTATGATTTACTCATCTGATACA-GGGACTTGGGATA-GACGAA 606
Query 596 ATGTGACTTGTCTTCATTCTGCCTAT-TGGTTTAGTCATCACAAGTCCATTGCTTTAAAT 654
||||||||||| | ||| ||| |||| ||| ||||| ||||||| |||||||| |||
Sbjct 607 ATGTGACTTGTGTCCATACTG-CTATGTGGACTAGTCGGGACAAGTCGATTGCTTTGAAT 665
Query 655 GGGATTCTTCATTGGCTTTCCAACCTCACCGGTTCTTTTTTAGCTTACGATTTCTATGGA 714
||||||||||||||||||||||| |||||| ||||| || | || || ||||||||||||
Sbjct 666 GGGATTCTTCATTGGCTTTCCAATCTCACCAGTTCTATTATCGCATATGATTTCTATGGA 725
Query 715 GGTCATCATGATGCG-TGTAGTATCATTTATTTCCCCGATAATGGAAAAGATTACGAGTT 773
|||||| |||||| | | | ||||||| ||||||| | | |||||||||| | |||||
Sbjct 726 GGTCATGATGATG-GTTTTTGTATCATACATTTCCCTGGTGTTGGAAAAGATGATGAGTT 784
Query 774 ACCGCGTTTTCGGAGAACAATCACTACCTCGGAAGGGTCTATTGTGTATTTCAACGAGTT 833
|| ||||||||| ||||| | || |||||||||||||| ||||||||||||||||||||
Sbjct 785 ACGGCGTTTTCGAAGAACCTTTACAACCTCGGAAGGGTCCATTGTGTATTTCAACGAGTT 844
Query 834 TGGTGGGAACGCAAACCGCAAAGTACGGGTTTGGAGGCTGGTCAAGTACACTGATGGTCC 893
|| ||| | |||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 845 CCTTGAGAATGTAAACCGCACATTACGGGTTTGGAGGCTGGTCAAGTACACTGATGGTCC 904
Query 894 TGAGGCGTGGCAGCTCTTTTGGGAAGCCAGCTTGGCGTCTGTGACCAAG-CTAGGTATCG 952
|||||||||||||||||||||||||| |||||||| |||| ||| || | |||||||
Sbjct 905 TGAGGCGTGGCAGCTCTTTTGGGAAGTCAGCTTGGTGTCTTTGATGGAGTC-AGGTATCA 963
Query 953 ATTACT-TCCCGGTGGTGATGCATCCTTTGAAGTCTGAGATCATCTACTTGTGGAGCAGA 1011
|||| | |||| ||||| |||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 964 ATTA-TATCCCTGTGGTAATGCATCCTTTGAACTCTGAGATCATTTACTTCTGGAGCAGG 1022
Query 1012 AACAAGAAAGGTATGGTCTTGTTTAACTTGAGGACGCATGTGTTTAGTCTTCACAAGGAA 1071
|||||||||||| || ||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1023 AACAAGAAAGGTCTGATCTTGTTTAACTTGAGGACACAAGTGTTTAGTCTTCACAAGGAA 1082
Query 1072 TCCGAAGACGAGAGGAAGTGTATGGATGGTTGCACCTTGAGCTTTAACTGGTGCAACGAG 1131
| ||||||| | |||||||||||||||||| || || |||||| |||||| ||||
Sbjct 1083 ACTGAAGACGTTCGTAAGTGTATGGATGGTTGCGTTTTAAGTTTTAACCGGTGCAGCGAG 1142
Query 1132 TATATGGAGACCGT-TCATAGATACTTT-TCCCCATCGTTTCAAGGTGGTCCTAACCTTC 1189
|||||||||| | | | ||| ||||||| || | ||| |||||| ||||||||||| ||
Sbjct 1143 TATATGGAGAGCATAT-ATACATACTTTCTCTC-ATCATTTCAAAATGGTCCTAACCATC 1200
Query 1190 TCCTCGCTTCACAGTATGTTCTCCCTCGTTGGTTGTCC-CGTCTCCCTCGTCC 1241
||||| ||||||||||||| ||||||||||| || | | ||||||| ||||
Sbjct 1201 TCCTCTTTTCACAGTATGTTTTCCCTCGTTGGCTG-CATCATCTCCCTGGTCC 1252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46967433744
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5