BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G23955.2
Length=1618
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905530 jgi|Araly1|905530|Al_scaffold_0003_2658 627 1e-178
Ahg887668 jgi|Araly1|887668|Al_scaffold_0615_1 603 2e-171
Ahg949968 jgi|Araly1|949968|scaffold_801855.1 183 3e-45
Ahg949955 jgi|Araly1|949955|scaffold_801842.1 104 2e-21
Ahg930502 jgi|Araly1|930502|scaffold_302959.1 104 2e-21
> Ahg905530 jgi|Araly1|905530|Al_scaffold_0003_2658
Length=627
Score = 627 bits (339), Expect = 1e-178
Identities = 538/628 (86%), Gaps = 38/628 (6%)
Strand=Plus/Plus
Query 761 CGGGTGCACTCTCGGTCACTGAAGAG---C---TTTATACTAACTGATT-T-GGAGTCCG 812
|||||||||||||||||||||||||| | ||||||| || | || | ||||
Sbjct 25 CGGGTGCACTCTCGGTCACTGAAGAGATTCTGTTTTATACGAAGTTTTTCTCTCCGTCCA 84
Query 813 ATGCCAAG-TTCGATATTTCTCTCCGTTTTCATAAGTGGGTCTTTAACGAAGCAAAAACA 871
|||||||| | ||||||||||||||||||| | ||||| |||| | | | | |
Sbjct 85 ATGCCAAGCCTAGATATTTCTCTCCGTTTTCGTTTGTGGG-CTTT--TG-A-C---GA-A 135
Query 872 AGTACCATCCACATGTTTCTCGCTTGGATTTCGAGGGTCAGAGATATGACGATATGTGCA 931
|| | | |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 136 AG-A--A---ACATGTTTCTCGCTTGGATTTCGAGGGTTAGAGATATGACGATATGTGCA 189
Query 932 CAA-ACTTTCAAGCTCATCCATCATTACTCAGAATCTGTTCAGCTACCTCAATTCGGTTA 990
|| |||||||||||||| || | |||||||| || | | |||||||||||| |||||
Sbjct 190 -AACACTTTCAAGCTCATGCAGCTTTACTCAGTATTTAAACCGCTACCTCAATTTGGTTA 248
Query 991 CATGTCCAGTCTATACATTACTCTCAATGCATCA-GATTTGAAATGGTTTCCAATCTTTC 1049
|||||||||||||||| ||||||||| ||||| | |||||||||||||||||||||||||
Sbjct 249 CATGTCCAGTCTATACGTTACTCTCACTGCAT-ATGATTTGAAATGGTTTCCAATCTTTC 307
Query 1050 TTAGGAGTATCCCGAATCTGAAATCCCTCATCTTAGTG-ATGGAACGGACTGGTTCTTCC 1108
| ||||| |||||||||||||||||||||||| | | | ||| || |||||||| |
Sbjct 308 -T--GAGTAGCCCGAATCTGAAATCCCTCATCTT-G-GAACGGATTGG--TGGTTCTTTC 360
Query 1109 CATCAACTGTCTCCCAAGGCGATCAAACGAGTTAGTATTTCATCTGTGCCTGAGTGTTTG 1168
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 361 CATCAACTGTCTCCCAAGGCGATGGAACGAGTTAGTATTTCATCTGTGACTGAGTGTTTG 420
Query 1169 CTATCGTCCCTCGAGTTTGTTGAATTCAAAGCCCCAATTTGTGGA-CTTGCTCCAGAGAT 1227
||||||||||||||||||||||| |||||| |||||||||| ||| ||||||||||| ||
Sbjct 421 CTATCGTCCCTCGAGTTTGTTGATTTCAAATCCCCAATTTG-GGAACTTGCTCCAGAAAT 479
Query 1228 GATGCTAGTATGGTACTTCCTAGAGAACTCTCCCACACTCAAGAAACTCACTCTACGTTT 1287
|| ||| |||||||||||||||||||| |||||||| ||||||||||||||||||| |||
Sbjct 480 GAAGCTCGTATGGTACTTCCTAGAGAATTCTCCCACCCTCAAGAAACTCACTCTACATTT 539
Query 1288 GAAGTCTCATTCAACAAAAGATGACTTTGTCAAGAAACTCCTCAAAATCCCAAGATGCTC 1347
|||||||||||||| || ||||||||| |||| ||||||||||||||||||||||||||
Sbjct 540 GAAGTCTCATTCAATAACAGATGACTTCATCAAAAAACTCCTCAAAATCCCAAGATGCTC 599
Query 1348 TACAGAATGTGAAGTCATCTTTCTTTGA 1375
||| ||||||||||| |||||||||||
Sbjct 600 TACCGAATGTGAAGTTGTCTTTCTTTGA 627
> Ahg887668 jgi|Araly1|887668|Al_scaffold_0615_1
Length=510
Score = 603 bits (326), Expect = 2e-171
Identities = 445/500 (89%), Gaps = 18/500 (4%)
Strand=Plus/Plus
Query 882 ACATGTTTCTCG-C-TTGGATTTCGAGGGTCAGAGATATGACGATATGTGCACAA-ACTT 938
||||| |||||| | ||||| ||||||||| ||||||||||||||||||||| || ||||
Sbjct 23 ACATG-TTCTCGTCATTGGA-TTCGAGGGTTAGAGATATGACGATATGTGCA-AACACTT 79
Query 939 TCAAGCTCATCCATCATTACTCAGAATCTGTTCAGCTACCTCAATTCGGTTACATGTCCA 998
|||||||||| || | |||||||| || | | |||||||||||| |||||||||||||
Sbjct 80 TCAAGCTCATGCAGCTTTACTCAGTATTTAAACCGCTACCTCAATTTGGTTACATGTCCA 139
Query 999 GTCTATACATTACTCTCAATGCATCA-GATTTGAAATGGTTTCCAATCTTTCTTAGGAGT 1057
|||||||| ||||||||| ||||| | ||||||||||||||||||||||||| | ||||
Sbjct 140 GTCTATACGTTACTCTCACTGCAT-ATGATTTGAAATGGTTTCCAATCTTTC-T--GAGT 195
Query 1058 ATCCCGAATCTGAAATCCCTCATCTTAGTG-ATGGAACGGACTGGTTCTTCCCATCAACT 1116
| |||||||||||||||||||||||| | | | ||| || |||||||| |||||||||
Sbjct 196 AGCCCGAATCTGAAATCCCTCATCTT-G-GAACGGATTGG--TGGTTCTTTCCATCAACT 251
Query 1117 GTCTCCCAAGGCGATCAAACGAGTTAGTATTTCATCTGTGCCTGAGTGTTTGCTATCGTC 1176
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 252 GTCTCCCAAGGCGATGGAACGAGTTAGTATTTCATCTGTGACTGAGTGTTTGCTATCGTC 311
Query 1177 CCTCGAGTTTGTTGAATTCAAAGCCCCAATTTGTGGA-CTTGCTCCAGAGATGATGCTAG 1235
||||||||||||||| |||||| |||||||||| ||| ||||||||||| |||| ||| |
Sbjct 312 CCTCGAGTTTGTTGATTTCAAATCCCCAATTTG-GGAACTTGCTCCAGAAATGAAGCTCG 370
Query 1236 TATGGTACTTCCTAGAGAACTCTCCCACACTCAAGAAACTCACTCTACGTTTGAAGTCTC 1295
||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||
Sbjct 371 TATGGTACTTCCTAGAGAATTCTCCCACCCTCAAGAAACTCACTCTACATTTGAAGTCTC 430
Query 1296 ATTCAACAAAAGATGACTTTGTCAAGAAACTCCTCAAAATCCCAAGATGCTCTACAGAAT 1355
|||||| || ||||||||| |||| ||||||||||||||||||||||||||||| ||||
Sbjct 431 ATTCAATAACAGATGACTTCATCAAAAAACTCCTCAAAATCCCAAGATGCTCTACCGAAT 490
Query 1356 GTGAAGTCATCTTTCTTTGA 1375
||||||| |||||||||||
Sbjct 491 GTGAAGTTGTCTTTCTTTGA 510
> Ahg949968 jgi|Araly1|949968|scaffold_801855.1
Length=1913
Score = 183 bits (99), Expect = 3e-45
Identities = 237/301 (79%), Gaps = 20/301 (7%)
Strand=Plus/Plus
Query 234 CTTTGTTAACTCAGATTCTTAATCATCTTCCCACAGAGGAAGCTGTGAAGACAAGCGTTT 293
|||||||| ||| || |||||| ||||||| ||| |||| | ||| |||||||||||||
Sbjct 102 CTTTGTTATGTCACATACTTAATTATCTTCCGACAAAGGATGTTGTTAAGACAAGCGTTT 161
Query 294 TATCCACCAGATGGAGAACTCTCTGGCTTTGGGTTCATAATTTGGAATTGTCATTTTCGA 353
|||||||||||||||||| ||| ||||| | ||||| | |||||||||| ||| | ||
Sbjct 162 TATCCACCAGATGGAGAAGTCTTTGGCTCTCGGTTCCTCGTTTGGAATTGG-ATTCTAGA 220
Query 354 -AGTTCTCA-AGTTTCAATGCCTTTTTGAGTTTTGGTAACT-GGTTTTTCGATTCCGATA 410
| ||||| | ||||||||||||| |||||||| || | | ||| |||||||||| |||
Sbjct 221 GATTTCTCTGA-TTTCAATGCCTTTGTGAGTTTTTGTGA-TAGGTATTTCGATTCCAATA 278
Query 411 GAGTTTCATGCATAGAGA-GCCTCAAGTTATCT-TTAGATGGA-AATGATGCA--TC-CT 464
| |||| ||||||| | | || |||||||| || || | || | ||||| | | | ||
Sbjct 279 GGGTTTTATGCATAAACAAGC-TCAAGTTAACTATTGG-TG-ACAATGAAGAAGATGGCT 335
Query 465 ---ATCTCAAACCATGGATTGATGCCTTT-GTTAAGCGTAAGATCCAACGTCTACATGTT 520
||||||| ||||||||||||| | | |||||||||| |||||| |||| |||||
Sbjct 336 TTTATCTCAAGTCATGGATTGATGC-TGCAGCTAAGCGTAAGCTCCAACATCTAAATGTT 394
Query 521 C 521
|
Sbjct 395 C 395
> Ahg949955 jgi|Araly1|949955|scaffold_801842.1
Length=403
Score = 104 bits (56), Expect = 2e-21
Identities = 155/200 (78%), Gaps = 17/200 (9%)
Strand=Plus/Plus
Query 220 CCAGTTACCAGATCCTTTG---TTA-ACTCAGATTCTTAATCATCTTCCCACAGAGGAAG 275
||||||||| |||| |||| ||| | ||| || ||| |||||||||||| | ||| |
Sbjct 100 CCAGTTACCTGATCATTTGATATTATA-TCACATACTTGATCATCTTCCCATAAAGG-A- 156
Query 276 C-T-GTGAAGACAAGCGTTTTATCCACCAGATGGAGAACTCTCTGGCTTTGGGTTCATAA 333
| | || | |||||||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct 157 CTTAGTTACCACAAGCGTTTTATCCACCAGATGGAGAAGTCTCTGGCTTTCGGTTCCTTG 216
Query 334 TTTGGAATTGTCATTTTCGAAG-TTCTCAAGTTTCA-ATGCCTTTT-TGAGTTTTGGTAA 390
|||| || || || ||| ||||||| | || || | |||| ||||||||||| |
Sbjct 217 TTTGAAACTGAAATCGA-GAAAATTCTCAAACTCCATAT-C-TTTTGTGAGTTTTGGTGA 273
Query 391 C-TGGTTTTTCGATTCCGAT 409
| || |||||| ||||||||
Sbjct 274 CATG-TTTTTCAATTCCGAT 292
> Ahg930502 jgi|Araly1|930502|scaffold_302959.1
Length=2228
Score = 104 bits (56), Expect = 2e-21
Identities = 77/86 (90%), Gaps = 5/86 (6%)
Strand=Plus/Plus
Query 26 AGAAAGGGTTCTAGGATGGATCATGAAGATGTTACCAGGAG-AGCCGTCGAAAAGAAGAA 84
||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||| |
Sbjct 2133 AGAAAGGGTTCTAGGATGGATCATGAAGATGTTCCCAGGAGGA-CCGTCGAAAAGAAGGA 2191
Query 85 CAAGCTAGCTTCGTCGTTAATACATG 110
||||| |||||| || | ||| ||||
Sbjct 2192 CAAGCAAGCTTC-TC-T-AATGCATG 2214
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60639670040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5