BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G23955.2 Length=1618 Score E Sequences producing significant alignments: (Bits) Value Ahg905530 jgi|Araly1|905530|Al_scaffold_0003_2658 627 1e-178 Ahg887668 jgi|Araly1|887668|Al_scaffold_0615_1 603 2e-171 Ahg949968 jgi|Araly1|949968|scaffold_801855.1 183 3e-45 Ahg949955 jgi|Araly1|949955|scaffold_801842.1 104 2e-21 Ahg930502 jgi|Araly1|930502|scaffold_302959.1 104 2e-21 > Ahg905530 jgi|Araly1|905530|Al_scaffold_0003_2658 Length=627 Score = 627 bits (339), Expect = 1e-178 Identities = 538/628 (86%), Gaps = 38/628 (6%) Strand=Plus/Plus Query 761 CGGGTGCACTCTCGGTCACTGAAGAG---C---TTTATACTAACTGATT-T-GGAGTCCG 812 |||||||||||||||||||||||||| | ||||||| || | || | |||| Sbjct 25 CGGGTGCACTCTCGGTCACTGAAGAGATTCTGTTTTATACGAAGTTTTTCTCTCCGTCCA 84 Query 813 ATGCCAAG-TTCGATATTTCTCTCCGTTTTCATAAGTGGGTCTTTAACGAAGCAAAAACA 871 |||||||| | ||||||||||||||||||| | ||||| |||| | | | | | Sbjct 85 ATGCCAAGCCTAGATATTTCTCTCCGTTTTCGTTTGTGGG-CTTT--TG-A-C---GA-A 135 Query 872 AGTACCATCCACATGTTTCTCGCTTGGATTTCGAGGGTCAGAGATATGACGATATGTGCA 931 || | | |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 136 AG-A--A---ACATGTTTCTCGCTTGGATTTCGAGGGTTAGAGATATGACGATATGTGCA 189 Query 932 CAA-ACTTTCAAGCTCATCCATCATTACTCAGAATCTGTTCAGCTACCTCAATTCGGTTA 990 || |||||||||||||| || | |||||||| || | | |||||||||||| ||||| Sbjct 190 -AACACTTTCAAGCTCATGCAGCTTTACTCAGTATTTAAACCGCTACCTCAATTTGGTTA 248 Query 991 CATGTCCAGTCTATACATTACTCTCAATGCATCA-GATTTGAAATGGTTTCCAATCTTTC 1049 |||||||||||||||| ||||||||| ||||| | ||||||||||||||||||||||||| Sbjct 249 CATGTCCAGTCTATACGTTACTCTCACTGCAT-ATGATTTGAAATGGTTTCCAATCTTTC 307 Query 1050 TTAGGAGTATCCCGAATCTGAAATCCCTCATCTTAGTG-ATGGAACGGACTGGTTCTTCC 1108 | ||||| |||||||||||||||||||||||| | | | ||| || |||||||| | Sbjct 308 -T--GAGTAGCCCGAATCTGAAATCCCTCATCTT-G-GAACGGATTGG--TGGTTCTTTC 360 Query 1109 CATCAACTGTCTCCCAAGGCGATCAAACGAGTTAGTATTTCATCTGTGCCTGAGTGTTTG 1168 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 361 CATCAACTGTCTCCCAAGGCGATGGAACGAGTTAGTATTTCATCTGTGACTGAGTGTTTG 420 Query 1169 CTATCGTCCCTCGAGTTTGTTGAATTCAAAGCCCCAATTTGTGGA-CTTGCTCCAGAGAT 1227 ||||||||||||||||||||||| |||||| |||||||||| ||| ||||||||||| || Sbjct 421 CTATCGTCCCTCGAGTTTGTTGATTTCAAATCCCCAATTTG-GGAACTTGCTCCAGAAAT 479 Query 1228 GATGCTAGTATGGTACTTCCTAGAGAACTCTCCCACACTCAAGAAACTCACTCTACGTTT 1287 || ||| |||||||||||||||||||| |||||||| ||||||||||||||||||| ||| Sbjct 480 GAAGCTCGTATGGTACTTCCTAGAGAATTCTCCCACCCTCAAGAAACTCACTCTACATTT 539 Query 1288 GAAGTCTCATTCAACAAAAGATGACTTTGTCAAGAAACTCCTCAAAATCCCAAGATGCTC 1347 |||||||||||||| || ||||||||| |||| |||||||||||||||||||||||||| Sbjct 540 GAAGTCTCATTCAATAACAGATGACTTCATCAAAAAACTCCTCAAAATCCCAAGATGCTC 599 Query 1348 TACAGAATGTGAAGTCATCTTTCTTTGA 1375 ||| ||||||||||| ||||||||||| Sbjct 600 TACCGAATGTGAAGTTGTCTTTCTTTGA 627 > Ahg887668 jgi|Araly1|887668|Al_scaffold_0615_1 Length=510 Score = 603 bits (326), Expect = 2e-171 Identities = 445/500 (89%), Gaps = 18/500 (4%) Strand=Plus/Plus Query 882 ACATGTTTCTCG-C-TTGGATTTCGAGGGTCAGAGATATGACGATATGTGCACAA-ACTT 938 ||||| |||||| | ||||| ||||||||| ||||||||||||||||||||| || |||| Sbjct 23 ACATG-TTCTCGTCATTGGA-TTCGAGGGTTAGAGATATGACGATATGTGCA-AACACTT 79 Query 939 TCAAGCTCATCCATCATTACTCAGAATCTGTTCAGCTACCTCAATTCGGTTACATGTCCA 998 |||||||||| || | |||||||| || | | |||||||||||| ||||||||||||| Sbjct 80 TCAAGCTCATGCAGCTTTACTCAGTATTTAAACCGCTACCTCAATTTGGTTACATGTCCA 139 Query 999 GTCTATACATTACTCTCAATGCATCA-GATTTGAAATGGTTTCCAATCTTTCTTAGGAGT 1057 |||||||| ||||||||| ||||| | ||||||||||||||||||||||||| | |||| Sbjct 140 GTCTATACGTTACTCTCACTGCAT-ATGATTTGAAATGGTTTCCAATCTTTC-T--GAGT 195 Query 1058 ATCCCGAATCTGAAATCCCTCATCTTAGTG-ATGGAACGGACTGGTTCTTCCCATCAACT 1116 | |||||||||||||||||||||||| | | | ||| || |||||||| ||||||||| Sbjct 196 AGCCCGAATCTGAAATCCCTCATCTT-G-GAACGGATTGG--TGGTTCTTTCCATCAACT 251 Query 1117 GTCTCCCAAGGCGATCAAACGAGTTAGTATTTCATCTGTGCCTGAGTGTTTGCTATCGTC 1176 ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 252 GTCTCCCAAGGCGATGGAACGAGTTAGTATTTCATCTGTGACTGAGTGTTTGCTATCGTC 311 Query 1177 CCTCGAGTTTGTTGAATTCAAAGCCCCAATTTGTGGA-CTTGCTCCAGAGATGATGCTAG 1235 ||||||||||||||| |||||| |||||||||| ||| ||||||||||| |||| ||| | Sbjct 312 CCTCGAGTTTGTTGATTTCAAATCCCCAATTTG-GGAACTTGCTCCAGAAATGAAGCTCG 370 Query 1236 TATGGTACTTCCTAGAGAACTCTCCCACACTCAAGAAACTCACTCTACGTTTGAAGTCTC 1295 ||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| Sbjct 371 TATGGTACTTCCTAGAGAATTCTCCCACCCTCAAGAAACTCACTCTACATTTGAAGTCTC 430 Query 1296 ATTCAACAAAAGATGACTTTGTCAAGAAACTCCTCAAAATCCCAAGATGCTCTACAGAAT 1355 |||||| || ||||||||| |||| ||||||||||||||||||||||||||||| |||| Sbjct 431 ATTCAATAACAGATGACTTCATCAAAAAACTCCTCAAAATCCCAAGATGCTCTACCGAAT 490 Query 1356 GTGAAGTCATCTTTCTTTGA 1375 ||||||| ||||||||||| Sbjct 491 GTGAAGTTGTCTTTCTTTGA 510 > Ahg949968 jgi|Araly1|949968|scaffold_801855.1 Length=1913 Score = 183 bits (99), Expect = 3e-45 Identities = 237/301 (79%), Gaps = 20/301 (7%) Strand=Plus/Plus Query 234 CTTTGTTAACTCAGATTCTTAATCATCTTCCCACAGAGGAAGCTGTGAAGACAAGCGTTT 293 |||||||| ||| || |||||| ||||||| ||| |||| | ||| ||||||||||||| Sbjct 102 CTTTGTTATGTCACATACTTAATTATCTTCCGACAAAGGATGTTGTTAAGACAAGCGTTT 161 Query 294 TATCCACCAGATGGAGAACTCTCTGGCTTTGGGTTCATAATTTGGAATTGTCATTTTCGA 353 |||||||||||||||||| ||| ||||| | ||||| | |||||||||| ||| | || Sbjct 162 TATCCACCAGATGGAGAAGTCTTTGGCTCTCGGTTCCTCGTTTGGAATTGG-ATTCTAGA 220 Query 354 -AGTTCTCA-AGTTTCAATGCCTTTTTGAGTTTTGGTAACT-GGTTTTTCGATTCCGATA 410 | ||||| | ||||||||||||| |||||||| || | | ||| |||||||||| ||| Sbjct 221 GATTTCTCTGA-TTTCAATGCCTTTGTGAGTTTTTGTGA-TAGGTATTTCGATTCCAATA 278 Query 411 GAGTTTCATGCATAGAGA-GCCTCAAGTTATCT-TTAGATGGA-AATGATGCA--TC-CT 464 | |||| ||||||| | | || |||||||| || || | || | ||||| | | | || Sbjct 279 GGGTTTTATGCATAAACAAGC-TCAAGTTAACTATTGG-TG-ACAATGAAGAAGATGGCT 335 Query 465 ---ATCTCAAACCATGGATTGATGCCTTT-GTTAAGCGTAAGATCCAACGTCTACATGTT 520 ||||||| ||||||||||||| | | |||||||||| |||||| |||| ||||| Sbjct 336 TTTATCTCAAGTCATGGATTGATGC-TGCAGCTAAGCGTAAGCTCCAACATCTAAATGTT 394 Query 521 C 521 | Sbjct 395 C 395 > Ahg949955 jgi|Araly1|949955|scaffold_801842.1 Length=403 Score = 104 bits (56), Expect = 2e-21 Identities = 155/200 (78%), Gaps = 17/200 (9%) Strand=Plus/Plus Query 220 CCAGTTACCAGATCCTTTG---TTA-ACTCAGATTCTTAATCATCTTCCCACAGAGGAAG 275 ||||||||| |||| |||| ||| | ||| || ||| |||||||||||| | ||| | Sbjct 100 CCAGTTACCTGATCATTTGATATTATA-TCACATACTTGATCATCTTCCCATAAAGG-A- 156 Query 276 C-T-GTGAAGACAAGCGTTTTATCCACCAGATGGAGAACTCTCTGGCTTTGGGTTCATAA 333 | | || | |||||||||||||||||||||||||||| ||||||||||| ||||| | Sbjct 157 CTTAGTTACCACAAGCGTTTTATCCACCAGATGGAGAAGTCTCTGGCTTTCGGTTCCTTG 216 Query 334 TTTGGAATTGTCATTTTCGAAG-TTCTCAAGTTTCA-ATGCCTTTT-TGAGTTTTGGTAA 390 |||| || || || ||| ||||||| | || || | |||| ||||||||||| | Sbjct 217 TTTGAAACTGAAATCGA-GAAAATTCTCAAACTCCATAT-C-TTTTGTGAGTTTTGGTGA 273 Query 391 C-TGGTTTTTCGATTCCGAT 409 | || |||||| |||||||| Sbjct 274 CATG-TTTTTCAATTCCGAT 292 > Ahg930502 jgi|Araly1|930502|scaffold_302959.1 Length=2228 Score = 104 bits (56), Expect = 2e-21 Identities = 77/86 (90%), Gaps = 5/86 (6%) Strand=Plus/Plus Query 26 AGAAAGGGTTCTAGGATGGATCATGAAGATGTTACCAGGAG-AGCCGTCGAAAAGAAGAA 84 ||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||| | Sbjct 2133 AGAAAGGGTTCTAGGATGGATCATGAAGATGTTCCCAGGAGGA-CCGTCGAAAAGAAGGA 2191 Query 85 CAAGCTAGCTTCGTCGTTAATACATG 110 ||||| |||||| || | ||| |||| Sbjct 2192 CAAGCAAGCTTC-TC-T-AATGCATG 2214 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60639670040 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5