BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G23960.1

Length=1209
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg930507 jgi|Araly1|930507|scaffold_302964.1                        128    9e-29
  Ahg496820 jgi|Araly1|496820|fgenesh2_kg.8__2636__AT5G65850.1        91.6    1e-17
  Ahg931794 jgi|Araly1|931794|scaffold_304251.1                       60.2    3e-08
  Ahg336232 jgi|Araly1|336232|fgenesh1_pg.C_scaffold_1002797          52.8    6e-06


> Ahg930507 jgi|Araly1|930507|scaffold_302964.1
Length=285

 Score =  128 bits (69),  Expect = 9e-29
 Identities = 154/192 (80%), Gaps = 18/192 (9%)
 Strand=Plus/Plus

Query  1027  TTATACTTTGCAGGAATGATTGGTACAAGTGAAATTGTG---TTG--TT-CC-GCCCAGA  1079
             ||||||||||| || ||||||| ||||| ||||||||||   |||  || || | |||||
Sbjct  64    TTATACTTTGCTGGTATGATTGATACAAATGAAATTGTGTTCTTGCCTTCCCAG-CCAGA  122

Query  1080  TGA-G-CCTCTTTGCGTTTTCTACTACAATATCGATAGAAACACGATCAAAAGAGTTGGA  1137
             | | | || | ||  ||| |||||||||||||||| ||||| ||||| | |||||||| |
Sbjct  123   TTATGACC-C-TTATGTTGTCTACTACAATATCGAGAGAAAGACGATGATAAGAGTTGAA  180

Query  1138  ATCCGAGGATTAGAAGCGTTTAA-G-TA-T---TTTCGCATCTTTCTAAACCATGTAGAG  1191
             |||| ||||   ||||| ||||| | || |   || | ||||||||||||||||||||||
Sbjct  181   ATCCAAGGAACCGAAGCCTTTAAGGTTAGTGGATTCCACATCTTTCTAAACCATGTAGAG  240

Query  1192  AACGTGAAGCTT  1203
             ||||||||||||
Sbjct  241   AACGTGAAGCTT  252


> Ahg496820 jgi|Araly1|496820|fgenesh2_kg.8__2636__AT5G65850.1
Length=1179

 Score = 91.6 bits (49),  Expect = 1e-17
 Identities = 101/125 (81%), Gaps = 8/125 (6%)
 Strand=Plus/Plus

Query  608  GTGAGGGGTATCAAGTTCTAACACTAGGAACTGGA-AAGCTGTCATGGAGAATGATCAAA  666
            |||||| | |||||||||| ||||||||||||||| || |||||||||||||||||  ||
Sbjct  563  GTGAGGAGCATCAAGTTCTGACACTAGGAACTGGAGAA-CTGTCATGGAGAATGATTGAA  621

Query  667  TGTTGCTTAAACTACCAACATCCTCTTAAAAATAGTGAGATATGCATCAATGGTGTTTTG  726
            |||| | | | ||  | | || | ||  |   |  |||||||||||||||||||||||||
Sbjct  622  TGTTCCAT-ACCT--C-ATATTC-CTGGATTGT-CTGAGATATGCATCAATGGTGTTTTG  675

Query  727  TATTA  731
            |||||
Sbjct  676  TATTA  680


> Ahg931794 jgi|Araly1|931794|scaffold_304251.1
Length=476

 Score = 60.2 bits (32),  Expect = 3e-08
 Identities = 32/32 (100%), Gaps = 0/32 (0%)
 Strand=Plus/Plus

Query  705  GATATGCATCAATGGTGTTTTGTATTACCTAG  736
            ||||||||||||||||||||||||||||||||
Sbjct  279  GATATGCATCAATGGTGTTTTGTATTACCTAG  310


> Ahg336232 jgi|Araly1|336232|fgenesh1_pg.C_scaffold_1002797
Length=888

 Score = 52.8 bits (28),  Expect = 6e-06
 Identities = 28/28 (100%), Gaps = 0/28 (0%)
 Strand=Plus/Plus

Query  705  GATATGCATCAATGGTGTTTTGTATTAC  732
            ||||||||||||||||||||||||||||
Sbjct  345  GATATGCATCAATGGTGTTTTGTATTAC  372



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 45137533728


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5