BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24000.1
Length=1998
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479935 jgi|Araly1|479935|fgenesh2_kg.3__2636__AT3G24000.1 2780 0.0
> Ahg479935 jgi|Araly1|479935|fgenesh2_kg.3__2636__AT3G24000.1
Length=1875
Score = 2780 bits (1505), Expect = 0.0
Identities = 1758/1876 (94%), Gaps = 33/1876 (2%)
Strand=Plus/Plus
Query 1 ATGGCATTGCGTTTCCCGCCTCGTCTCCTCTCTCAGCTGAAGCTATCTCGGCGTCTGA-A 59
||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| | |
Sbjct 1 ATGGCCTTGCGTTTCCCGTCTCGTCTCCTCTCCCAGCTGAAGCTATCTCGGCGTCT-ACA 59
Query 60 TTCTCTCCCGGCACCGGTATCTGAAGATTCCGAAGACGAATCTTTAAAATTCCCATCCAA 119
|||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 60 TTCTCTTCCGGCACCGTTATCTGAAGATTCCGATGACGAATCTTTAAAATTCCCATCCAA 119
Query 120 TGATCTTCTTCTCCGAACGAGTAGCAATGATCTCGAGGGCAGTTATATTCCCGCCGATAG 179
|||||| | || | | ||| | | | | | || | |||| ||||||
Sbjct 120 TGATCT-C------GA--G-G--GCA--G-T-T--A------T-AT-T-CCCGTCGATAG 152
Query 180 ACGTTTCTACAACACGCTGCTGAAGAAATGTACAGTCTTTAAGTTGCTCATTCAGGGAAG 239
||||||||||||||||||| |||||||||||||||||||||| || |||| |||||||||
Sbjct 153 ACGTTTCTACAACACGCTGTTGAAGAAATGTACAGTCTTTAAATTACTCACTCAGGGAAG 212
Query 240 GATCGTTCATGCTCATATCCTTCAATCTATCTTTCGTCATGA-CATTGTTATGGGCAACA 298
|||||||||||||||| | ||||||||||||||||| |||| | | |||||| |||||
Sbjct 213 GATCGTTCATGCTCATCTTATTCAATCTATCTTTCGTTATGATC-TCGTTATGAACAACA 271
Query 299 CTCTTCTCAATATGTATGCTAAATGCGGAAGTTTGGAGGAAGCTCGTAAAGTGTTCGAAA 358
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 272 CTCTTCTCAATATGTATGCGAAATGCGGAAGTTTGGAGGAAGCTCGTAAAGTGTTCGACA 331
Query 359 AAATGCCTCAGAGAGATTTTGTTACTTGGACTACTTTGATTTCTGGTTACTCGCAGCATG 418
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 AAATGCCTGAGAGAGATTTTGTTACTTGGACTACTTTGATTTCTGGTTACTCGCAGCATG 391
Query 419 ATCGACCTTGTGATGCGTTACttttttttAATCAGATGTTGAGATTTGGATATAGTCCCA 478
|| |||||| |||||||||| | || |||||||||||| |||||||||||| |||||| |
Sbjct 392 ATAGACCTTTTGATGCGTTAGTATTGTTTAATCAGATGCTGAGATTTGGATTTAGTCCTA 451
Query 479 ATGAGTTCACTTTGTCTAGTGTGATCAAAGCTGCTGCAGCTGAGAGAAGGGGATGTTGTG 538
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 452 ATGAGTTCACTTTGTCTAGTGTGATCAAAGCTGCTGCTGCTGAGAGAAGGGGTTGTTGTG 511
Query 539 GTCATCAACTTCATGGGTTCTGTGTAAAATGTGGTTTTGATTCGAATGTTCATGTTGGTA 598
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 512 GTCATCAACTTCATGGGTTTTGTGTTAAGTGTGGTTTTGATTCGAATGTTCATGTTGGTA 571
Query 599 GTGCTCTTCTTGATTTGTATACTCGCTATGGTCTTATGGATGATGCACAATTAGTCTTTG 658
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||
Sbjct 572 GTGCTCTTCTTGATTTGTACACTCGCTATGGTCTTATGGATGATGCACAATTGGTCTCTG 631
Query 659 ATGCGCTTGAGAGCAGGAATGATGTTTCTTGGAATGCTCTGATTGCTGGTCATGCTAGGA 718
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 632 ATGCCCTTGAGAGCAGGAATGATGTTTCTTGGAATGCTCTGATTGCTGGCCATGCTAGGA 691
Query 719 GAAGTGGTACAGAGAAAGCTCTGGAGCTTTTTCAAGGGATGCTTAGAGATGGTTTTAGAC 778
| ||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 692 GGTGTGGTACAGAGAAGGCTCTTGAGCTTTTTCAAGGGATGCTTAGAGAGGGTTTTAGAC 751
Query 779 CTTCCCATTTCTCATACGCTAGCCTCTTTGGTGCTTGTTCCAGTACAGGGTTCTTGGAGC 838
||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 752 CTTCCCATTTCTCGTATGCTAGCCTCTTTGGTGCTTGTTCCAGTACTGGGTTCTTGGAGC 811
Query 839 AAGGGAAATGGGTTCACGCTTATATGATTAAATCCGGTGAAAAGCTTGTGGCCTTCGCGG 898
|||||||||||||||| || |||||||||||||||||||||||||||||||| || || |
Sbjct 812 AAGGGAAATGGGTTCATGCGTATATGATTAAATCCGGTGAAAAGCTTGTGGCTTTTGCAG 871
Query 899 GAAACACTCTTCTTGACATGTATGCAAAATCAGGAAGCATCCATGACGCGAGGAAAATAT 958
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 872 GAAACACTCTTCTTGACATGTATGCGAAATCAGGAAGCATCCATGACGCGAGGAAAATAT 931
Query 959 TCGATAGATTGGCTAAAAGGGATGTGGTGTCTTGGAACTCGCTGCTGACTGCTTATGCCC 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 932 TCGATAGATTGGCTAAAAGGGATGTGGTGTCTTGGAACTCGCTGCTGACTGCTTACGCCC 991
Query 1019 AACATGGATTTGGAAAGGAAGCAGTGTGGTGGTTCGAGGAAATGAGGAGGGTTGGGATTC 1078
|||||||||||||||| ||||||||||| |||||||| ||||||||||||| |||||||
Sbjct 992 AACATGGATTTGGAAAAGAAGCAGTGTGCTGGTTCGAAGAAATGAGGAGGGGCGGGATTC 1051
Query 1079 GCCCCAATGAAATCTCGTTTCTCTCTGTGCTTACAGCTTGCAGCCATTCTGGTCTTCTAG 1138
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1052 GTCCCAATGAAATCTCGTTTCTCTCAGTGCTTACAGCTTGCAGCCATTCTGGTCTTCTTG 1111
Query 1139 ATGAAGGATGGCATTACTATGAATTGATGAAGAAAGATGGGATAGTTCCCGAGGCTTGGC 1198
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1112 ATGAAGGATGGCATTACTATGAATTGATGAAGAAAGATGGGATAGTACTCGAGGCTTGGC 1171
Query 1199 ACTACGTCAC-AGTCGTAGACCTTCTTGGGCGAGCCGGTGATCTTAATAGGGCACTGAGA 1257
|||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1172 ACTACGTCACGA-TCGTAGATCTTCTTGGGCGAGCCGGTGATCTTAATAGGGCACTGAGA 1230
Query 1258 TTCATTGAAGAAATGCCAATAGAACCCACTGCAGCCATCTGGAAAGCCCTGCTTAATGCT 1317
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1231 TTCATCGAAGAAATGCCAATAGAACCCACTGCAGCCATCTGGAAAGCTCTGCTTAATGCT 1290
Query 1318 TGTAGAATGCATAAGAATACGGAATTGGGAGCTTATGCGGCTGAGCATGTATTTGAACTT 1377
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1291 TGTAGAATGCATAAAAATACGGAATTGGGAGCTTATGCCGCTGAGCATGTATTTGAACTT 1350
Query 1378 GACCCTGACGACCCTGGTCCCCATGTAATACTATATAACATCTATGCATCTGGTGGCAGA 1437
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1351 GACCCAGACGACCCTGGTCCCCATGTAATACTATATAACATCTATGCATCAGGTGGCAGA 1410
Query 1438 TGGAACGATGCTGCGAGAGTGAGAAAGAAGATGAAGGAAAGTGGAGTGAAGAAGGAACCT 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1411 TGGAACGATGCTGCGAGAGTGAGAAAGAAGATGAAGGAAAGTGGAGTGAAGAAGGAACCT 1470
Query 1498 GCTTGCAGTTGGGTAGAGATTGAGAATGCAATCCACATGTTTGTGGCAAATGATGAACGT 1557
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1471 GCTTGCAGTTGGGTAGAGATTGAGAATGCAATCCATATGTTTGTGGCAAATGATGAACGT 1530
Query 1558 CATCCACAGAGGGAGGAGATTGCTCGGAAGTGGGAAGAGGTTTTAGCAAAGATCAAGGAG 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1531 CATCCACAGAGGGAGGAGATTGCTCGGAAGTGGGAAGAGGTTTTAGCAAAGATCAAGGAG 1590
Query 1618 TTGGGATATGTGCCAGACACTAGCCATGTAATAGTCCATGTGGATCAACAGGAGAGGGAA 1677
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1591 TTGGGATATGTGCCCGACACTAGCCATGTAATAGTCCATGTGGATCAACAGGAGAGGGAA 1650
Query 1678 GTGAATTTACAATATCATAGTGAGAAAATTGCGTTGGCGTTTGCGCTTCTCAACACTCCT 1737
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 1651 GTGAATTTACAATATCATAGTGAGAAAATTGCTTTGGCATTTGCGCTTCTCAACACCCCT 1710
Query 1738 CCTGGATCAACTATACACATCAAGAAGAACATCCGTGTTTGTGGGGATTGCCATACAGCA 1797
||||||||||| |||||||||||||| |||||||| |||||||||||||||||| |||||
Sbjct 1711 CCTGGATCAACCATACACATCAAGAAAAACATCCGGGTTTGTGGGGATTGCCATTCAGCA 1770
Query 1798 ATAAAGTTGGCGTCAAAGGTGGTTGGGAGAGAAATCATTGTGAGAGATACTAATCGGTTC 1857
|| |||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||
Sbjct 1771 ATCAAGTTGGCGTCAAAGGCGGTTGGGAGGGAAATCATTGTGAGAGATACAAATCGGTTC 1830
Query 1858 CACCATTTTAAGGATG 1873
|| |||||||||||||
Sbjct 1831 CATCATTTTAAGGATG 1846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75113963140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5