BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24010.1
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479934 jgi|Araly1|479934|fgenesh2_kg.3__2635__AT3G24010.1 1288 0.0
> Ahg479934 jgi|Araly1|479934|fgenesh2_kg.3__2635__AT3G24010.1
Length=904
Score = 1288 bits (697), Expect = 0.0
Identities = 845/913 (93%), Gaps = 23/913 (3%)
Strand=Plus/Plus
Query 5 TATCCATTTTGGGAAACCCTAAATTCCCAAATGTCATTCGCCGAGGAATTTGAAGCTAAT 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TATCCATTTTGCGAAACCCTAAATTCCCAAATGTCATTCGCCGAGGAATTTGAAGCTAAT 60
Query 65 CTTGTTTCGCTGGCCCATGTTTTGCAGAAGAAATATGCTCTCCTGCGCGATTTGGATAAA 124
|||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 61 CTTGTTTCGCTGGCTCATGTTTTGCAGAAGAAATATGCTCTCCTCCGTGATTTGGATAAA 120
Query 125 AGTTTGCAAGAAAACCAACGACAAAATGAACAACGCTGTGAAAAAGAAATAGAGGATATA 184
|||||||||||||| ||| |||||||||||||||| |||||||| |||||||| ||||||
Sbjct 121 AGTTTGCAAGAAAATCAAAGACAAAATGAACAACGATGTGAAAAGGAAATAGATGATATA 180
Query 185 AGAAGGGGCAGAGCTGGAAATATCACACCTAATACCTCTCTTACAAAGTTCTCAGAGGAA 244
|||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 181 AGAAAGGGCAGAGCTGGAAATATCACACCCAATACCTCTCTTACACAGTTCTCAGAGGAA 240
Query 245 GCACTTGATGAACAGAAACACAGTGTCCGGATTGCTGACGAGAAAGTCACACTGGCTATG 304
||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||
Sbjct 241 GCACTTGATGAACAGAAACACAGCGTCCGGATCGCTGACGAGAAAGTCGCACTGGCTATG 300
Query 305 CAGGCATATGATCTGGTGGATATGCATGTTCAGCAACTTGACCAGTATATGAAAAAATCC 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAGGCATATGATCTGGTGGATATGCATGTTCAGCAACTTGACCAGTATATGAAAAAATCC 360
Query 365 GACGAA-GTGATCCGCAA-AGAGAAAGAAGCTGCCGCTGC-GACATTAGAACTGGAGAAC 421
|| ||| | | | | | ||||||||| ||||| ||||| | |||||||||||||||||
Sbjct 361 GAGGAACG-GTTTCT-ATCAGAGAAAGAGGCTGCTGCTGCTG-CATTAGAACTGGAGAAC 417
Query 422 AACGGGAAAGCCGGGAATGCTGGTGAAGGTGGAAGAGGAGGGCGAAAAAAGACAAGGCTA 481
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 418 AACGGGAAAGCCGGGAATGCTGGTGAAGGTGGAAGAGGAGGGCGAAAGAAGACAAGGCTA 477
Query 482 GCAACAGCAGCGTCAACAGCAGCAGCATCAACTGGGATGACTTCAAGTAATATGGATCTG 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 478 GCAACAGCAGCGTCAACAGCAGCAGCATCAACTGGGATGACTTCAAGTAATATGGATTTG 537
Query 542 GATCTGCCTGTGGATCCAAACGAACCAACTTACTGCATCTGCAACCAAGTTAGCTTTGGC 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 538 GATCTGCCTGTGGATCCAAACGAACCAACTTACTGCATCTGCAACCAAGTTAGCTATGGC 597
Query 602 GAGATGGTTGCGTGTGACAACAATGCGTGCAAGATTGAGTGGTTCCATTTCGGTTGCGTC 661
||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||
Sbjct 598 GAGATGGTTGCGTGTGATAACAATGAGTGCAAGATTGAGTGGTTCCATTTCGGTTGTGTC 657
Query 662 GGTCTGAAAGAACAACCCAAGGGGAAATGGTACTGCCCGGAGTGTGCTACAGT-AAAGAA 720
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||
Sbjct 658 GGTCTGAAAGAACAACCCAAGGGGAAATGGTACTGCCCGGAATGTGCTACAGTCAAA-AA 716
Query 721 GAGCAGGAAAGGTCGATGATTTGAATGTTCATGTCTGCTAATAATCCAAACAGCTTCATC 780
|||||||||||||||||||||| ||| |||| |||||||| ||||||||||| ||||||
Sbjct 717 GAGCAGGAAAGGTCGATGATTTCAATCTTCACGTCTGCTA-TAATCCAAACAACTTCAT- 774
Query 781 ATATCTACTGTAATCCAAACAGTTTAGTATATCAA-CTCATGTAAGATGTTACCATGTTG 839
|| ||||| ||||||||||||||||||||||||| | ||||| ||||||| |||| ||
Sbjct 775 AT--CTACTATAATCCAAACAGTTTAGTATATCAAAC-CATGTCAGATGTTGCCATATTA 831
Query 840 ACTATAAATTGTAGAAGTCTTGTTTCGTTCTT----T-----GTTTGACAAAATTAATAA 890
||||| ||||||||| |||||||| |||||| | ||||||||||||||||||
Sbjct 832 ACTATGGATTGTAGAAATCTTGTTTTGTTCTTAAGCTCTTTTGTTTGACAAAATTAATAA 891
Query 891 CTGAGTTTGGGGT 903
||| | ||||||
Sbjct 892 ATGACTCTGGGGT 904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33471921126
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5