BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24020.1
Length=919
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479933 jgi|Araly1|479933|fgenesh2_kg.3__2634__AT3G24020.1 1116 0.0
Ahg947071 jgi|Araly1|947071|scaffold_703300.1 638 0.0
> Ahg479933 jgi|Araly1|479933|fgenesh2_kg.3__2634__AT3G24020.1
Length=784
Score = 1116 bits (604), Expect = 0.0
Identities = 690/733 (94%), Gaps = 0/733 (0%)
Strand=Plus/Plus
Query 90 ATGATGATCAAGCAATCACCATTCTTGCTTTTAACAACAATCTTGTTCACGGTTGCTGTG 149
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1 ATGATGATCAAGCAATCACCATTCTTGCTTTTAACTGTAATCTTGTTCACAATTGCTGTG 60
Query 150 TTTGTAGCAGCGCTTGATCCTGCACCTGAAGACCCCATTTTCGAACTCTACATGCACGAT 209
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 TTTGTAGCAGCACTTGATCCTGCACCTGAAGACCCCATTTTCGAACTCTACATGCATGAT 120
Query 210 TTACTTGGAGGAAGCAGCCCCACCGCGAGGCCCATCACGGGTTTGCTCGGGAACATTTAC 269
|||||||||||||| |||||||| || ||||| ||||| ||||||||||| |||||||||
Sbjct 121 TTACTTGGAGGAAGTAGCCCCACGGCAAGGCCGATCACAGGTTTGCTCGGCAACATTTAC 180
Query 270 AACGGTCAAGTTCCATTTGCTAAGCAGATTGGTTTCACTCCTCCTGAGAACGGTATAGCC 329
|||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 181 AACGGTCAAGTTCCGTTTGCTAAGCAGATTGGTTTCACTCCTCCCCAAAACGGTATAGCC 240
Query 330 ATACCCAATGCAAACGGCGCACTACCAACGGTTAACGGCATCAATGGTGTACCTCTTGGG 389
||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 241 ATACCAAATGCAAACGGCGCACTCCCAACGGTTAACGGCATCAACGGTGTACCTCTTGGG 300
Query 390 ACCGGCTTGTCTGGTACAGCATACTCTGGTCAGAACCTAAACGGAATTCAGACTCAGTTG 449
|| ||||||||||||||||| |||||||| |||||||| || || |||||||||||||||
Sbjct 301 ACAGGCTTGTCTGGTACAGCCTACTCTGGGCAGAACCTGAATGGGATTCAGACTCAGTTG 360
Query 450 GGTCCTGATGGTCTCAGTCTCGGGTTTGGTACCATTACTGTGATCGACGATATACTCACA 509
|||||||||||| | ||||| ||||||||||||||||| |||||||| || |||||||||
Sbjct 361 GGTCCTGATGGTTTGAGTCTTGGGTTTGGTACCATTACCGTGATCGATGACATACTCACA 420
Query 510 TCTGGTCCTGACTTGGGTTCACAGCCACTTGGTAAGGCTCAAGGAGTTTATGTTGCAAGT 569
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 421 TCTGGTCCTGACTTGGGTTCGCAGCCGCTTGGTAAGGCTCAAGGAGTTTATGTTGCAAGT 480
Query 570 TCTGCAGATGGAAGCACACAGATGATGGCTTTCACAGCTATGCTTGAAGGAGGAGAGTAC 629
|||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||
Sbjct 481 TCTGCAGATGGAAGCACACAGATGATGGCTTTCACAGCTATGTTTGAAGGTGGCGAGTAC 540
Query 630 AACGACAACCTTAACTTCTACGGAATTTACAGGATCGGAAGCGCCATGTCGCATCTATCA 689
|| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 541 AATGACAACCTCAACTTCTACGGAATTTACAGGATCGGAAGTGCCATGTCGCATCTATCA 600
Query 690 GTGACTGGAGGAACAGGTAGGTTCAAGAACGCTTGTGGGTTTGCAGAGGTCAGACCATTG 749
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTGACTGGGGGAACAGGTAGGTTCAAGAACGCTTGTGGGTTTGCAGAGGTCAGACCATTG 660
Query 750 ATTCCATCAGGTCAGCATGAAGTGGATGGAGCAGAGTCTTTGCTTAGGATCATTGTCCAT 809
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 661 ATTCCATCAGGTCAGCATGTAGTGGATGGAGCAGAGTCTTTGCTGAGGATCATTGTCCAT 720
Query 810 CTGAAGTACTAAA 822
|||||||||||||
Sbjct 721 CTGAAGTACTAAA 733
> Ahg947071 jgi|Araly1|947071|scaffold_703300.1
Length=778
Score = 638 bits (345), Expect = 0.0
Identities = 614/743 (83%), Gaps = 22/743 (3%)
Strand=Plus/Plus
Query 86 CTCC-ATGATGATCAAGCAATCACCATTCTTGCTTTTAACAACAATCTTGT-TCACGGTT 143
|||| || ||||| || |||||||||| || |||| |||| ||||||| | ||| |||
Sbjct 16 CTCCAAT-ATGATGAAACAATCACCATCCTCACTTTCAACATCAATCTT-TCTCATAGTT 73
Query 144 GCTGT-GTT--TGTAGC-A--GCGCTTGATCCTGCACCTGAAGACCCCATTTTCGAACTC 197
||| | || || | | | || || |||||||| || |||||||| ||||||||| |
Sbjct 74 GCTCTATTTACTGCAACAACTGCACTCGATCCTGCGCCCGAAGACCCGATTTTCGAATTG 133
Query 198 TACATGCACGATTTACTTGGAGGAAGCAGCCCCACCGCGAGGCCCATCACGGGTTTGCTC 257
||||||||||| ||||||| ||||| || ||||||||||| || || || ||||||||
Sbjct 134 TACATGCACGACATACTTGGCGGAAGTAGTCCCACCGCGAGACCAATTACTGGTTTGCTT 193
Query 258 GGGAACATTTACAACGGTCAAGTTCCATTTGCTAAGCAGATTGGTTTCACTCCTCCTG-A 316
|| ||||| |||||||||||||| || |||||||||||||| ||||| ||| || | |
Sbjct 194 GGAAACATCTACAACGGTCAAGTACCGTTTGCTAAGCAGATCGGTTTTGTTCCACC-GCA 252
Query 317 GAACGGTATAGCCATACCCAATGCAAACGGCGCACTACCAACGGTTAACGGCATCAATGG 376
|||||| | ||||||||||||||||| || || | ||||||||||| || ||||| ||
Sbjct 253 AAACGGTGTTGCCATACCCAATGCAAATGGGGCTTTGCCAACGGTTAATGGTATCAACGG 312
Query 377 TGTACCTCTT-GGGACCGGCTTGTCTGGTACAGCATACTCTGGTCAGAACCTAAACGGAA 435
| | ||| || || ||||| ||||| ||||| || | ||||||||||| ||||| || |
Sbjct 313 TATTCCT-TTAGGTACCGGTTTGTCCGGTACTGCGTTTTCTGGTCAGAATCTAAATGGGA 371
Query 436 TTCAGACTCAGTTGGGTCCTGATGGTCTCAGTCTCGGGTTTGGTACCATTACTGTGATCG 495
||||||| |||||||||||||||||||| ||||| |||||||| || || || ||||| |
Sbjct 372 TTCAGACACAGTTGGGTCCTGATGGTCTGAGTCTTGGGTTTGGAACAATCACGGTGATTG 431
Query 496 ACGATATACTCACATCTGGTCCTGACTTGGGTTCACAGCCACTTGGTAAGGCTCAAGGAG 555
| || ||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 432 ATGACATAATCACATCTGGTCCTGACTTGGGGTCACAGCCACTTGGTAAGGCTCAAGGGG 491
Query 556 TTTATGTTGCAAGTTCTGCAGATGGAAGCACACAGATGATGGCTTTCACAGCTATGCTTG 615
|||||||||| || || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 492 TTTATGTTGCCAGCTCAGCAGATGGAAGCACTCAGATGATGGCTTTCACAGCTATGCTTG 551
Query 616 AAGGAGGAGAGTACAACGACAACCTTAACTTCTACGGAATTTACAGGATCGGAAGCGCCA 675
|||| || |||||||| || || || || ||||| |||||||| ||||||||||||||||
Sbjct 552 AAGGTGGCGAGTACAATGATAATCTAAATTTCTATGGAATTTATAGGATCGGAAGCGCCA 611
Query 676 TGTCGCATCTATCAGTGACTGGAGGAACAGGTAGGTTCAAGAACGCTTGTGGGTTTGCAG 735
|||||||||| || || |||||||||||||| ||||| ||||| ||||| || |||||||
Sbjct 612 TGTCGCATCTGTCTGTTACTGGAGGAACAGGAAGGTTTAAGAATGCTTGCGGATTTGCAG 671
Query 736 AGGTCAGACCATTGATTCCAT-CAGGTCAGCA-TGAAGTGGATGGAGCAGAG-TCTTTGC 792
|||| || || |||||||| | | || || || | || ||||||||||| | || |
Sbjct 672 AGGTTAGGCCGTTGATTCC-TGCGGGCCAACACTTT-GTTGATGGAGCAGAAATGTT-G- 727
Query 793 TT-AGGATCATTGTCCATCTGAA 814
|| ||||||||||||||||||||
Sbjct 728 TTGAGGATCATTGTCCATCTGAA 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34081887798
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5