BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24030.1
Length=1153
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479932 jgi|Araly1|479932|fgenesh2_kg.3__2633__AT3G24030.1 1352 0.0
> Ahg479932 jgi|Araly1|479932|fgenesh2_kg.3__2633__AT3G24030.1
Length=954
Score = 1352 bits (732), Expect = 0.0
Identities = 841/895 (94%), Gaps = 2/895 (0%)
Strand=Plus/Plus
Query 11 GAATGGAATCAAAATCAGAACAAAACGAGTGGAGCTCCGGCGTGTGGGCTCACTTAACCG 70
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 2 GAATGGAATCAAAATCACAGCAAAACGAGTGGAGCTCCGGCGTGTGGGCTCACTTAACCA 61
Query 71 CCGTACGGCA-ACAATCGCCGCTTGTTCAGTGCATCACCAACTTCGTCTCGATGGATCTC 129
|||| ||| | |||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 62 CCGTCCGG-AGACAATCGCCGCTAGTTCAGTGCATCACCAACTTCGTCTCCATGGATCTC 120
Query 130 GTTGCCAACACGCTTTTATCCGCCGGTGCATCTCCAGCGATGGTCCATTCCGTCGTTGAG 189
|| ||||||||||||||| |||||||||||||||| || |||||||||||||||||||||
Sbjct 121 GTCGCCAACACGCTTTTAACCGCCGGTGCATCTCCGGCTATGGTCCATTCCGTCGTTGAG 180
Query 190 ATTCCTGATTTCACTCCTCATATTCACGCGCTCTGCGTCAACGTCGGAACACTTACACCT 249
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 ATTCCTGATTTCACACCTCATATTCACGCGCTCTGCGTCAACGTTGGAACACTTACACCT 240
Query 250 GACTGGCTTCCGTCAATGAAAGCTGCCGCTGAACTCGCTTCTCAGCTCCGAAAGCCTTGG 309
|||||||||||||| |||||||||||||| |||||||||||| ||||| |||||||||||
Sbjct 241 GACTGGCTTCCGTCTATGAAAGCTGCCGCCGAACTCGCTTCTAAGCTCGGAAAGCCTTGG 300
Query 310 GTTCTTGATCCCGCCGCCGTGAGTTGCTCCGGATTCCGATTAAAAGCGTGTTTGGAGCTC 369
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 GTTCTCGATCCCGCCGCCGTGAGTTGCTCCGGATTCCGATTAAAAGCGTGTCTGGAGCTC 360
Query 370 ATCGAGCTAAAACCTACTGTAATCAAAGGAAACGGTTCTGAGATTATTGCTCTCTCCTCT 429
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCGAGCTAAAACCTAGTGTAATCAAAGGAAACGGTTCTGAGATTATTGCTCTCTCCTCT 420
Query 430 GCTTCACGTGGACAAACTAAGGGTGCTGATAGCTCACATGAATCAACAGACGCTATAGAA 489
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 421 GCTTCACGTGGACAAACTAAGGGTGCTGATAGCTCACATGAGTCTACAGACGCTATAGAA 480
Query 490 GCTGCAAAGTCATTAGCGATGTCAAGTGGTGCTGTTGTTGCAGTGTCAGGAGCTGTTGAT 549
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 GCTGCAAAGTCATTAGCTCTGTCAAGTGGTGCTGTTGTTGCAGTGTCCGGAGCTGTTGAT 540
Query 550 ATTGTTACTGATGGGAAACAGGTTATTGGTGTTCACAACGGGACGAAGATGATGCAACAG 609
|| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 541 ATCGTTACGGATGGGAAACAGGTTATTGGGGTTCACAACGGGACGAAGATGATGCAAAAG 600
Query 610 ATTACTGCAACTGGTTGTTCTCTAGCTGGTTTGATTGTAGCGTTTCTTGCTATTGATTCA 669
|| |||||||||||||||||||| ||||||||| ||| ||||||||| ||||||||||||
Sbjct 601 ATCACTGCAACTGGTTGTTCTCTTGCTGGTTTGGTTGCAGCGTTTCTCGCTATTGATTCA 660
Query 670 TCACGGGTACTGGAAGCTACGGTTTCCGCTATGGCTGTCTTTGGCATTGCAGGTGAGTTG 729
|||||||| ||| ||||||| |||||||||||| | |||||||| || || |||||||||
Sbjct 661 TCACGGGTGCTGCAAGCTACAGTTTCCGCTATGTCGGTCTTTGGTATCGCTGGTGAGTTG 720
Query 730 GGTGAAGCGATGGCGAATGGTCCAGCGTCATTGAGAATGCATTTGATAGATTGTCTTTAT 789
|||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||
Sbjct 721 GGTGAAGCGATGGCGAATGGTCCAGCTTCGTTGAGAATGCATTTGATAGATTCTCTTTAT 780
Query 790 GGGTTGGATGAAACCACAGTGCTTAAACGTGTGAATGTGACCAGGTTGGGTTGATGTACA 849
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GGGTTGGATGAAAGTACAGTGCTTAAACGTGTGAATGTGACCAGGTTGGGTTGATGTACA 840
Query 850 TGAATCATCTTCTTTGAATAAAGTTTCTTAAGATATCTCTGCAATTTTCTTGATC 904
|||||| | ||||| ||||||||||||||||||||||||||||| | |||||||
Sbjct 841 TGAATCTTTTTCTTGGAATAAAGTTTCTTAAGATATCTCTGCAACGTCCTTGATC 895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43002650376
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5