BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24040.1
Length=1573
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479931 jgi|Araly1|479931|fgenesh2_kg.3__2632__AT3G24040.1 2194 0.0
> Ahg479931 jgi|Araly1|479931|fgenesh2_kg.3__2632__AT3G24040.1
Length=1544
Score = 2194 bits (1188), Expect = 0.0
Identities = 1454/1576 (92%), Gaps = 44/1576 (3%)
Strand=Plus/Plus
Query 8 ACTGTGACCATTACATACTACAGTTAGCTTTCTTCTCTAGCCGTCGAAGTTTCACGCGCC 67
|||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||
Sbjct 1 ACTGTGACCATTACATACAACCGTTAGCTTTCTTCTCTAGCCGTCG-AGTTTCACGCGCC 59
Query 68 GCCGTGAGAAAATGCAGCACA-CACCGGAGCAACCGAGAGTCACTCTTTACATAATCCTC 126
||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 60 GCCGTGAGAAAATGCAG-AAAGGACCGGAGCAACCGAGAGTCACTCTTTACATAATCCTC 118
Query 127 ACCACCGCGTTtctctctctatgtttcctcctctctctc-tcttcctcttcccagtactc 185
|||||||| ||||||||||| |||||||||||||||||| || ||||||| || ||||
Sbjct 119 ACCACCGCTTTTCTCTCTCTTTGTTTCCTCCTCTCTCTCTTC-TCCTCTT--CA-CACTC 174
Query 186 ttcatcttcctACACCGGACGACCCGATGATCTACGACCCGACCCGAGACTCTTTCCTTC 245
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 175 TTCATCTTCATACACCGGACGACCCGAAGATCTACGACCCGACCCGAGACTCTTTCCTTC 234
Query 246 TTCCTCCAAAATCGCCGCCGATACAGCTCCTCCTTCAATCGCTTACCTAATTTCCGGATC 305
|| ||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 235 CTCATCCAAAATCGCCGCCGATACAGCTCCTCCTTCAATTGCTTACCTTATCTCCGGATC 294
Query 306 TTCTGGTGACACGCGACGAATCCTTCGACTTCTCTACGCTACTTACCATCCTCGAAATCG 365
||| |||||| || |||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 295 TTCCGGTGACTCGAGACGGATCCTTCGTCTTCTCTACGCTACTTACCATCCTCGGAATCG 354
Query 366 ATATCTTCTTCATCTCGATAGCTTAGCGACACAATCTGAACGAGATCGGCTCGCTGTTGA 425
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 355 ATATCTTCTCCATCTCGATAGCTTAGCGACACAATCCGAACGAGATCGGCTCGCTGTTGC 414
Query 426 TGTACAAGATGTACCGATTTTTAGAGCTGCAAGGAATGTTGATGTTATTGGGAAGCCTGA 485
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TGTACAAGATGTACCGATCTTTAGAGCTGCAAGGAATGTTGATGTTATTGGGAAGCCTGA 474
Query 486 TTTCGCGTATCAGAGAGGATCGTCTCCGATGGCTTCTACGCTTCATGGTGCTTCGATTCT 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TTTCGCGTATCAGAGAGGATCGTCTCCGATGGCTTCTACGCTTCATGGTGCTTCGATTCT 534
Query 546 TCTTAGATTGTCAGGAACTTGGGATTGGTTTGTTAGTATTAGTGTTGATGATTATCCTCT 605
|||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||
Sbjct 535 TCTTAGATTGTCAGGAGCTTGGGATTGGTTTGTTAATCTTAGTGTTGATGATTATCCTCT 594
Query 606 CGTTACTCAAGATGAGCTTCTTCATATTATGTCACATTTGCCTAAGGACTTGAATTTTGT 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 CGTTACTCAAGATGAGCTTCTTCATATTATGTCACATTTGCCTAAGGACTTGAATTTTGT 654
Query 666 GAACCACACTAGCTACATTGGTTGGAAAGAGTCCAGGAAGTTGAAGCCAGTTATTGTTGA 725
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 655 GAACCACACTAGCTACATTGGCTGGAAAGAGTCCAGGAGGTTGAAGCCAGTTATTGTTGA 714
Query 726 TCCAGGGCTCTATCTTGTGGAGAAAACCGATATGTTTTTCGCTTCGCAGAAACGAGAGTT 785
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 715 TCCAGGGCTATATCTTGTGGAGAAAACCGATATGTTTTTCGCTTCACAGAAACGAGAGTT 774
Query 786 GCCTAAGGCTTTCAAGTTATTCTCAGGTCCATCTTTCTCCATCTTAAGCCGGAATTTCAT 845
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 775 GCCTAAGGCTTTCAAGTTATTCTCAGGTCCATCTTTCTCCATCTTAAGCCGTAATTTCAT 834
Query 846 GGAGCACTGTGTCTTAGGCACTGACAACTTCCCTCGGACTCTACTCATGTACTTGTCCAA 905
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 835 GGAGCACTGTGTCTTAGGCACTGACAACTTCCCTCGGACTTTACTCATGTACTTGTCCAA 894
Query 906 CACACCTGATTCTCTTTCCAACTACTTCCCAACTATCCTCTGCAACACGGATACCTTCAA 965
|||||||||||| || |||||||||||||| ||||||||||||||| || ||| ||| ||
Sbjct 895 CACACCTGATTCCCTCTCCAACTACTTCCCTACTATCCTCTGCAACTCGAATATCTTTAA 954
Query 966 AAAGACCATCATGAACAACAACTTACTCTACCTAGCTTCTAACGACACTTCTAAAGAAAG 1025
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 AAAGACCATCATCAACAACAACTTACTCTACCTAGCTTCTAACGACACTTCTAAAGAAAA 1014
Query 1026 ATACCATCAGCTTGATCACAAAGAGTTCACAGAAATGGTTGACTCCGGAGCAGCTTTTGC 1085
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1015 ATACCATCAGCTTGATCACAAAGAGTTCACAGAAATGGTTGAATCCGGAGCAGCATTTGC 1074
Query 1086 AAGAGGATTCAGGTACGACGACACTGTCCTTGATCGCATCGATCATGAACTTCTGGGACG 1145
|||||||||||||| ||| ||| || ||||||||||||||||||||||||||||||||||
Sbjct 1075 AAGAGGATTCAGGTTCGATGACCCTATCCTTGATCGCATCGATCATGAACTTCTGGGACG 1134
Query 1146 CAAACCTGGTGAAGTTGTGCCTGGTGGTTGGTGTTTAGGAGATTCTAGTAAAAACCGTAG 1205
|| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1135 CAGACCTGGTGAAGCTGTGCCTGGTGGTTGGTGTTTAGGAGATTCTGGTAAAAACCGCAG 1194
Query 1206 CTCGTGTTCCGTCTGGGGTGACTCGGGTATCCTTCGGCCCGGTTCTGGTTCCGATAGGCT 1265
||||||||| |||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct 1195 CTCGTGTTCTGTCTGGGGTGACTCGGGTATTCTAAGACCCGGTTCTGGTTCCGATAGGCT 1254
Query 1266 CGAGAGACGAATTGTTGAGTTACTATCAAACGATTGGTTCAGATTGCACCAATGCGTACC 1325
|||||||||||| |||||| || ||||||||||||||||||||| |||||||||| |
Sbjct 1255 CGAGAGACGAATAGTTGAGCTATTATCAAACGATTGGTTCAGATCGCACCAATGC--A-- 1310
Query 1326 TGAATGATCGGATGATCCTCACCGCACTTTCAATAGAGTAAATAGTTGTCCAAGACACGA 1385
| | | || ||||||| | | | | ||||| |||||| ||||| |||||
Sbjct 1311 T-A-TC--CGAATGATCC--A----A-T---A---GAGTACATAGTTTTCCAA--CACGA 1351
Query 1386 AGAAGATAACGGTACTT-TATGCTTCTGTATCTTTAGAGAGAGTTCCACTTCTACATTGT 1444
|||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1352 AGAAGATAACGGTAATTCTATGCTTCTGTATCTTTAGAGAGAGTTCCACTTCCACATTGT 1411
Query 1445 AACCTGTGACTTTGAGAGTGTTTGTTCCATTGTTGTTGTAGAAAAACCATCTCAAAGCTG 1504
|| || |||||||||||||||||||||||||||||| ||||| | ||||||||||
Sbjct 1412 AATCTATGACTTTGAGAGTGTTTGTTCCATTGTTGTAAAAGAAA--C-ATCTCAAAGCAA 1468
Query 1505 AGAAATGAAACGACTCGGTTCATTGGTT------G--AA-GTCTAAACCGGTATAAAATC 1555
|||||||||||||||||||||||| || | || |||| |||||||||||||||
Sbjct 1469 AGAAATGAAACGACTCGGTTCATTAATTTATTTAGTTAAAGTCTTAACCGGTATAAAATC 1528
Query 1556 CCGGTTTTAATCTAAT 1571
|||||||| |||||||
Sbjct 1529 CCGGTTTTTATCTAAT 1544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58925609015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5