BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24050.1
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479930 jgi|Araly1|479930|fgenesh2_kg.3__2631__AT3G24050.1 1208 0.0
> Ahg479930 jgi|Araly1|479930|fgenesh2_kg.3__2631__AT3G24050.1
Length=1068
Score = 1208 bits (654), Expect = 0.0
Identities = 991/1137 (87%), Gaps = 90/1137 (8%)
Strand=Plus/Plus
Query 112 AAAACTTCTTCTGGTTCCTTTTATCAACATTTTTTCTCTCTCTTAAAACTTCGAAGCGAT 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAACTTCTTCTGGTTCCTTTTATCAACATTTTTTCTCTCTCTTAAAACTTCGAAGCGAT 60
Query 172 TTTTGA--TTTAC--AGACTATGGAAATGGAATCATTCATGGACGACCTTTTGAACTTCT 227
|||||| ||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTTGATTTTTTCTTA-ACTATGGAAATGGAATCATTCATGGACGACCTTTTGAACTTCT 119
Query 228 CTGTACCGGAAGAGGAAGAAGACGACGACGAACATACGCAACCACCGAGGAATATTACTC 287
||||||||||||| |||||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct 120 CTGTACCGGAAGAAGAAGAAGACGACGAAGAAAATACTCAACCACCGAGGAATATTACTC 179
Query 288 GCCGGAAAACTGGATTACGGCCAACAGACTCCTTCGGTCTCTTTAATACCGACGACCTTG 347
|||||||||||||| |||||| ||| || |||||||| |||||||||||||| |||||||
Sbjct 180 GCCGGAAAACTGGAATACGGCAAACGGATTCCTTCGGCCTCTTTAATACCGATGACCTTG 239
Query 348 GAGTGGTTGAAGAAGAGGATTTGGAATGGATTTCAAACAAAAATGCTTTTCCGGTGATTG 407
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAGTGGTTGAGGAAGAGGATTTGGAATGGATTTCAAACAAAAATGCTTTTCCGGTGATTG 299
Query 408 AAACATTCGTCGGTGTATTACCGTCGGAGCATTTTCCTATAACGTCTCTTCTGGAAAGAG 467
||||||||||||| |||||| | | | | | | | || | ||| ||||
Sbjct 300 AAACATTCGTCGGCGTATTA-C--C---G--------T-TGA-G--TC--C-GGAGAGAG 338
Query 468 AAGCGACTGAGGTAAAACAGCTGAGTCCGGTTTCAGTACTTGAGACGAGTAGCCATAGCT 527
|||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 339 AAGCGACTGAGGGAAAACAGTTGAGTCCGGTTTCAGTACTCGAGACGAGTAGCCATAGCT 398
Query 528 C-----C-AC-A--ACGACTACCTCAAACAGTAGCGGCGGAAGTAACGGAAGCACGGCCG 578
| | || | |||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 399 CTATAACGACGACGGCGACGACCTCAAACAGCAGCGGCGGAAGTAACGGAAGCACGGCTG 458
Query 579 TGGCTACGA--CC-ACCACCACTCCAACAATAATGAGCTGTTGCGTTGGTTTTAAAGCGC 635
|||| || | || || ||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 459 TGGCCACCACCCCTACAACCACCCCAACGATAATGAGCTGCTGCGTTGGTTTTAAAGCGC 518
Query 636 CGGCTAAAGCGAGAAGCAAGCGTCGTCGTACAGGACGCCGTGATTTACGAGTTTTGTGGA 695
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 519 CGGCTAAAGCGAGAAGCAAGCGTCGTCGTACAGGACGCCGTGATTTAGGAGTTTTGTGGA 578
Query 696 CAGGAAACGAGCAAGGAGGAATACAGAAGAAGAAGACGATGACTGT-G-G-CGGCGGCTG 752
|||||||||||||||||||||||||||||||||||||| | | || | | ||||||| |
Sbjct 579 CAGGAAACGAGCAAGGAGGAATACAGAAGAAGAAGACGCCGTCAGTTGCGGCGGCGGCGG 638
Query 753 CGTTGATTATGGGAAGGAAGTGTCAACACTGTGGAGCGGAGAAGACTCCGCAATGGAGGG 812
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 639 CGATGATTATGGGAAGGAAGTGTCAACACTGTGGAGCGGAGAAGACGCCGCAATGGAGGG 698
Query 813 CAGGACCAGCGGGGCCTAAGACTCTGTGTAACGCTTGTGGCGTGAGGTATAAGTCCGGGA 872
| ||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 699 CGGGACCAGCGGGACCGAAGACTCTGTGTAACGCTTGTGGCGTGAGGTATAAGTCTGGGA 758
Query 873 GGCTAGTTCCGGAGTATCGTCCAGCGAACAGTCCAACTTTCACGGCGGAGTTACATTCGA 932
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 759 GGCTAGTTCCGGAGTATCGTCCGGCGAACAGTCCAACTTTCACGGCGGAATTACATTCGA 818
Query 933 ATTCTCACCGGAAGATTGTAGAGATGAGGAAGCAGTATCAGTCCGGTGACGGTGACGGTG 992
|||||||||||||||||||||||||||||||||||||| |||||||||||| | ||
Sbjct 819 ATTCTCACCGGAAGATTGTAGAGATGAGGAAGCAGTATGAGTCCGGTGACG----C--TG 872
Query 993 ATCGGAAAGATTGTGGATAAAAAGTGATTAGGATTAAtttttattttttcggagaaactt 1052
|||||||||||||||||||||| | || || ||||||||||
Sbjct 873 ATCGGAAAGATTGTGGATAAAA--T--TT----TT---------------GGAGAAACTT 909
Query 1053 tttttttttt--tttttcgtttaatttctctttatttgtttttaaagtctgttttagggt 1110
|||||| || |||||| |||| ||| | | |||||||| || |||||||||||
Sbjct 910 TTTTTTCGTTAATTTTTC-TTTA-TTTGT-T------GTTTTTAA-GTTTGTTTTAGGGT 959
Query 1111 tttgcagttggaatttaggtttttaattttttgcttatcttttttatttgTGAAATTAGT 1170
|||||||||||||||||||||||| || ||| | || |||| | || ||||||||||
Sbjct 960 TTTGCAGTTGGAATTTAGGTTTTT--TTATTT--T-AT-TTTTGT-TT-GTGAAATTAGA 1011
Query 1171 GGTAATTACTTATTTAGGGAATATTATGGTCATGGAATGGAAGATAACTTTCTCATT 1227
|||||||||||| |||||| || ||||||| | ||||||||||||||||||||||||
Sbjct 1012 GGTAATTACTTAATTAGGGGATGTTATGGTAAGGGAATGGAAGATAACTTTCTCATT 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45823746234
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5