BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24060.1
Length=444
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930491 jgi|Araly1|930491|scaffold_302948.1 721 0.0
Ahg331219 jgi|Araly1|331219|fgenesh1_pm.C_scaffold_8000562 560 3e-159
> Ahg930491 jgi|Araly1|930491|scaffold_302948.1
Length=485
Score = 721 bits (390), Expect = 0.0
Identities = 427/445 (96%), Gaps = 2/445 (0%)
Strand=Plus/Plus
Query 1 ATGAACACTCGAAAAACAATCATTCTTCTTCTGTTTATGCTTATCGCCATCTCCTTAACG 60
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 21 ATGAACACTCCAAAAACAATCATTCTTCTTCTGCTTATGCTTATCGCCATCTCCTTAACG 80
Query 61 ATCATCTTCACGTTGATGCTTCAGCCACAAACTATGTTTCTAGGAGAAGAATTCGACGTG 120
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 81 ATCATCTTCACGTTGATACTTCAACCACAAACTATGTTTCTAGGAGAAGAATTCGACGTG 140
Query 121 CGTGTGATCAACAGCTTCAGAGACAACTCTTCTCTCCCTCTAGTTATCTGGTGCACTTCG 180
||||||||||||||||||||||||||||| || ||||||||||| || ||||||||||||
Sbjct 141 CGTGTGATCAACAGCTTCAGAGACAACTCGTCCCTCCCTCTAGTGATTTGGTGCACTTCG 200
Query 181 CCGCAAGGAGATCTCGGTGGTCGTGCGCTTCAAGAAGGTGATGACTTCGAATGGACGGCC 240
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 201 CCGCAAGGAGATCTCGGTGGTCGTGCGCTTCAAGAAGGAGACGACTTCGAATGGACGGCC 260
Query 241 AAGATCGATTTGTGGTCATGGATGGCAGAGTACACATGTACAATGAAGTGGGATTCAAAG 300
||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 261 AAGATCGATTTGTGGTCGTGGATGGCAGAGTACACATGTACAATGAAATGGAATTCGAAG 320
Query 301 AGGAAACA-GTTCGAGGCGTTTAAGGTTTCTAGAGACAGCAATAGATGTGGATCTACTAA 359
||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 AGG-AAGAGGTTCGAGGCGTTTAAGGTTTCTAGAGACAGCAATAGATGTGGATCTACTAA 379
Query 360 GAAGTGTTCTTGGTCCGTTAGAGAAGATGGATTTTATTTTAGTAGTGATGAGGTTTATTG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 GAAGTGTTCTTGGTCCGTTAGAGAAGATGGATTTTATTTTAGTAGTGATGAGGTTTATTG 439
Query 420 GACCAAGGATTTTTCTTGGTTATAA 444
|||||| ||||||||||||||||||
Sbjct 440 GACCAAAGATTTTTCTTGGTTATAA 464
> Ahg331219 jgi|Araly1|331219|fgenesh1_pm.C_scaffold_8000562
Length=402
Score = 560 bits (303), Expect = 3e-159
Identities = 375/409 (92%), Gaps = 8/409 (2%)
Strand=Plus/Plus
Query 37 ATGCTTATCGCCATCTCCTTAACGATCATCTTCACGTTGATGCTTCAGCCACAAACTATG 96
|||||||| || ||||||||| ||||| ||||||| |||||||| ||||||||||||
Sbjct 1 ATGCTTATTATCACCTCCTTAACAATCATGATCACGTTAATGCTTCAACCACAAACTATG 60
Query 97 TTTCTAGGAGAAGAATTCGACGTGCGTGTGATCAACAGCTTCAGAGACAACTCTTCTCTC 156
|| || ||||| |||| |||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 61 TTACTTGGAGAGGAATACGACGTGCGTGTGATCAACAACTTCAGAGACAACTCGTCTCTC 120
Query 157 CCTCTAGTTATCTGGTGCACTTCGCCGCAAGGAGATCTCGGTGGTCGTGCGCTTCAAGAA 216
|||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 121 CCTCTAGTGATCTGGTGCACTTCGCCCCAAGGAGATCTCGGTGGTCGTGCACTTCAAGAA 180
Query 217 GGTGATGACTTCGAATGGACGGCCAAGATCGATTTGTGGTCATGGATGGCAGAGTACACA 276
|| || |||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 181 GGAGACGACTTCGAATGGACGGTCAAGATCGATTTGTGGTC------GGCAGAGTACACA 234
Query 277 TGTACAATGAAGTGGGATTCAAAGAGGAAACA-GTTCGAGGCGTTTAAGGTTTCTAGAGA 335
||||||||||||||| || |||||||| || | |||||||||||||||||||||||||||
Sbjct 235 TGTACAATGAAGTGGAATACAAAGAGG-AAGAGGTTCGAGGCGTTTAAGGTTTCTAGAGA 293
Query 336 CAGCAATAGATGTGGATCTACTAAGAAGTGTTCTTGGTCCGTTAGAGAAGATGGATTTTA 395
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 294 CAGCAATAGATGTGGATCTACTAAGAAGTGTTCTTGGTCCGTTAGAGAAGATGGTTTTTA 353
Query 396 TTTTAGTAGTGATGAGGTTTATTGGACCAAGGATTTTTCTTGGTTATAA 444
|||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TTTTAGTAATGATGAGGTTTATTGGACCAAGGATTTTTCTTGGTTATAA 402
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16025347380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5