BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G24065.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value Ahg479928 jgi|Araly1|479928|fgenesh2_kg.3__2629__AT3G24065.1 536 4e-152 Ahg497390 jgi|Araly1|497390|fgenesh2_kg.300__1__AT3G24068.1 357 3e-98 Ahg479927 jgi|Araly1|479927|fgenesh2_kg.3__2628__AT3G24068.1 357 3e-98 > Ahg479928 jgi|Araly1|479928|fgenesh2_kg.3__2629__AT3G24065.1 Length=400 Score = 536 bits (290), Expect = 4e-152 Identities = 366/402 (91%), Gaps = 7/402 (2%) Strand=Plus/Plus Query 1 ATGATATCCACCAAAGCATATAGCCTCTTCCTTGTCTCCTTAGCCTTAGCCTTTACTTCT 60 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct 1 ATGATATCCACCAAAGCATATAGCCTCTTCATTGTCTCCTTAGCCTTAGCCTTTACCTCT 60 Query 61 TCGTTATCTTTCACGGCTCCAGTCTTCACCGTAAAGGTAACCAACAACCTTGCACTTGAC 120 || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct 61 TCATTATCTTTCACGGCTCCAGTCTTCACCGTAAAGATAACCAACAACCTTGCACTTGGC 120 Query 121 TCTCATCCGTTCACCATAAGATGCACCTCGTCCAAATTAGATACTTCGTCTCAGGTGTTA 180 ||| | ||| ||| |||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 121 TCTAAACCGATCATCATAAGCTGCATCTCGTCCAAATTAGATACTTCGTCTCAGGTGTTA 180 Query 181 TTTCGAGGTGAGACTTACGTGCTT-ATGTTTGACACCGACCAATCAACTAGATGGAATTG 239 |||||||||||| ||| | | || |||||| |||| ||||||||| || ||||| ||| Sbjct 181 TTTCGAGGTGAGCCTTTTGGG-TTGATGTTTAACACAGACCAATCAGTTAAATGGAGTTG 239 Query 240 CGTCATCTTCTCATCATCGG---CCAAAATGACTCCTTTCGTCCTCTTTGATCTCGATAG 296 || ||||||||||||||||| |||||| |||| |||||||||||||||||| ||||| Sbjct 240 CGACATCTTCTCATCATCGGGAGCCAAAAAGACTAGTTTCGTCCTCTTTGATCTTGATAG 299 Query 297 AGACAAATCAAGATGCAAACCCGATGGTTCT-TGTCTATGGCAAATCAATCCTGATGGTT 355 ||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| Sbjct 300 AGACAAATCAAGATGCAGACCCGATGGTT-TATGTCTATGGCAAATCAATCCTGATGGTT 358 Query 356 TCTACCTATACGTCGCTTCTATTCATAAATACCAAAAGCAAT 397 |||||||||| |||||||||||||| |||||||||||||||| Sbjct 359 TCTACCTATATGTCGCTTCTATTCAAAAATACCAAAAGCAAT 400 > Ahg497390 jgi|Araly1|497390|fgenesh2_kg.300__1__AT3G24068.1 Length=506 Score = 357 bits (193), Expect = 3e-98 Identities = 350/422 (83%), Gaps = 25/422 (6%) Strand=Plus/Plus Query 1 ATGATATCCACCAAAGCATATAGCCTCTTCCTTGTCTCCTTAGCCTTAGCCTT--T---- 54 ||||||||||||||||||||||| |||||||| |||||||||||||||||||| | Sbjct 10 ATGATATCCACCAAAGCATATAGACTCTTCCTGGTCTCCTTAGCCTTAGCCTTGATCACA 69 Query 55 ACTTCTTCGTTATCTTTCACGGCTCCAGTCTTCACCGTAAAGGTAACCAACAACCTTGCA 114 || ||||||||||||||| |||||| |||||||||| || || ||| ||||| ||||||| Sbjct 70 ACCTCTTCGTTATCTTTCGCGGCTCAAGTCTTCACCATAGAGATAAGCAACACCCTTGCA 129 Query 115 CTTGACTCTCATCCGTTCACCATAAGATGCACCTCG-TCCAAATTAGATACTTCGTCTCA 173 | || |||| |||| || ||||||| |||| |||| ||||| ||| |||| ||| || Sbjct 130 CCTGGCTCTAATCCAATCTCCATAAGCTGCATCTCGCCCCAAA-GAGACACTTGGTC-CA 187 Query 174 -GGTGTTATTTCGAGGTGAGACTTACG-TGCTT-ATGTTTGACACCGACCAATCAACTAG 230 |||||||| |||||||| || || || | || | |||||||| |||||||| || Sbjct 188 CGGTGTTATCTCGAGGTGCGAGTTTCGAT-TTTCA-CTTTGACACAAACCAATCAGTTAA 245 Query 231 ATGGAATTGCGTCATCTTCTCATCATCG-GCCA-AAATGACTCCTTTCGTCCTCTTTGAT 288 ||||| ||||| | | ||||||| | |||| ||| || | ||||||| |||||||| Sbjct 246 ATGGAGTTGCG--A-CATCTCATC-GGGAGCCAGAAA-GAGTAGTTTCGTCATCTTTGAT 300 Query 289 CTCGATAGAGACAAATCAAGATGCAAACCCGATGGTTCT-TGTCTATGGCAAATCAATCC 347 || ||||||||||||||||||||||| ||||||||| | |||||||||||||||||||| Sbjct 301 CTTAATAGAGACAAATCAAGATGCAAAACCGATGGTT-TATGTCTATGGCAAATCAATCC 359 Query 348 TGATGGTTTCTACCTATACGTCGCTTCTATTCATAAATACCAAAAGCAATATAAAT-GGT 406 |||||||||||||||||| |||||||||||||| |||||||||||||||| | ||| ||| Sbjct 360 TGATGGTTTCTACCTATATGTCGCTTCTATTCAAAAATACCAAAAGCAAT-TCAATTGGT 418 Query 407 GA 408 || Sbjct 419 GA 420 > Ahg479927 jgi|Araly1|479927|fgenesh2_kg.3__2628__AT3G24068.1 Length=476 Score = 357 bits (193), Expect = 3e-98 Identities = 350/422 (83%), Gaps = 25/422 (6%) Strand=Plus/Plus Query 1 ATGATATCCACCAAAGCATATAGCCTCTTCCTTGTCTCCTTAGCCTTAGCCTT--T---- 54 ||||||||||||||||||||||| |||||||| |||||||||||||||||||| | Sbjct 10 ATGATATCCACCAAAGCATATAGACTCTTCCTGGTCTCCTTAGCCTTAGCCTTGATCACA 69 Query 55 ACTTCTTCGTTATCTTTCACGGCTCCAGTCTTCACCGTAAAGGTAACCAACAACCTTGCA 114 || ||||||||||||||| |||||| |||||||||| || || ||| ||||| ||||||| Sbjct 70 ACCTCTTCGTTATCTTTCGCGGCTCAAGTCTTCACCATAGAGATAAGCAACACCCTTGCA 129 Query 115 CTTGACTCTCATCCGTTCACCATAAGATGCACCTC-GTCCAAATTAGATACTTCGTCTCA 173 | || |||| |||| || ||||||| |||| ||| ||||| |||||||| |||| | Sbjct 130 CCTGGCTCTAATCCAATCTCCATAAGCTGCATCTCACCCCAAA-GAGATACTTGGTCT-A 187 Query 174 -GGTGTTATTTCGAGGTGAGACTTACG-TGCTT-ATGTTTGACACCGACCAATCAACTAG 230 |||||||| |||||||| || || || | || | |||||||| |||||||| || Sbjct 188 CGGTGTTATCTCGAGGTGGGAGTTTCGAT-TTTCA-CTTTGACACAAACCAATCAGTTAA 245 Query 231 ATGGAATTGCGTCATCTTCTCATCATCG-GCCA-AAATGACTCCTTTCGTCCTCTTTGAT 288 ||||| ||||| | | ||||||| | |||| ||| || | ||||||| |||||||| Sbjct 246 ATGGAGTTGCG--A-CATCTCATC-GGGAGCCAGAAA-GAGTAGTTTCGTCATCTTTGAT 300 Query 289 CTCGATAGAGACAAATCAAGATGCAAACCCGATGGTTCT-TGTCTATGGCAAATCAATCC 347 || ||||||||||||||||||||||| ||||||||| | |||||||||||||||||||| Sbjct 301 CTTAATAGAGACAAATCAAGATGCAAAACCGATGGTT-TATGTCTATGGCAAATCAATCC 359 Query 348 TGATGGTTTCTACCTATACGTCGCTTCTATTCATAAATACCAAAAGCAATATAAAT-GGT 406 |||||||||||||||||| |||||||||||||| |||||||||||||||| | ||| ||| Sbjct 360 TGATGGTTTCTACCTATATGTCGCTTCTATTCAAAAATACCAAAAGCAAT-TCAATTGGT 418 Query 407 GA 408 || Sbjct 419 GA 420 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14651746176 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5