BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24065.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479928 jgi|Araly1|479928|fgenesh2_kg.3__2629__AT3G24065.1 536 4e-152
Ahg497390 jgi|Araly1|497390|fgenesh2_kg.300__1__AT3G24068.1 357 3e-98
Ahg479927 jgi|Araly1|479927|fgenesh2_kg.3__2628__AT3G24068.1 357 3e-98
> Ahg479928 jgi|Araly1|479928|fgenesh2_kg.3__2629__AT3G24065.1
Length=400
Score = 536 bits (290), Expect = 4e-152
Identities = 366/402 (91%), Gaps = 7/402 (2%)
Strand=Plus/Plus
Query 1 ATGATATCCACCAAAGCATATAGCCTCTTCCTTGTCTCCTTAGCCTTAGCCTTTACTTCT 60
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1 ATGATATCCACCAAAGCATATAGCCTCTTCATTGTCTCCTTAGCCTTAGCCTTTACCTCT 60
Query 61 TCGTTATCTTTCACGGCTCCAGTCTTCACCGTAAAGGTAACCAACAACCTTGCACTTGAC 120
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 61 TCATTATCTTTCACGGCTCCAGTCTTCACCGTAAAGATAACCAACAACCTTGCACTTGGC 120
Query 121 TCTCATCCGTTCACCATAAGATGCACCTCGTCCAAATTAGATACTTCGTCTCAGGTGTTA 180
||| | ||| ||| |||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 121 TCTAAACCGATCATCATAAGCTGCATCTCGTCCAAATTAGATACTTCGTCTCAGGTGTTA 180
Query 181 TTTCGAGGTGAGACTTACGTGCTT-ATGTTTGACACCGACCAATCAACTAGATGGAATTG 239
|||||||||||| ||| | | || |||||| |||| ||||||||| || ||||| |||
Sbjct 181 TTTCGAGGTGAGCCTTTTGGG-TTGATGTTTAACACAGACCAATCAGTTAAATGGAGTTG 239
Query 240 CGTCATCTTCTCATCATCGG---CCAAAATGACTCCTTTCGTCCTCTTTGATCTCGATAG 296
|| ||||||||||||||||| |||||| |||| |||||||||||||||||| |||||
Sbjct 240 CGACATCTTCTCATCATCGGGAGCCAAAAAGACTAGTTTCGTCCTCTTTGATCTTGATAG 299
Query 297 AGACAAATCAAGATGCAAACCCGATGGTTCT-TGTCTATGGCAAATCAATCCTGATGGTT 355
||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||
Sbjct 300 AGACAAATCAAGATGCAGACCCGATGGTT-TATGTCTATGGCAAATCAATCCTGATGGTT 358
Query 356 TCTACCTATACGTCGCTTCTATTCATAAATACCAAAAGCAAT 397
|||||||||| |||||||||||||| ||||||||||||||||
Sbjct 359 TCTACCTATATGTCGCTTCTATTCAAAAATACCAAAAGCAAT 400
> Ahg497390 jgi|Araly1|497390|fgenesh2_kg.300__1__AT3G24068.1
Length=506
Score = 357 bits (193), Expect = 3e-98
Identities = 350/422 (83%), Gaps = 25/422 (6%)
Strand=Plus/Plus
Query 1 ATGATATCCACCAAAGCATATAGCCTCTTCCTTGTCTCCTTAGCCTTAGCCTT--T---- 54
||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
Sbjct 10 ATGATATCCACCAAAGCATATAGACTCTTCCTGGTCTCCTTAGCCTTAGCCTTGATCACA 69
Query 55 ACTTCTTCGTTATCTTTCACGGCTCCAGTCTTCACCGTAAAGGTAACCAACAACCTTGCA 114
|| ||||||||||||||| |||||| |||||||||| || || ||| ||||| |||||||
Sbjct 70 ACCTCTTCGTTATCTTTCGCGGCTCAAGTCTTCACCATAGAGATAAGCAACACCCTTGCA 129
Query 115 CTTGACTCTCATCCGTTCACCATAAGATGCACCTCG-TCCAAATTAGATACTTCGTCTCA 173
| || |||| |||| || ||||||| |||| |||| ||||| ||| |||| ||| ||
Sbjct 130 CCTGGCTCTAATCCAATCTCCATAAGCTGCATCTCGCCCCAAA-GAGACACTTGGTC-CA 187
Query 174 -GGTGTTATTTCGAGGTGAGACTTACG-TGCTT-ATGTTTGACACCGACCAATCAACTAG 230
|||||||| |||||||| || || || | || | |||||||| |||||||| ||
Sbjct 188 CGGTGTTATCTCGAGGTGCGAGTTTCGAT-TTTCA-CTTTGACACAAACCAATCAGTTAA 245
Query 231 ATGGAATTGCGTCATCTTCTCATCATCG-GCCA-AAATGACTCCTTTCGTCCTCTTTGAT 288
||||| ||||| | | ||||||| | |||| ||| || | ||||||| ||||||||
Sbjct 246 ATGGAGTTGCG--A-CATCTCATC-GGGAGCCAGAAA-GAGTAGTTTCGTCATCTTTGAT 300
Query 289 CTCGATAGAGACAAATCAAGATGCAAACCCGATGGTTCT-TGTCTATGGCAAATCAATCC 347
|| ||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||
Sbjct 301 CTTAATAGAGACAAATCAAGATGCAAAACCGATGGTT-TATGTCTATGGCAAATCAATCC 359
Query 348 TGATGGTTTCTACCTATACGTCGCTTCTATTCATAAATACCAAAAGCAATATAAAT-GGT 406
|||||||||||||||||| |||||||||||||| |||||||||||||||| | ||| |||
Sbjct 360 TGATGGTTTCTACCTATATGTCGCTTCTATTCAAAAATACCAAAAGCAAT-TCAATTGGT 418
Query 407 GA 408
||
Sbjct 419 GA 420
> Ahg479927 jgi|Araly1|479927|fgenesh2_kg.3__2628__AT3G24068.1
Length=476
Score = 357 bits (193), Expect = 3e-98
Identities = 350/422 (83%), Gaps = 25/422 (6%)
Strand=Plus/Plus
Query 1 ATGATATCCACCAAAGCATATAGCCTCTTCCTTGTCTCCTTAGCCTTAGCCTT--T---- 54
||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
Sbjct 10 ATGATATCCACCAAAGCATATAGACTCTTCCTGGTCTCCTTAGCCTTAGCCTTGATCACA 69
Query 55 ACTTCTTCGTTATCTTTCACGGCTCCAGTCTTCACCGTAAAGGTAACCAACAACCTTGCA 114
|| ||||||||||||||| |||||| |||||||||| || || ||| ||||| |||||||
Sbjct 70 ACCTCTTCGTTATCTTTCGCGGCTCAAGTCTTCACCATAGAGATAAGCAACACCCTTGCA 129
Query 115 CTTGACTCTCATCCGTTCACCATAAGATGCACCTC-GTCCAAATTAGATACTTCGTCTCA 173
| || |||| |||| || ||||||| |||| ||| ||||| |||||||| |||| |
Sbjct 130 CCTGGCTCTAATCCAATCTCCATAAGCTGCATCTCACCCCAAA-GAGATACTTGGTCT-A 187
Query 174 -GGTGTTATTTCGAGGTGAGACTTACG-TGCTT-ATGTTTGACACCGACCAATCAACTAG 230
|||||||| |||||||| || || || | || | |||||||| |||||||| ||
Sbjct 188 CGGTGTTATCTCGAGGTGGGAGTTTCGAT-TTTCA-CTTTGACACAAACCAATCAGTTAA 245
Query 231 ATGGAATTGCGTCATCTTCTCATCATCG-GCCA-AAATGACTCCTTTCGTCCTCTTTGAT 288
||||| ||||| | | ||||||| | |||| ||| || | ||||||| ||||||||
Sbjct 246 ATGGAGTTGCG--A-CATCTCATC-GGGAGCCAGAAA-GAGTAGTTTCGTCATCTTTGAT 300
Query 289 CTCGATAGAGACAAATCAAGATGCAAACCCGATGGTTCT-TGTCTATGGCAAATCAATCC 347
|| ||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||
Sbjct 301 CTTAATAGAGACAAATCAAGATGCAAAACCGATGGTT-TATGTCTATGGCAAATCAATCC 359
Query 348 TGATGGTTTCTACCTATACGTCGCTTCTATTCATAAATACCAAAAGCAATATAAAT-GGT 406
|||||||||||||||||| |||||||||||||| |||||||||||||||| | ||| |||
Sbjct 360 TGATGGTTTCTACCTATATGTCGCTTCTATTCAAAAATACCAAAAGCAAT-TCAATTGGT 418
Query 407 GA 408
||
Sbjct 419 GA 420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14651746176
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5