BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24068.1
Length=486
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497390 jgi|Araly1|497390|fgenesh2_kg.300__1__AT3G24068.1 617 2e-176
Ahg479927 jgi|Araly1|479927|fgenesh2_kg.3__2628__AT3G24068.1 616 6e-176
Ahg479928 jgi|Araly1|479928|fgenesh2_kg.3__2629__AT3G24065.1 398 2e-110
> Ahg497390 jgi|Araly1|497390|fgenesh2_kg.300__1__AT3G24068.1
Length=506
Score = 617 bits (334), Expect = 2e-176
Identities = 438/486 (90%), Gaps = 16/486 (3%)
Strand=Plus/Plus
Query 1 AAACAAAAGATGATATCCACCAAAGCATATAGCCTCTTCCTGG--T-C-T--CCTTAGCC 54
|||||||||||||||||||||||||||||||| |||||||||| | | | ||||||||
Sbjct 1 AAACAAAAGATGATATCCACCAAAGCATATAGACTCTTCCTGGTCTCCTTAGCCTTAGCC 60
Query 55 TT-A--ACGACCTCTTGGTTATCTTTGGCGGCTCCAGTCTTCACCATAAAGATAAGCAAC 111
|| | || ||||||| ||||||||| ||||||| ||||||||||||| |||||||||||
Sbjct 61 TTGATCACAACCTCTTCGTTATCTTTCGCGGCTCAAGTCTTCACCATAGAGATAAGCAAC 120
Query 112 AACCTTGCACCTGGCTCTAATCCGATCTCCATAAGTTGCATCTCGCCACAAAAAGATATT 171
| ||||||||||||||||||||| ||||||||||| ||||||||||| |||| ||| | |
Sbjct 121 ACCCTTGCACCTGGCTCTAATCCAATCTCCATAAGCTGCATCTCGCCCCAAAGAGACACT 180
Query 172 TGGTCTGCTGTTG-TATCTCAAGGT-CAGAGTTCCGAGTTTGGGTTTGACACAAACCGAT 229
||||| | | || |||||| |||| | ||||| ||| ||| ||||||||||||| ||
Sbjct 181 TGGTCCAC-GGTGTTATCTCGAGGTGC-GAGTTTCGATTTTCACTTTGACACAAACCAAT 238
Query 230 CAGTTAAATGGACTTGTGACATCTCATCGGGAGCAAGAAAGAGTAGTTTCGTCATCTTTG 289
|||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 239 CAGTTAAATGGAGTTGCGACATCTCATCGGGAGCCAGAAAGAGTAGTTTCGTCATCTTTG 298
Query 290 ATCTTAATAGAGACAAATCAAGATGCAGATCCGATGGTTTTTGTCTATGGCAAATCAATC 349
||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||
Sbjct 299 ATCTTAATAGAGACAAATCAAGATGCAAAACCGATGGTTTATGTCTATGGCAAATCAATC 358
Query 350 CTGATGGTCTT-TACCTATATGTCGCTTCTATTCAGAAATACCAAAAGCAATTCAATTGG 408
|||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 359 CTGATGGT-TTCTACCTATATGTCGCTTCTATTCAAAAATACCAAAAGCAATTCAATTGG 417
Query 409 TGATACACCAAACAATATGCATTGTGTTATTGTATCGTTCAGTCGTATAATATAATATAA 468
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 418 TGATACACCAAACAATATGCATTGTGTTATTGTATCGTTGAGTCGTATAATATAATATA- 476
Query 469 TTATAA 474
| ||||
Sbjct 477 TAATAA 482
> Ahg479927 jgi|Araly1|479927|fgenesh2_kg.3__2628__AT3G24068.1
Length=476
Score = 616 bits (333), Expect = 6e-176
Identities = 432/478 (90%), Gaps = 13/478 (3%)
Strand=Plus/Plus
Query 1 AAACAAAAGATGATATCCACCAAAGCATATAGCCTCTTCCTGG--T-C-T--CCTTAGCC 54
|||||||||||||||||||||||||||||||| |||||||||| | | | ||||||||
Sbjct 1 AAACAAAAGATGATATCCACCAAAGCATATAGACTCTTCCTGGTCTCCTTAGCCTTAGCC 60
Query 55 TT-A--ACGACCTCTTGGTTATCTTTGGCGGCTCCAGTCTTCACCATAAAGATAAGCAAC 111
|| | || ||||||| ||||||||| ||||||| ||||||||||||| |||||||||||
Sbjct 61 TTGATCACAACCTCTTCGTTATCTTTCGCGGCTCAAGTCTTCACCATAGAGATAAGCAAC 120
Query 112 AACCTTGCACCTGGCTCTAATCCGATCTCCATAAGTTGCATCTCGCCACAAAAAGATATT 171
| ||||||||||||||||||||| ||||||||||| |||||||| || |||| ||||| |
Sbjct 121 ACCCTTGCACCTGGCTCTAATCCAATCTCCATAAGCTGCATCTCACCCCAAAGAGATACT 180
Query 172 TGGTCTGCTGTTG-TATCTCAAGGTCAGAGTTCCGAGTTTGGGTTTGACACAAACCGATC 230
|||||| | | || |||||| |||| ||||| ||| ||| ||||||||||||| |||
Sbjct 181 TGGTCTAC-GGTGTTATCTCGAGGTGGGAGTTTCGATTTTCACTTTGACACAAACCAATC 239
Query 231 AGTTAAATGGACTTGTGACATCTCATCGGGAGCAAGAAAGAGTAGTTTCGTCATCTTTGA 290
||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 AGTTAAATGGAGTTGCGACATCTCATCGGGAGCCAGAAAGAGTAGTTTCGTCATCTTTGA 299
Query 291 TCTTAATAGAGACAAATCAAGATGCAGATCCGATGGTTTTTGTCTATGGCAAATCAATCC 350
|||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||
Sbjct 300 TCTTAATAGAGACAAATCAAGATGCAAAACCGATGGTTTATGTCTATGGCAAATCAATCC 359
Query 351 TGATGGTCTT-TACCTATATGTCGCTTCTATTCAGAAATACCAAAAGCAATTCAATTGGT 409
||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 360 TGATGGT-TTCTACCTATATGTCGCTTCTATTCAAAAATACCAAAAGCAATTCAATTGGT 418
Query 410 GATACACCAAACAATATGCATTGTGTTATTGTATCGTTCAGTCGTATAATATAATATA 467
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 419 GATTCACCAAACAATATGCATTGTGTTATTGTATCGTTGAGTCGTATAATATAATATA 476
> Ahg479928 jgi|Araly1|479928|fgenesh2_kg.3__2629__AT3G24065.1
Length=400
Score = 398 bits (215), Expect = 2e-110
Identities = 346/406 (85%), Gaps = 21/406 (5%)
Strand=Plus/Plus
Query 10 ATGATATCCACCAAAGCATATAGCCTCTTCCTGGTCTCCTTAGCCTTA-AC--GACCTCT 66
|||||||||||||||||||||||||||||| | ||||||||||||||| | ||||||
Sbjct 1 ATGATATCCACCAAAGCATATAGCCTCTTCATTGTCTCCTTAGCCTTAGCCTTTACCTCT 60
Query 67 TGGTTATCTTTGGCGGCTCCAGTCTTCACCATAAAGATAAGCAACAACCTTGCACCTGGC 126
| |||||||| ||||||||||||||||| ||||||||| |||||||||||||| ||||
Sbjct 61 TCATTATCTTTCACGGCTCCAGTCTTCACCGTAAAGATAACCAACAACCTTGCACTTGGC 120
Query 127 TCTAATCCGATC-TCCATAAGTTGCATCTCG-CCACAAAAAGATATTTGGTCTGCTGTTG 184
||||| |||||| | |||||| ||||||||| ||| || ||||| || |||| | | ||
Sbjct 121 TCTAAACCGATCAT-CATAAGCTGCATCTCGTCCA-AATTAGATACTTCGTCT-CAGGTG 177
Query 185 -TATCTCAAGGTCAGAGTTCCGAGTTTG-GGTTTGACACAAACCGATCAGTTAAATGGAC 242
||| || |||| || || | | ||| |||| ||||| ||| ||||||||||||||
Sbjct 178 TTATTTCGAGGTGAGCCTTTTG-GGTTGATGTTTAACACAGACCAATCAGTTAAATGGAG 236
Query 243 TTGTGACA-----TC-TCATCGGGAG-CAAGAAAGAGTAGTTTCGTCATCTTTGATCTTA 295
||| |||| || |||||||||| ||| ||||| |||||||||| |||||||||||
Sbjct 237 TTGCGACATCTTCTCATCATCGGGAGCCAA-AAAGACTAGTTTCGTCCTCTTTGATCTTG 295
Query 296 ATAGAGACAAATCAAGATGCAGATCCGATGGTTTTTGTCTATGGCAAATCAATCCTGATG 355
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 296 ATAGAGACAAATCAAGATGCAGACCCGATGGTTTATGTCTATGGCAAATCAATCCTGATG 355
Query 356 GTCTT-TACCTATATGTCGCTTCTATTCAGAAATACCAAAAGCAAT 400
|| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 356 GT-TTCTACCTATATGTCGCTTCTATTCAAAAATACCAAAAGCAAT 400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17627882118
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5