BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G24070.1

Length=1625
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg916255 jgi|Araly1|916255|Al_scaffold_0008_1006                    399    2e-110


> Ahg916255 jgi|Araly1|916255|Al_scaffold_0008_1006
Length=759

 Score =  399 bits (216),  Expect = 2e-110
 Identities = 339/397 (85%), Gaps = 14/397 (4%)
 Strand=Plus/Plus

Query  459  ATGTGGTTGAAGATTCGTGGGATTCCGATTCAGTATCTTTGTGATGGGACGGTTCGTGAG  518
            |||||||||| ||||||||| |||||||||| |||||||||||| || ||||||||||||
Sbjct  1    ATGTGGTTGAGGATTCGTGGAATTCCGATTCGGTATCTTTGTGAAGGAACGGTTCGTGAG  60

Query  519  ATTGCTTCGTCTATGGGTGAGGTAATGGAAGTTGAATTAGATGATG-GAA-TGGTTGATT  576
            ||||||||||||||||| ||  ||||||| |||||||| ||||||| ||| |  ||||||
Sbjct  61   ATTGCTTCGTCTATGGGGGAAATAATGGAGGTTGAATTGGATGATGTGAAAT--TTGATT  118

Query  577  TGAGTTCTGTGCGTGCTCGTGTGAATGTTTGTGTGGATACACGTTTGTGTTTTAAGAAAG  636
            |  ||| |||||||| ||||||||| |||| ||||||||| |||||||||||||||||||
Sbjct  119  TTCGTTTTGTGCGTGTTCGTGTGAACGTTTCTGTGGATACTCGTTTGTGTTTTAAGAAAG  178

Query  637  TGGCGAGGTTTGATTCTGGAGAGGTTAAGATTGTGAGTTTTAGGTATGAGGATATTGGTA  696
            |||  ||||||| |||||| ||||||| |||||||||||| |||||||||||||||| | 
Sbjct  179  TGGTTAGGTTTGGTTCTGGTGAGGTTAGGATTGTGAGTTTGAGGTATGAGGATATTGCT-  237

Query  697  TG-AGTAAAGCGAGGTTT-AAGTTTTGTTTTAATTGTGG-GGATATGAATCATTTGGCTA  753
            || |||||||  || ||| ||||||| |  ||||||||| || | |||||||| | ||||
Sbjct  238  TGGAGTAAAGTTAG-TTTCAAGTTTTATCGTAATTGTGGTGGTT-TGAATCATCTCGCTA  295

Query  754  GGAATTGTTTGA-TCCCTTGGGTTGATGTTCCTGATCCTTATGAACGTTCTCTTTCACCA  812
            ||  ||||| |  |   ||||||||||||||||||||||||||| ||| |||||||||||
Sbjct  296  GGTCTTGTTCGCGTGT-TTGGGTTGATGTTCCTGATCCTTATGATCGTGCTCTTTCACCA  354

Query  813  CCGCCTCATGAGTCTAAC-TCTGATGGTTCTGCTGAG  848
            ||||||| ||| |||| | | ||||||||||| ||||
Sbjct  355  CCGCCTCTTGATTCTAGCGT-TGATGGTTCTGGTGAG  390



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 60906301755


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5