BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24093.1
Length=1145
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930478 jgi|Araly1|930478|scaffold_302935.1 558 3e-158
Ahg930475 jgi|Araly1|930475|scaffold_302932.1 259 3e-68
> Ahg930478 jgi|Araly1|930478|scaffold_302935.1
Length=899
Score = 558 bits (302), Expect = 3e-158
Identities = 670/838 (80%), Gaps = 64/838 (8%)
Strand=Plus/Plus
Query 188 TAAAACTCCCCAACGA-TTGCTCGCAGAAAGAGTTTAAGCGAGCGTTG-GAGTTCGTGAA 245
||||||||||| || | || ||| | | | |||||| || |||| ||| |||||||||||
Sbjct 59 TAAAACTCCCC-ACTAGTTACTCTCGGGAGGAGTTTGAGAGAGC-TTGCGAGTTCGTGAA 116
Query 246 GAAAGTAAAAGAGATTGATGAAAAAGGAAACCACAGAGGAATCTTC-CTTCGATATACT- 303
|||||||||||||||||||||| || ||||||||||||||||||| | || |||| |
Sbjct 117 GAAAGTAAAAGAGATTGATGAAGAACAAAACCACAGAGGAATCTTCAC-TCAATAT-GTC 174
Query 304 ACTGCAATGAAGCTTTA-CTATTCTGGATCTTTGAGCGA-AGTCGATCTCAAAAACAGAA 361
||||| ||||| ||||| | | ||||||||||||| | | ||||| ||||||||||||
Sbjct 175 ACTGCGATGAAACTTTATCGA-TCTGGATCTTTGAAC-ATGGTCGAGGTCAAAAACAGAA 232
Query 362 TCACGACTATTTTCAAGAACTGCGACGTTTTGCTCGATGCCTTTGATCG-ATTTCTGGAA 420
||||||||||||||||||||||||||||||||||||||| |||| |||| ||| || ||
Sbjct 233 TCACGACTATTTTCAAGAACTGCGACGTTTTGCTCGATGGCTTTTATCGGATTA-TGAAA 291
Query 421 GATTCGAATTCC-AGTTCTCGTCAAAAGGAAGTTTTTGTTGATCCAAAGAATGTTAAACG 479
|||||| ||| | ||||| || | | | | || ||| || || | |||||||
Sbjct 292 GATTCGGATTTGGA-TTCTCTTCGAGACCA--TATT-GTT-ATT----GA-TCTTAAACG 341
Query 480 AATAAAGGAGTTCTTAAAGTCGTTGAG-AA-GAGACTGCGAGGAATTATGTGGAGTGCTT 537
||| |||||||||||| ||||||| || ||| ||| || | ||| || || | ||
Sbjct 342 AATGGTTGAGTTCTTAAAGGCGTTGAGGAAAGAGTCTGAAAG-A-TTACGTCTAGGGTTT 399
Query 538 ATAGAGGCTTTCGTGAGGTTCAAGGAACATAACGATGTG-CAGATTT-TAAAAG-ATGAT 594
|||||||||||||||| |||||||||||||| |||| | || | || | || | | ||
Sbjct 400 TTAGAGGCTTTCGTGAGATTCAAGGAACATAAAGATG-GACA-AGTTCTGAATGGA-GAA 456
Query 595 GTTGACCTAATGTTACGAGATTATCCTCGTCTAAAAGAGGAGTTTAGGATGATCCTACTC 654
|||||||| ||||||||| |||| ||| ||| ||||| || ||||||||||||||||||
Sbjct 457 GTTGACCTGATGTTACGAAATTACCCTTTTCTGAAAGAAGAATTTAGGATGATCCTACTC 516
Query 655 GACCACGGTTTAATACAAGATGAGAAACGAGATGAGATGACGCGTGGG-GAAGAGGACGA 713
|| | ||| || |||||||||| |||||||||||||| ||| || || ||||| ||
Sbjct 517 GAGAATGGTATAGTACAAGATGAAAAACGAGATGAGATTACGTTTGATAGA-GAGGATGA 575
Query 714 GCTGTTC-AAAGATGATATGTACTTTCATGCCATAGAATCGGCCATTAAGTTTGCGGTGG 772
| ||||| ||| | || |||||||||||| | |||||||| || ||||||||||||| ||
Sbjct 576 GATGTTCGAAAAA-GACATGTACTTTCATTCTATAGAATCAGCAATTAAGTTTGCGGCGG 634
Query 773 CGGAGGA---TAAT--GAG-AAGCCG--GA-GGTGGGTGTTTATGGAGCCATTAGACGGT 823
||||||| ||| ||| ||| || | || |||||||||||||||||| |||||||
Sbjct 635 CGGAGGAGGATAAAAAGAGGAAGACGCCGCCGGCGGGTGTTTATGGAGCCATGAGACGGT 694
Query 824 TTTACAAACAACGACGCAGAA-AGTTGCCACGAGGAATCATGAAAGATCCGAAACTTG-G 881
| || |||||| || ||| | |||||||||||| |||||| |||||||||||||| |
Sbjct 695 TATATGCACAACGGCGTAGACCA-TTGCCACGAGGATTCATGAGAGATCCGAAACTTGCG 753
Query 882 AGTTA-GAAGA-ATTTTACCAAATTTGCAGAGGAAGTACAACGAGTTGCTCAAGAACA-G 938
|| | ||||| |||| | ||| ||||||| ||||| ||||||||||||||||||| | |
Sbjct 754 -GT-ACGAAGAGATTT-ATCAACTTTGCAGTGGAAGCACAACGAGTTGCTCAAGAAGAAG 810
Query 939 AACA-AAG----TCGCTTGAGAAAGTGCGAAAAG-TGAATGAATCATTGGTTGTTTTT 990
|||| ||| | |||| ||||||||| ||||| |||||||||||||||||||||||
Sbjct 811 AACAGAAGAAAGTTGCTTAAGAAAGTGC-AAAAGGTGAATGAATCATTGGTTGTTTTT 867
> Ahg930475 jgi|Araly1|930475|scaffold_302932.1
Length=499
Score = 259 bits (140), Expect = 3e-68
Identities = 368/471 (78%), Gaps = 43/471 (9%)
Strand=Plus/Plus
Query 188 TAAAACTCCCCAAC-GATTGCTCGCAGAAAGAGTTTAAGCGAGCGTTG-GAGTTCGTGAA 245
||||||||||| || |||| ||| | | | |||||| || |||| ||| |||||||||||
Sbjct 58 TAAAACTCCCC-ACTGATTACTCTCGGGAGGAGTTTGAGAGAGC-TTGCGAGTTCGTGAA 115
Query 246 GAAAGTAAAAGAGATTGATGAAAAAGGAAACCACAGAGGAATCTTCCTTCGATATACT-A 304
| |||||||||||||||||||| || ||||||||||||||||||| ||| ||||| | |
Sbjct 116 GCAAGTAAAAGAGATTGATGAAGAACAAAACCACAGAGGAATCTTCATTCAATATA-TCA 174
Query 305 CTGCAATGAAGCTTTA-CTATTCTGGATCTTT-GAGCGA-AGTCGATCTCAAAAACAGAA 361
|||||||||||||||| | | ||||||||||| || | | ||||| ||||||||||||
Sbjct 175 CTGCAATGAAGCTTTATCGA-TCTGGATCTTTGGA-C-ATGGTCGAGGTCAAAAACAGAA 231
Query 362 TCACGACTATTTTCAAGAACTGCGACGTTTTGCTCGATGCCTTTGATCG-ATTTCTGGAA 420
||||||| ||||||||||||||||||||||||||||||| |||| || | ||| || ||
Sbjct 232 TCACGACCATTTTCAAGAACTGCGACGTTTTGCTCGATGGCTTTCATAGGATTA-TGAAA 290
Query 421 GATTCGAATTCCAGTTCTCGTCAAAAGGAAGTTTTTGTTGATCCAAAGAATGTTAAACGA 480
|||||| ||| || | || | | | | |||| || | | ||||||
Sbjct 291 GATTCGGATT---GT-C-----AAGACCA--TATC-GTTGTTC-------T-T-AAACGA 329
Query 481 ATAAAGGAGTTCTTAAAGTCGTTGA-GAAGAGACTGCGAG-GAATTATGTGGAGTGCTTA 538
|| || |||||| ||| ||||| ||| ||| | |||| || ||| | || | |||
Sbjct 330 ATGGTGGGGTTCTTGAAGGCGTTGGCGAA-AGAGTCCGAGAGA-TTACGACTAGGG-TTA 386
Query 539 -TAGAGGCTTTCGTGAGGTTCAAGGAACATAACGATGTG-CAGATTTTAAAAGATGATGT 596
| |||||||||||||| |||||||||||||| |||| | ||| || | || || | ||
Sbjct 387 ATGGAGGCTTTCGTGAGATTCAAGGAACATAAAGATG-GACAGGTTCTGAAGGAACAAGT 445
Query 597 TGACCTAATGTTACGAGATTATCCTCGTCTAAAAGAGGAGTTTAGGATGAT 647
|||||| |||||||||||||||||| ||||| |||| || ||||||| |||
Sbjct 446 TGACCTTATGTTACGAGATTATCCTTGTCTATAAGAAGAATTTAGGAGGAT 496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42697667040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5