BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G24100.1

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg930474 jgi|Araly1|930474|scaffold_302931.1                        283    7e-76


> Ahg930474 jgi|Araly1|930474|scaffold_302931.1
Length=493

 Score =  283 bits (153),  Expect = 7e-76
 Identities = 201/223 (90%), Gaps = 8/223 (4%)
 Strand=Plus/Plus

Query  96   AGGAAGTCAAAGAGAGCGTGACCGTGAAAGGGCTCTAGCTCGAACCGGAGGCAAAGGAAA  155
            |||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct  278  AGGAAGCCAAAGAGAGCGTGATCGTGAAAGGGCTCTAGCTCGAACCGGAGGTAAAGGAAA  337

Query  156  GAAC-AAAGATGATGGATTAACTCCTGAGCAACGTCGTGAAAGAGATGCAAAAGCATTGC  214
            | || ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct  338  G-ACTAAAGATGATGGGTTAACTCCAGAGCAACGTCGTGAAAGAGATGCAAAAGCATTGC  396

Query  215  AAGAGAAGACTGCAAAGAAAGCTGCTCAAGCCGCTGCTGCAGCTAGTTCCGGAGGAGGAG  274
            |||||||| |||||||||||||||||||||| || ||||||||||| ||   ||||||||
Sbjct  397  AAGAGAAGGCTGCAAAGAAAGCTGCTCAAGCTGCAGCTGCAGCTAGCTC---AGGAGGAG  453

Query  275  GAGGCAAAGGAAACAATAAGTGAGAAAAAATGATCTATGCTTC  317
            |   ||||||||||||||| |||||||  |||||| ||| |||
Sbjct  454  G---CAAAGGAAACAATAAATGAGAAATTATGATCCATGTTTC  493



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17398948584


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5